Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C192
  Reference Plasmid   CP103219.1
  Reference Plasmid Size   35266
  Reference Plasmid GC Content   0.36
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0147312 ENGMLIPH_00002 719 9 Gut 0.47 protein_coding synonymous_variant LOW 43T>C Leu15Leu
M0147313 ENGMLIPH_00003 1314 9 Gut 0.47 protein_coding synonymous_variant LOW 33T>C Pro11Pro
M0147314 ENGMLIPH_00004 1369 9 Gut 0.47 protein_coding synonymous_variant LOW 678T>C Ile226Ile
M0147315 ENGMLIPH_00004 1555 9 Gut 0.47 protein_coding synonymous_variant LOW 492C>T Asn164Asn
M0147316 ENGMLIPH_00004 1558 9 Gut 0.47 protein_coding synonymous_variant LOW 489T>C Pro163Pro
M0147317 ENGMLIPH_00004 1702 9 Gut 0.47 protein_coding synonymous_variant LOW 345A>G Leu115Leu
M0147318 ENGMLIPH_00004 1909 8 Gut 0.42 protein_coding synonymous_variant LOW 138C>T Val46Val
M0147319 ENGMLIPH_00002 2049 10 Gut 0.53 protein_coding upstream_gene_variant MODIFIER -1288G>A None
M0147320 ENGMLIPH_00002 2163 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1402A>G None
M0147321 ENGMLIPH_00002 2195 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1434A>G None
M0147322 ENGMLIPH_00002 2199 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1438C>T None
M0147323 ENGMLIPH_00002 2228 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1467T>C None
M0147324 ENGMLIPH_00002 2268 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1507T>C None
M0147325 ENGMLIPH_00002 2283 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1522A>G None
M0147326 ENGMLIPH_00002 2288 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1527T>A None
M0147327 ENGMLIPH_00002 2289 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1528T>A None
M0147328 ENGMLIPH_00002 2301 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1540A>G None
M0147329 ENGMLIPH_00002 2351 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -1590C>T None
M0147330 ENGMLIPH_00002 2472 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -1711A>G None
M0147331 ENGMLIPH_00002 2495 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -1734T>G None
M0147332 ENGMLIPH_00005 2594 10 Gut 0.53 protein_coding missense_variant MODERATE 46A>G Lys16Glu
M0147333 ENGMLIPH_00005 2758 9 Gut 0.47 protein_coding synonymous_variant LOW 210T>C His70His
M0147334 ENGMLIPH_00005 2785 9 Gut 0.47 protein_coding synonymous_variant LOW 237T>C Asn79Asn
M0147335 ENGMLIPH_00005 2792 9 Gut 0.47 protein_coding missense_variant MODERATE 244C>A Leu82Ile
M0147336 ENGMLIPH_00005 2812 9 Gut 0.47 protein_coding synonymous_variant LOW 264G>A Glu88Glu
M0147337 ENGMLIPH_00006 2872 10 Gut 0.53 protein_coding missense_variant MODERATE 19A>G Asn7Asp
M0147338 ENGMLIPH_00006 3100 8 Gut 0.42 protein_coding missense_variant MODERATE 247G>A Val83Ile
M0147339 ENGMLIPH_00006 3117 8 Gut 0.42 protein_coding synonymous_variant LOW 264G>A Leu88Leu
M0147340 ENGMLIPH_00006 3171 8 Gut 0.42 protein_coding synonymous_variant LOW 318G>A Lys106Lys
M0147341 ENGMLIPH_00006 3320 8 Gut 0.42 protein_coding missense_variant MODERATE 467T>C Phe156Ser
M0147342 ENGMLIPH_00006 3585 8 Gut 0.42 protein_coding synonymous_variant LOW 732A>G Leu244Leu
M0147343 ENGMLIPH_00006 3620 8 Gut 0.42 protein_coding missense_variant MODERATE 767G>A Gly256Asp
M0147344 ENGMLIPH_00006 3723 8 Gut 0.42 protein_coding synonymous_variant LOW 870G>A Arg290Arg
M0147345 ENGMLIPH_00006 3795 8 Gut 0.42 protein_coding synonymous_variant LOW 942A>G Gln314Gln
M0147346 ENGMLIPH_00006 3822 8 Gut 0.42 protein_coding synonymous_variant LOW 969T>C Tyr323Tyr
M0147347 ENGMLIPH_00006 3864 8 Gut 0.42 protein_coding synonymous_variant LOW 1011C>T Ser337Ser
