Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C190
  Reference Plasmid   CP103200.1
  Reference Plasmid Size   33962
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0147023 GDAMHNKD_00005 3302 11 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -89G>A None
M0147024 GDAMHNKD_00005 3380 11 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -11T>G None
M0147025 GDAMHNKD_00007 3923 12 Gut 0.55 protein_coding synonymous_variant LOW 57T>C Cys19Cys
M0147026 GDAMHNKD_00008 4244 12 Gut 0.55 protein_coding upstream_gene_variant MODIFIER -83A>G None
M0147027 GDAMHNKD_00008 4710 10 Gut 0.45 protein_coding synonymous_variant LOW 384T>C Val128Val
M0147028 GDAMHNKD_00010 5314 10 Gut 0.45 protein_coding missense_variant MODERATE 446A>G Asn149Ser
M0147029 GDAMHNKD_00010 5568 10 Gut 0.45 protein_coding synonymous_variant LOW 192G>A Val64Val
M0147030 GDAMHNKD_00010 5618 10 Gut 0.45 protein_coding missense_variant MODERATE 142A>G Ile48Val
M0147031 GDAMHNKD_00011 5782 9 Gut 0.41 protein_coding synonymous_variant LOW 678T>C Ile226Ile
M0147032 GDAMHNKD_00004 1998 4 Gut 0.18 protein_coding synonymous_variant LOW 453A>G Gly151Gly
M0147033 GDAMHNKD_00004 2211 3 Gut 0.14 protein_coding synonymous_variant LOW 666G>A Lys222Lys
M0147034 GDAMHNKD_00004 2454 4 Gut 0.18 protein_coding synonymous_variant LOW 909T>C Ala303Ala
M0147035 GDAMHNKD_00004 2574 3 Gut 0.14 protein_coding synonymous_variant LOW 1029A>G Lys343Lys
M0147036 GDAMHNKD_00004 2631 4 Gut 0.18 protein_coding synonymous_variant LOW 1086T>A Pro362Pro
M0147037 GDAMHNKD_00004 2658 4 Gut 0.18 protein_coding synonymous_variant LOW 1113C>T Ala371Ala
M0147038 GDAMHNKD_00005 2857 9 Gut 0.41 protein_coding upstream_gene_variant MODIFIER -534T>C None
M0147039 GDAMHNKD_00005 3024 8 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -367T>C None
M0147040 GDAMHNKD_00005 3141 10 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -250C>T None
M0147041 GDAMHNKD_00005 3224 10 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -167C>A None
M0147042 GDAMHNKD_00005 3258 10 Gut 0.45 protein_coding upstream_gene_variant MODIFIER -133G>A None
M0147043 GDAMHNKD_00038 27540 7 Gut 0.32 protein_coding synonymous_variant LOW 363T>C Cys121Cys
M0147044 GDAMHNKD_00038 27828 6 Gut 0.27 protein_coding synonymous_variant LOW 651C>A Val217Val
M0147045 GDAMHNKD_00038 27894 6 Gut 0.27 protein_coding synonymous_variant LOW 717A>G Gly239Gly
M0147046 GDAMHNKD_00038 27987 7 Gut 0.32 protein_coding synonymous_variant LOW 810T>C Ile270Ile
M0147047 GDAMHNKD_00038 28104 6 Gut 0.27 protein_coding synonymous_variant LOW 927G>A Glu309Glu
M0147048 GDAMHNKD_00038 28106 6 Gut 0.27 protein_coding missense_variant MODERATE 929A>T Tyr310Phe
M0147049 GDAMHNKD_00038 28287 7 Gut 0.32 protein_coding synonymous_variant LOW 1110T>C Ile370Ile
M0147050 GDAMHNKD_00038 28377 7 Gut 0.32 protein_coding synonymous_variant LOW 1200C>T Val400Val
M0147051 GDAMHNKD_00038 28812 7 Gut 0.32 protein_coding synonymous_variant LOW 1635G>A Gln545Gln
M0147052 GDAMHNKD_00038 28827 7 Gut 0.32 protein_coding synonymous_variant LOW 1650T>C Thr550Thr
M0147053 GDAMHNKD_00038 28870 7 Gut 0.32 protein_coding synonymous_variant LOW 1693C>T Leu565Leu
M0147054 GDAMHNKD_00040 29336 6 Gut 0.27 protein_coding synonymous_variant LOW 105A>G Thr35Thr
M0147055 GDAMHNKD_00040 29510 6 Gut 0.27 protein_coding synonymous_variant LOW 279C>T Val93Val
M0147056 GDAMHNKD_00040 29750 6 Gut 0.27 protein_coding synonymous_variant LOW 519A>G Pro173Pro
M0147057 GDAMHNKD_00040 29753 6 Gut 0.27 protein_coding synonymous_variant LOW 522G>A Glu174Glu
M0147058 GDAMHNKD_00040 29840 6 Gut 0.27 protein_coding synonymous_variant LOW 609C>T Asp203Asp
M0147059 GDAMHNKD_00040 30051 6 Gut 0.27 protein_coding missense_variant MODERATE 820G>A Val274Ile
M0147060 GDAMHNKD_00040 30054 6 Gut 0.27 protein_coding synonymous_variant LOW 823C>A Arg275Arg
M0147061 GDAMHNKD_00040 30132 6 Gut 0.27 protein_coding missense_variant MODERATE 901G>A Val301Ile
M0147062 GDAMHNKD_00040 30133 6 Gut 0.27 protein_coding missense_variant MODERATE 902T>C Val301Ala
M0147063 GDAMHNKD_00040 30329 6 Gut 0.27 protein_coding synonymous_variant LOW 1098G>A Ala366Ala
M0147064 GDAMHNKD_00041 30634 6 Gut 0.27 protein_coding missense_variant MODERATE 89A>G Lys30Arg
M0147065 GDAMHNKD_00041 30734 6 Gut 0.27 protein_coding synonymous_variant LOW 189T>C Tyr63Tyr
M0147066 GDAMHNKD_00042 30904 6 Gut 0.27 protein_coding synonymous_variant LOW 63T>C Gly21Gly
M0147067 GDAMHNKD_00042 31018 6 Gut 0.27 protein_coding synonymous_variant LOW 177A>G Val59Val
M0147068 GDAMHNKD_00042 31025 6 Gut 0.27 protein_coding synonymous_variant LOW 184T>C Leu62Leu
M0147069 GDAMHNKD_00042 31106 6 Gut 0.27 protein_coding missense_variant MODERATE 265A>G Ile89Val
M0147070 GDAMHNKD_00042 31265 6 Gut 0.27 protein_coding missense_variant MODERATE 424G>A Val142Ile
M0147071 GDAMHNKD_00042 31339 6 Gut 0.27 protein_coding synonymous_variant LOW 498G>A Gln166Gln
M0147072 GDAMHNKD_00042 31357 6 Gut 0.27 protein_coding synonymous_variant LOW 516C>T Asp172Asp
M0147073 GDAMHNKD_00042 31399 6 Gut 0.27 protein_coding synonymous_variant LOW 558C>T Gly186Gly
M0147074 GDAMHNKD_00042 31464 7 Gut 0.32 protein_coding missense_variant MODERATE 623G>C Ser208Thr
M0147075 GDAMHNKD_00042 31528 6 Gut 0.27 protein_coding synonymous_variant LOW 687A>G Lys229Lys
M0147076 GDAMHNKD_00042 31546 6 Gut 0.27 protein_coding synonymous_variant LOW 705C>A Ala235Ala
M0147077 GDAMHNKD_00042 31765 6 Gut 0.27 protein_coding synonymous_variant LOW 924A>G Arg308Arg
M0147078 GDAMHNKD_00042 31906 6 Gut 0.27 protein_coding synonymous_variant LOW 1065G>A Gln355Gln
M0147079 GDAMHNKD_00042 31972 6 Gut 0.27 protein_coding synonymous_variant LOW 1131C>A Ile377Ile
M0147080 GDAMHNKD_00042 32042 6 Gut 0.27 protein_coding synonymous_variant LOW 1201C>T Leu401Leu
M0147081 GDAMHNKD_00042 32045 6 Gut 0.27 protein_coding synonymous_variant LOW 1204T>C Leu402Leu
M0147082 GDAMHNKD_00042 32089 6 Gut 0.27 protein_coding synonymous_variant LOW 1248T>C Pro416Pro
M0147083 GDAMHNKD_00042 32191 6 Gut 0.27 protein_coding synonymous_variant LOW 1350A>G Gln450Gln
M0147084 GDAMHNKD_00042 32404 6 Gut 0.27 protein_coding synonymous_variant LOW 1563A>G Glu521Glu
M0147085 GDAMHNKD_00042 32458 6 Gut 0.27 protein_coding synonymous_variant LOW 1617G>A Lys539Lys
M0147086 GDAMHNKD_00042 32491 6 Gut 0.27 protein_coding synonymous_variant LOW 1650A>G Gly550Gly
M0147087 GDAMHNKD_00025 17571 5 Gut 0.23 protein_coding synonymous_variant LOW 30T>C Tyr10Tyr
M0147088 GDAMHNKD_00025 17619 5 Gut 0.23 protein_coding synonymous_variant LOW 78A>G Gly26Gly
M0147089 GDAMHNKD_00025 17634 5 Gut 0.23 protein_coding synonymous_variant LOW 93T>A Gly31Gly
M0147090 GDAMHNKD_00025 17736 5 Gut 0.23 protein_coding synonymous_variant LOW 195T>C Ser65Ser
M0147091 GDAMHNKD_00025 17742 5 Gut 0.23 protein_coding synonymous_variant LOW 201A>G Glu67Glu
M0147092 GDAMHNKD_00025 17752 5 Gut 0.23 protein_coding missense_variant MODERATE 211G>A Ala71Thr