M0147348 ENGMLIPH_00006 3907 8 Gut 0.42 protein_coding synonymous_variant LOW 1054C>T Leu352Leu
M0147349 ENGMLIPH_00006 3915 8 Gut 0.42 protein_coding synonymous_variant LOW 1062A>G Glu354Glu
M0147350 ENGMLIPH_00006 4013 7 Gut 0.37 protein_coding missense_variant MODERATE 1160C>A Thr387Asn
M0147351 ENGMLIPH_00006 4035 8 Gut 0.42 protein_coding synonymous_variant LOW 1182C>T Phe394Phe
M0147352 ENGMLIPH_00006 4085 4 Gut 0.21 protein_coding missense_variant MODERATE 1232C>T Thr411Met
M0147353 ENGMLIPH_00006 4104 8 Gut 0.42 protein_coding synonymous_variant LOW 1251C>T Ile417Ile
M0147354 ENGMLIPH_00006 4230 8 Gut 0.42 protein_coding synonymous_variant LOW 1377C>T Asp459Asp
M0147355 ENGMLIPH_00002 4291 8 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -3530T>C None
M0147356 ENGMLIPH_00009 4921 3 Gut 0.16 protein_coding synonymous_variant LOW 129G>A Glu43Glu
M0147357 ENGMLIPH_00009 5044 3 Gut 0.16 protein_coding synonymous_variant LOW 252G>A Glu84Glu
M0147358 ENGMLIPH_00009 5161 3 Gut 0.16 protein_coding synonymous_variant LOW 369C>T Ile123Ile
M0147359 ENGMLIPH_00009 5512 3 Gut 0.16 protein_coding synonymous_variant LOW 720G>A Lys240Lys
M0147360 ENGMLIPH_00009 5627 3 Gut 0.16 protein_coding missense_variant MODERATE 835C>G Leu279Val
M0147361 ENGMLIPH_00009 5695 3 Gut 0.16 protein_coding synonymous_variant LOW 903A>G Ala301Ala
M0147362 ENGMLIPH_00016 10878 6 Gut 0.32 protein_coding missense_variant MODERATE 1164A>G Ile388Met
M0147363 ENGMLIPH_00016 10892 6 Gut 0.32 protein_coding missense_variant MODERATE 1150T>C Ser384Pro
M0147364 ENGMLIPH_00016 11472 9 Gut 0.47 protein_coding synonymous_variant LOW 570C>T Pro190Pro
M0147365 ENGMLIPH_00016 11586 10 Gut 0.53 protein_coding synonymous_variant LOW 456T>C Ser152Ser
M0147366 ENGMLIPH_00016 11607 9 Gut 0.47 protein_coding synonymous_variant LOW 435A>G Thr145Thr
M0147367 ENGMLIPH_00016 11868 9 Gut 0.47 protein_coding synonymous_variant LOW 174T>G Val58Val
M0147368 ENGMLIPH_00016 11916 4 Gut 0.21 protein_coding synonymous_variant LOW 126C>T Thr42Thr
M0147369 ENGMLIPH_00017 12122 9 Gut 0.47 protein_coding missense_variant MODERATE 1142A>G Glu381Gly
M0147370 ENGMLIPH_00017 12139 9 Gut 0.47 protein_coding synonymous_variant LOW 1125A>G Leu375Leu
M0147371 ENGMLIPH_00017 12193 7 Gut 0.37 protein_coding synonymous_variant LOW 1071G>A Leu357Leu
M0147372 ENGMLIPH_00017 12427 9 Gut 0.47 protein_coding synonymous_variant LOW 837G>A Glu279Glu
M0147373 ENGMLIPH_00017 12637 9 Gut 0.47 protein_coding synonymous_variant LOW 627A>G Leu209Leu
M0147374 ENGMLIPH_00017 12832 9 Gut 0.47 protein_coding synonymous_variant LOW 432A>G Pro144Pro
M0147375 ENGMLIPH_00017 12949 9 Gut 0.47 protein_coding synonymous_variant LOW 315T>C Thr105Thr
M0147376 ENGMLIPH_00017 13009 9 Gut 0.47 protein_coding synonymous_variant LOW 255A>G Glu85Glu
M0147377 ENGMLIPH_00017 13108 9 Gut 0.47 protein_coding synonymous_variant LOW 156G>A Gly52Gly
M0147378 ENGMLIPH_00018 13373 9 Gut 0.47 protein_coding synonymous_variant LOW 630A>T Gly210Gly
M0147379 ENGMLIPH_00018 13484 9 Gut 0.47 protein_coding synonymous_variant LOW 519A>G Lys173Lys
M0147380 ENGMLIPH_00018 13523 10 Gut 0.53 protein_coding synonymous_variant LOW 480A>G Pro160Pro
M0147381 ENGMLIPH_00018 13535 9 Gut 0.47 protein_coding synonymous_variant LOW 468A>C Ile156Ile
M0147382 ENGMLIPH_00018 13637 9 Gut 0.47 protein_coding synonymous_variant LOW 366T>C Thr122Thr
M0147383 ENGMLIPH_00018 13658 9 Gut 0.47 protein_coding synonymous_variant LOW 345T>A Pro115Pro
M0147384 ENGMLIPH_00018 13911 9 Gut 0.47 protein_coding missense_variant MODERATE 92A>G Asn31Ser
M0147385 ENGMLIPH_00015 14006 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -3918G>T None