M0147093 GDAMHNKD_00025 17790 5 Gut 0.23 protein_coding synonymous_variant LOW 249A>G Ala83Ala
M0147094 GDAMHNKD_00025 17805 5 Gut 0.23 protein_coding synonymous_variant LOW 264T>C Ile88Ile
M0147095 GDAMHNKD_00025 17900 6 Gut 0.27 protein_coding missense_variant MODERATE 359G>A Arg120Lys
M0147096 GDAMHNKD_00025 17908 7 Gut 0.32 protein_coding missense_variant MODERATE 367A>G Asn123Asp
M0147097 GDAMHNKD_00025 17925 5 Gut 0.23 protein_coding synonymous_variant LOW 384A>G Leu128Leu
M0147098 GDAMHNKD_00026 18116 6 Gut 0.27 protein_coding synonymous_variant LOW 39C>T Asp13Asp
M0147099 GDAMHNKD_00026 18203 5 Gut 0.23 protein_coding synonymous_variant LOW 126T>C His42His
M0147100 GDAMHNKD_00026 18208 5 Gut 0.23 protein_coding missense_variant MODERATE 131A>G Lys44Arg
M0147101 GDAMHNKD_00026 18221 5 Gut 0.23 protein_coding synonymous_variant LOW 144T>C Ala48Ala
M0147102 GDAMHNKD_00027 18387 5 Gut 0.23 protein_coding missense_variant MODERATE 125G>A Gly42Glu
M0147103 GDAMHNKD_00027 18403 5 Gut 0.23 protein_coding synonymous_variant LOW 141G>T Thr47Thr
M0147104 GDAMHNKD_00027 18580 5 Gut 0.23 protein_coding synonymous_variant LOW 318A>G Pro106Pro
M0147105 GDAMHNKD_00027 18582 5 Gut 0.23 protein_coding missense_variant MODERATE 320T>C Phe107Ser
M0147106 GDAMHNKD_00027 18588 5 Gut 0.23 protein_coding missense_variant MODERATE 326A>T His109Leu
M0147107 GDAMHNKD_00028 18830 5 Gut 0.23 protein_coding synonymous_variant LOW 120C>T Ser40Ser
M0147108 GDAMHNKD_00028 18831 5 Gut 0.23 protein_coding missense_variant MODERATE 121G>T Ala41Ser
M0147109 GDAMHNKD_00028 18854 5 Gut 0.23 protein_coding synonymous_variant LOW 144C>T Ser48Ser
M0147110 GDAMHNKD_00028 18980 5 Gut 0.23 protein_coding synonymous_variant LOW 270C>T His90His
M0147111 GDAMHNKD_00028 18989 6 Gut 0.27 protein_coding synonymous_variant LOW 279G>A Glu93Glu
M0147112 GDAMHNKD_00028 18992 6 Gut 0.27 protein_coding synonymous_variant LOW 282T>C Tyr94Tyr
M0147113 GDAMHNKD_00028 18995 6 Gut 0.27 protein_coding synonymous_variant LOW 285G>T Leu95Leu
M0147114 GDAMHNKD_00028 19001 6 Gut 0.27 protein_coding synonymous_variant LOW 291C>A Gly97Gly
M0147115 GDAMHNKD_00029 19172 5 Gut 0.23 protein_coding synonymous_variant LOW 120G>A Val40Val
M0147116 GDAMHNKD_00029 19280 6 Gut 0.27 protein_coding synonymous_variant LOW 228T>C Thr76Thr
M0147117 GDAMHNKD_00021 19381 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4646T>C None
M0147118 GDAMHNKD_00030 19833 6 Gut 0.27 protein_coding synonymous_variant LOW 375A>G Lys125Lys
M0147119 GDAMHNKD_00030 19861 6 Gut 0.27 protein_coding missense_variant MODERATE 403T>A Cys135Ser
M0147120 GDAMHNKD_00002 503 7 Gut 0.32 protein_coding upstream_gene_variant MODIFIER -462A>G None
M0147121 GDAMHNKD_00005 2822 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -569G>A None
M0147122 GDAMHNKD_00005 2825 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -566T>C None
M0147123 GDAMHNKD_00005 2826 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -565G>A None
M0147124 GDAMHNKD_00005 2933 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -458G>C None
M0147125 GDAMHNKD_00005 3001 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -390A>C None
M0147126 GDAMHNKD_00005 3077 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -314A>C None
M0147127 GDAMHNKD_00005 3208 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -183A>G None
M0147128 GDAMHNKD_00009 5235 9 Gut 0.41 protein_coding upstream_gene_variant MODIFIER -58A>C None
M0147129 GDAMHNKD_00009 5251 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -74T>A None
M0147130 GDAMHNKD_00009 5252 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -75T>C None
M0147131 GDAMHNKD_00009 5253 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -76T>A None
M0147132 GDAMHNKD_00009 5254 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -77T>A None
M0147133 GDAMHNKD_00009 5255 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -78G>A None
M0147134 GDAMHNKD_00009 5256 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -79T>A None
M0147135 GDAMHNKD_00011 5968 8 Gut 0.36 protein_coding synonymous_variant LOW 492C>T Asn164Asn
M0147136 GDAMHNKD_00011 5971 8 Gut 0.36 protein_coding synonymous_variant LOW 489T>C Pro163Pro
M0147137 GDAMHNKD_00011 6115 8 Gut 0.36 protein_coding synonymous_variant LOW 345A>G Leu115Leu
M0147138 GDAMHNKD_00009 6624 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -1447G>A None
M0147139 GDAMHNKD_00009 6908 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1731T>G None
M0147140 GDAMHNKD_00012 7171 6 Gut 0.27 protein_coding synonymous_variant LOW 210T>C His70His
M0147141 GDAMHNKD_00012 7183 6 Gut 0.27 protein_coding synonymous_variant LOW 222A>G Leu74Leu
M0147142 GDAMHNKD_00012 7198 6 Gut 0.27 protein_coding synonymous_variant LOW 237T>C Asn79Asn
M0147143 GDAMHNKD_00012 7205 6 Gut 0.27 protein_coding missense_variant MODERATE 244C>A Leu82Ile
M0147144 GDAMHNKD_00012 7225 6 Gut 0.27 protein_coding synonymous_variant LOW 264G>A Glu88Glu
M0147145 GDAMHNKD_00013 7513 6 Gut 0.27 protein_coding missense_variant MODERATE 247G>A Val83Ile
M0147146 GDAMHNKD_00013 7530 6 Gut 0.27 protein_coding synonymous_variant LOW 264G>A Leu88Leu
M0147147 GDAMHNKD_00013 7542 6 Gut 0.27 protein_coding synonymous_variant LOW 276A>G Gly92Gly
M0147148 GDAMHNKD_00013 7584 6 Gut 0.27 protein_coding synonymous_variant LOW 318G>A Lys106Lys
M0147149 GDAMHNKD_00013 7593 6 Gut 0.27 protein_coding synonymous_variant LOW 327A>G Arg109Arg
M0147150 GDAMHNKD_00013 7668 6 Gut 0.27 protein_coding synonymous_variant LOW 402T>C Ser134Ser
M0147151 GDAMHNKD_00013 7998 6 Gut 0.27 protein_coding synonymous_variant LOW 732A>G Leu244Leu
M0147152 GDAMHNKD_00013 8033 6 Gut 0.27 protein_coding missense_variant MODERATE 767G>A Gly256Asp
M0147153 GDAMHNKD_00013 8038 7 Gut 0.32 protein_coding missense_variant MODERATE 772A>G Met258Val
M0147154 GDAMHNKD_00013 8136 6 Gut 0.27 protein_coding synonymous_variant LOW 870G>A Arg290Arg
M0147155 GDAMHNKD_00013 8208 6 Gut 0.27 protein_coding synonymous_variant LOW 942A>G Gln314Gln
M0147156 GDAMHNKD_00013 8235 6 Gut 0.27 protein_coding synonymous_variant LOW 969T>C Tyr323Tyr
M0147157 GDAMHNKD_00013 8277 6 Gut 0.27 protein_coding synonymous_variant LOW 1011C>T Ser337Ser
M0147158 GDAMHNKD_00013 8319 6 Gut 0.27 protein_coding synonymous_variant LOW 1053T>C Asn351Asn
M0147159 GDAMHNKD_00013 8320 6 Gut 0.27 protein_coding synonymous_variant LOW 1054C>T Leu352Leu
M0147160 GDAMHNKD_00013 8484 6 Gut 0.27 protein_coding synonymous_variant LOW 1218A>G Glu406Glu
M0147161 GDAMHNKD_00013 8499 6 Gut 0.27 protein_coding synonymous_variant LOW 1233A>G Thr411Thr
M0147162 GDAMHNKD_00013 8517 6 Gut 0.27 protein_coding synonymous_variant LOW 1251C>T Ile417Ile
M0147163 GDAMHNKD_00013 8544 6 Gut 0.27 protein_coding synonymous_variant LOW 1278A>G Glu426Glu
M0147164 GDAMHNKD_00013 8643 6 Gut 0.27 protein_coding synonymous_variant LOW 1377C>T Asp459Asp
M0147165 GDAMHNKD_00009 8704 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3527T>C None
M0147166 GDAMHNKD_00001 25 6 Gut 0.27 protein_coding synonymous_variant LOW 25T>C Leu9Leu
M0147167 GDAMHNKD_00001 141 6 Gut 0.27 protein_coding synonymous_variant LOW 141A>G Leu47Leu
M0147168 GDAMHNKD_00001 166 6 Gut 0.27 protein_coding missense_variant MODERATE 166A>C Ile56Leu
M0147169 GDAMHNKD_00001 261 6 Gut 0.27 protein_coding synonymous_variant LOW 261A>G Arg87Arg
M0147170 GDAMHNKD_00001 405 7 Gut 0.32 protein_coding synonymous_variant LOW 405A>G Arg135Arg
M0147171 GDAMHNKD_00002 810 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -155A>G None
M0147172 GDAMHNKD_00002 813 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -152A>G None
M0147173 GDAMHNKD_00002 820 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -145A>T None
M0147174 GDAMHNKD_00002 832 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -133G>A None
M0147175 GDAMHNKD_00002 835 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -130C>T None
M0147176 GDAMHNKD_00002 839 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -126G>A None
M0147177 GDAMHNKD_00002 850 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -115A>T None
M0147178 GDAMHNKD_00002 1180 3 Gut 0.14 protein_coding synonymous_variant LOW 216T>C His72His
M0147179 GDAMHNKD_00003 1332 3 Gut 0.14 protein_coding synonymous_variant LOW 99T>C Asn33Asn
M0147180 GDAMHNKD_00003 1371 3 Gut 0.14 protein_coding synonymous_variant LOW 138C>T Leu46Leu
M0147181 GDAMHNKD_00003 1377 3 Gut 0.14 protein_coding synonymous_variant LOW 144C>T Ala48Ala
M0147182 GDAMHNKD_00003 1509 3 Gut 0.14 protein_coding synonymous_variant LOW 276G>A Gln92Gln
M0147183 GDAMHNKD_00004 1584 3 Gut 0.14 protein_coding synonymous_variant LOW 39T>C Ser13Ser
M0147184 GDAMHNKD_00004 1606 3 Gut 0.14 protein_coding missense_variant MODERATE 61A>G Ile21Val
M0147185 GDAMHNKD_00004 1800 3 Gut 0.14 protein_coding synonymous_variant LOW 255C>T Arg85Arg
M0147186 GDAMHNKD_00004 1848 3 Gut 0.14 protein_coding synonymous_variant LOW 303C>T His101His
M0147187 GDAMHNKD_00004 1922 3 Gut 0.14 protein_coding missense_variant MODERATE 377G>A Ser126Asn
M0147188 GDAMHNKD_00005 2982 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -409A>T None
M0147189 GDAMHNKD_00011 6322 6 Gut 0.27 protein_coding synonymous_variant LOW 138C>T Val46Val
M0147190 GDAMHNKD_00009 6462 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1285G>A None
M0147191 GDAMHNKD_00009 6481 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1304A>G None
M0147192 GDAMHNKD_00009 6492 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1315C>T None
M0147193 GDAMHNKD_00009 6532 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -1355G>A None
M0147194 GDAMHNKD_00009 6764 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -1587C>T None
M0147195 GDAMHNKD_00009 6775 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -1598C>T None
M0147196 GDAMHNKD_00013 8426 4 Gut 0.18 protein_coding missense_variant MODERATE 1160C>A Thr387Asn
M0147197 GDAMHNKD_00013 8448 5 Gut 0.23 protein_coding synonymous_variant LOW 1182C>T Phe394Phe
M0147198 GDAMHNKD_00013 8498 4 Gut 0.18 protein_coding missense_variant MODERATE 1232C>T Thr411Ile
M0147199 GDAMHNKD_00020 13258 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -478A>G None
M0147200 GDAMHNKD_00020 13307 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -527G>A None
M0147201 GDAMHNKD_00020 13340 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -560A>G None
M0147202 GDAMHNKD_00020 13374 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -594A>G None
M0147203 GDAMHNKD_00020 13377 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -597G>A None
M0147204 GDAMHNKD_00021 13499 4 Gut 0.18 protein_coding missense_variant MODERATE 1237G>A Asp413Asn
M0147205 GDAMHNKD_00021 13536 3 Gut 0.14 protein_coding synonymous_variant LOW 1200T>C Asp400Asp
M0147206 GDAMHNKD_00021 13572 6 Gut 0.27 protein_coding missense_variant MODERATE 1164A>G Ile388Met
M0147207 GDAMHNKD_00021 14166 6 Gut 0.27 protein_coding synonymous_variant LOW 570C>T Pro190Pro
M0147208 GDAMHNKD_00021 14301 5 Gut 0.23 protein_coding synonymous_variant LOW 435A>G Thr145Thr
M0147209 GDAMHNKD_00021 14562 5 Gut 0.23 protein_coding synonymous_variant LOW 174T>G Val58Val
M0147210 GDAMHNKD_00021 14610 3 Gut 0.14 protein_coding synonymous_variant LOW 126C>T Thr42Thr
M0147211 GDAMHNKD_00022 14816 6 Gut 0.27 protein_coding missense_variant MODERATE 1142A>G Glu381Gly
M0147212 GDAMHNKD_00022 14887 4 Gut 0.18 protein_coding synonymous_variant LOW 1071G>A Leu357Leu
M0147213 GDAMHNKD_00022 14956 7 Gut 0.32 protein_coding synonymous_variant LOW 1002C>T Asn334Asn
M0147214 GDAMHNKD_00022 15061 7 Gut 0.32 protein_coding synonymous_variant LOW 897A>G Leu299Leu
M0147215 GDAMHNKD_00022 15085 6 Gut 0.27 protein_coding synonymous_variant LOW 873A>T Ala291Ala
M0147216 GDAMHNKD_00022 15121 5 Gut 0.23 protein_coding synonymous_variant LOW 837G>A Glu279Glu
M0147217 GDAMHNKD_00022 15150 6 Gut 0.27 protein_coding missense_variant MODERATE 808A>G Asn270Asp
M0147218 GDAMHNKD_00022 15331 5 Gut 0.23 protein_coding synonymous_variant LOW 627A>G Leu209Leu
M0147219 GDAMHNKD_00022 15643 6 Gut 0.27 protein_coding synonymous_variant LOW 315T>C Thr105Thr
M0147220 GDAMHNKD_00022 15703 5 Gut 0.23 protein_coding synonymous_variant LOW 255A>G Glu85Glu
M0147221 GDAMHNKD_00022 15802 5 Gut 0.23 protein_coding synonymous_variant LOW 156G>A Gly52Gly
M0147222 GDAMHNKD_00023 16067 5 Gut 0.23 protein_coding synonymous_variant LOW 630A>T Gly210Gly
M0147223 GDAMHNKD_00023 16178 5 Gut 0.23 protein_coding synonymous_variant LOW 519A>G Lys173Lys
M0147224 GDAMHNKD_00023 16181 5 Gut 0.23 protein_coding synonymous_variant LOW 516A>G Leu172Leu
M0147225 GDAMHNKD_00023 16229 5 Gut 0.23 protein_coding synonymous_variant LOW 468A>C Ile156Ile
M0147226 GDAMHNKD_00023 16331 6 Gut 0.27 protein_coding synonymous_variant LOW 366T>C Thr122Thr
M0147227 GDAMHNKD_00023 16605 4 Gut 0.18 protein_coding missense_variant MODERATE 92A>G Asn31Ser
M0147228 GDAMHNKD_00020 16700 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -3920G>T None
M0147229 GDAMHNKD_00020 16787 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4007C>T None
M0147230 GDAMHNKD_00024 16842 3 Gut 0.14 protein_coding missense_variant MODERATE 591A>C Arg197Ser
M0147231 GDAMHNKD_00024 16878 4 Gut 0.18 protein_coding synonymous_variant LOW 555G>A Lys185Lys
M0147232 GDAMHNKD_00024 16901 4 Gut 0.18 protein_coding missense_variant MODERATE 532G>A Val178Ile
M0147233 GDAMHNKD_00024 16986 4 Gut 0.18 protein_coding synonymous_variant LOW 447G>A Arg149Arg
M0147234 GDAMHNKD_00024 17097 4 Gut 0.18 protein_coding synonymous_variant LOW 336A>G Ala112Ala
M0147235 GDAMHNKD_00024 17136 4 Gut 0.18 protein_coding synonymous_variant LOW 297A>T Pro99Pro
M0147236 GDAMHNKD_00024 17223 4 Gut 0.18 protein_coding synonymous_variant LOW 210C>T Thr70Thr
M0147237 GDAMHNKD_00024 17253 5 Gut 0.23 protein_coding synonymous_variant LOW 180A>G Val60Val
M0147238 GDAMHNKD_00020 17494 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4714T>A None
M0147239 GDAMHNKD_00030 20052 6 Gut 0.27 protein_coding synonymous_variant LOW 594T>C Thr198Thr
M0147240 GDAMHNKD_00030 20202 5 Gut 0.23 protein_coding synonymous_variant LOW 744A>G Gly248Gly
M0147241 GDAMHNKD_00030 20358 5 Gut 0.23 protein_coding synonymous_variant LOW 900A>T Leu300Leu
M0147242 GDAMHNKD_00030 20397 6 Gut 0.27 protein_coding synonymous_variant LOW 939A>G Glu313Glu
M0147243 GDAMHNKD_00030 20679 5 Gut 0.23 protein_coding synonymous_variant LOW 1221T>C Asn407Asn
M0147244 GDAMHNKD_00030 20727 5 Gut 0.23 protein_coding synonymous_variant LOW 1269A>G Gly423Gly
M0147245 GDAMHNKD_00030 21004 5 Gut 0.23 protein_coding synonymous_variant LOW 1546C>T Leu516Leu
M0147246 GDAMHNKD_00030 21084 5 Gut 0.23 protein_coding synonymous_variant LOW 1626T>C Asn542Asn
M0147247 GDAMHNKD_00030 21189 5 Gut 0.23 protein_coding synonymous_variant LOW 1731C>A Ile577Ile
M0147248 GDAMHNKD_00030 21195 5 Gut 0.23 protein_coding synonymous_variant LOW 1737C>T Pro579Pro
M0147249 GDAMHNKD_00030 21331 5 Gut 0.23 protein_coding missense_variant MODERATE 1873T>A Tyr625Asn
M0147250 GDAMHNKD_00030 21332 5 Gut 0.23 protein_coding missense_variant MODERATE 1874A>G Tyr625Cys
M0147251 GDAMHNKD_00030 21489 6 Gut 0.27 protein_coding synonymous_variant LOW 2031A>T Ala677Ala
M0147252 GDAMHNKD_00030 21624 6 Gut 0.27 protein_coding synonymous_variant LOW 2166T>C Phe722Phe
M0147253 GDAMHNKD_00030 21681 5 Gut 0.23 protein_coding synonymous_variant LOW 2223G>A Thr741Thr
M0147254 GDAMHNKD_00030 21994 8 Gut 0.36 protein_coding missense_variant MODERATE 2536G>A Glu846Lys
M0147255 GDAMHNKD_00031 22237 5 Gut 0.23 protein_coding synonymous_variant LOW 171C>A Val57Val
M0147256 GDAMHNKD_00032 22611 5 Gut 0.23 protein_coding missense_variant MODERATE 311G>A Ser104Asn
M0147257 GDAMHNKD_00032 22844 9 Gut 0.41 protein_coding missense_variant MODERATE 544A>G Ile182Val
M0147258 GDAMHNKD_00032 22846 9 Gut 0.41 protein_coding synonymous_variant LOW 546T>A Ile182Ile
M0147259 GDAMHNKD_00032 22847 9 Gut 0.41 protein_coding missense_variant MODERATE 547A>G Lys183Glu
M0147260 GDAMHNKD_00032 22848 9 Gut 0.41 protein_coding missense_variant MODERATE 548A>G Lys183Arg
M0147261 GDAMHNKD_00033 23064 5 Gut 0.23 protein_coding synonymous_variant LOW 156G>A Gln52Gln
M0147262 GDAMHNKD_00033 23074 5 Gut 0.23 protein_coding missense_variant MODERATE 166T>G Ser56Ala
M0147263 GDAMHNKD_00034 24240 5 Gut 0.23 protein_coding synonymous_variant LOW 273C>T Ser91Ser
M0147264 GDAMHNKD_00034 24250 5 Gut 0.23 protein_coding missense_variant MODERATE 283A>G Asn95Asp
M0147265 GDAMHNKD_00034 24286 5 Gut 0.23 protein_coding synonymous_variant LOW 319C>A Arg107Arg
M0147266 GDAMHNKD_00034 24363 5 Gut 0.23 protein_coding synonymous_variant LOW 396C>A Gly132Gly
M0147267 GDAMHNKD_00034 24474 5 Gut 0.23 protein_coding synonymous_variant LOW 507T>A Ser169Ser
M0147268 GDAMHNKD_00034 24546 5 Gut 0.23 protein_coding missense_variant MODERATE 579C>A Asp193Glu
M0147269 GDAMHNKD_00035 24621 6 Gut 0.27 protein_coding missense_variant MODERATE 17G>A Arg6Lys
M0147270 GDAMHNKD_00035 24727 5 Gut 0.23 protein_coding synonymous_variant LOW 123A>T Ser41Ser
M0147271 GDAMHNKD_00035 24946 5 Gut 0.23 protein_coding synonymous_variant LOW 342A>G Glu114Glu
M0147272 GDAMHNKD_00035 25011 5 Gut 0.23 protein_coding missense_variant MODERATE 407A>G Asn136Ser
M0147273 GDAMHNKD_00035 25027 5 Gut 0.23 protein_coding missense_variant MODERATE 423T>A Asp141Glu
M0147274 GDAMHNKD_00035 25167 5 Gut 0.23 protein_coding missense_variant MODERATE 563A>G Gln188Arg
M0147275 GDAMHNKD_00035 25339 5 Gut 0.23 protein_coding synonymous_variant LOW 735A>G Lys245Lys
M0147276 GDAMHNKD_00035 25510 5 Gut 0.23 protein_coding synonymous_variant LOW 906G>A Gly302Gly
M0147277 GDAMHNKD_00035 25795 5 Gut 0.23 protein_coding synonymous_variant LOW 1191A>G Glu397Glu
M0147278 GDAMHNKD_00035 25885 5 Gut 0.23 protein_coding synonymous_variant LOW 1281T>C Asn427Asn
M0147279 GDAMHNKD_00035 25903 5 Gut 0.23 protein_coding synonymous_variant LOW 1299T>C Ile433Ile
M0147280 GDAMHNKD_00037 26669 5 Gut 0.23 protein_coding missense_variant MODERATE 547C>A His183Asn
M0147281 GDAMHNKD_00037 26719 5 Gut 0.23 protein_coding synonymous_variant LOW 597A>G Ala199Ala
M0147282 GDAMHNKD_00037 26731 5 Gut 0.23 protein_coding synonymous_variant LOW 609A>G Val203Val
M0147283 GDAMHNKD_00037 27103 5 Gut 0.23 protein_coding synonymous_variant LOW 981A>G Arg327Arg
M0147284 GDAMHNKD_00038 27183 5 Gut 0.23 protein_coding synonymous_variant LOW 6G>A Lys2Lys
M0147285 GDAMHNKD_00038 27225 5 Gut 0.23 protein_coding synonymous_variant LOW 48G>T Gly16Gly
M0147286 GDAMHNKD_00038 27686 5 Gut 0.23 protein_coding missense_variant MODERATE 509C>T Thr170Ile
M0147287 GDAMHNKD_00038 27923 5 Gut 0.23 protein_coding missense_variant MODERATE 746A>T Tyr249Phe
M0147288 GDAMHNKD_00038 27927 5 Gut 0.23 protein_coding synonymous_variant LOW 750T>C Leu250Leu
M0147289 GDAMHNKD_00040 30491 5 Gut 0.23 protein_coding synonymous_variant LOW 1260T>C Phe420Phe
M0147290 GDAMHNKD_00043 32807 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -28T>C None
M0147291 GDAMHNKD_00043 32818 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -17T>C None
M0147292 GDAMHNKD_00043 32827 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -8A>T None
M0147293 GDAMHNKD_00043 32828 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -7A>T None
M0147294 GDAMHNKD_00043 32864 5 Gut 0.23 protein_coding synonymous_variant LOW 30A>G Leu10Leu
M0147295 GDAMHNKD_00043 32889 5 Gut 0.23 protein_coding missense_variant MODERATE 55A>C Thr19Pro
M0147296 GDAMHNKD_00043 33047 5 Gut 0.23 protein_coding synonymous_variant LOW 213G>A Gln71Gln
M0147297 GDAMHNKD_00043 33105 5 Gut 0.23 protein_coding missense_variant MODERATE 271A>G Thr91Ala
M0147298 GDAMHNKD_00043 33143 9 Gut 0.41 protein_coding synonymous_variant LOW 309A>G Lys103Lys
M0147299 GDAMHNKD_00044 33318 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -201A>G None
M0147300 GDAMHNKD_00044 33336 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -183T>C None
M0147301 GDAMHNKD_00044 33384 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -135A>G None
M0147302 GDAMHNKD_00044 33403 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -116T>C None
M0147303 GDAMHNKD_00044 33406 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -113A>G None
M0147304 GDAMHNKD_00044 33472 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -47T>C None
M0147305 GDAMHNKD_00044 33479 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -40A>G None
M0147306 GDAMHNKD_00044 33836 6 Gut 0.27 protein_coding synonymous_variant LOW 318G>A Lys106Lys
M0147307 GDAMHNKD_00009 6572 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -1395T>G None
M0147308 GDAMHNKD_00009 6689 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -1512C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term