M0147386 ENGMLIPH_00015 14032 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -3944G>A None
M0147387 ENGMLIPH_00015 14093 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -4005C>T None
M0147388 ENGMLIPH_00019 14148 8 Gut 0.42 protein_coding missense_variant MODERATE 591A>C Arg197Ser
M0147389 ENGMLIPH_00019 14184 10 Gut 0.53 protein_coding synonymous_variant LOW 555G>A Lys185Lys
M0147390 ENGMLIPH_00019 14207 9 Gut 0.47 protein_coding missense_variant MODERATE 532G>A Val178Ile
M0147391 ENGMLIPH_00019 14292 10 Gut 0.53 protein_coding synonymous_variant LOW 447G>A Arg149Arg
M0147392 ENGMLIPH_00019 14403 10 Gut 0.53 protein_coding synonymous_variant LOW 336A>G Ala112Ala
M0147393 ENGMLIPH_00019 14442 10 Gut 0.53 protein_coding synonymous_variant LOW 297A>T Pro99Pro
M0147394 ENGMLIPH_00019 14529 10 Gut 0.53 protein_coding synonymous_variant LOW 210C>T Thr70Thr
M0147395 ENGMLIPH_00019 14559 10 Gut 0.53 protein_coding synonymous_variant LOW 180A>G Val60Val
M0147396 ENGMLIPH_00015 14800 10 Gut 0.53 protein_coding upstream_gene_variant MODIFIER -4712T>A None
M0147397 ENGMLIPH_00020 14894 10 Gut 0.53 protein_coding synonymous_variant LOW 60T>C Tyr20Tyr
M0147398 ENGMLIPH_00020 14957 10 Gut 0.53 protein_coding synonymous_variant LOW 123T>A Gly41Gly
M0147399 ENGMLIPH_00020 15059 10 Gut 0.53 protein_coding synonymous_variant LOW 225T>C Ser75Ser
M0147400 ENGMLIPH_00020 15065 10 Gut 0.53 protein_coding synonymous_variant LOW 231A>G Glu77Glu
M0147401 ENGMLIPH_00020 15075 10 Gut 0.53 protein_coding missense_variant MODERATE 241G>A Ala81Thr
M0147402 ENGMLIPH_00020 15113 10 Gut 0.53 protein_coding synonymous_variant LOW 279A>G Ala93Ala
M0147403 ENGMLIPH_00020 15128 10 Gut 0.53 protein_coding synonymous_variant LOW 294T>C Ile98Ile
M0147404 ENGMLIPH_00020 15248 10 Gut 0.53 protein_coding synonymous_variant LOW 414A>G Leu138Leu
M0147405 ENGMLIPH_00021 15439 10 Gut 0.53 protein_coding synonymous_variant LOW 39C>T Asp13Asp
M0147406 ENGMLIPH_00021 15457 10 Gut 0.53 protein_coding synonymous_variant LOW 57T>C Gly19Gly
M0147407 ENGMLIPH_00021 15526 10 Gut 0.53 protein_coding synonymous_variant LOW 126T>C His42His
M0147408 ENGMLIPH_00021 15531 10 Gut 0.53 protein_coding missense_variant MODERATE 131A>G Lys44Arg
M0147409 ENGMLIPH_00021 15544 10 Gut 0.53 protein_coding synonymous_variant LOW 144T>C Ala48Ala
M0147410 ENGMLIPH_00022 15710 8 Gut 0.42 protein_coding missense_variant MODERATE 125G>A Gly42Glu
M0147411 ENGMLIPH_00022 15726 10 Gut 0.53 protein_coding synonymous_variant LOW 141G>T Thr47Thr
M0147412 ENGMLIPH_00022 15757 10 Gut 0.53 protein_coding missense_variant MODERATE 172A>G Lys58Glu
M0147413 ENGMLIPH_00022 15903 10 Gut 0.53 protein_coding synonymous_variant LOW 318A>G Pro106Pro
M0147414 ENGMLIPH_00022 15905 8 Gut 0.42 protein_coding missense_variant MODERATE 320T>C Phe107Ser
M0147415 ENGMLIPH_00022 15911 10 Gut 0.53 protein_coding missense_variant MODERATE 326A>T His109Leu
M0147416 ENGMLIPH_00023 16153 10 Gut 0.53 protein_coding synonymous_variant LOW 120C>T Ser40Ser
M0147417 ENGMLIPH_00023 16154 10 Gut 0.53 protein_coding missense_variant MODERATE 121G>T Ala41Ser
M0147418 ENGMLIPH_00023 16177 10 Gut 0.53 protein_coding synonymous_variant LOW 144C>T Ser48Ser
M0147419 ENGMLIPH_00023 16208 11 Gut 0.58 protein_coding missense_variant MODERATE 175A>G Asn59Asp
M0147420 ENGMLIPH_00023 16303 10 Gut 0.53 protein_coding synonymous_variant LOW 270C>T His90His
M0147421 ENGMLIPH_00023 16312 10 Gut 0.53 protein_coding synonymous_variant LOW 279G>A Glu93Glu
M0147422 ENGMLIPH_00023 16315 10 Gut 0.53 protein_coding synonymous_variant LOW 282T>C Tyr94Tyr
M0147423 ENGMLIPH_00023 16318 10 Gut 0.53 protein_coding synonymous_variant LOW 285G>T Leu95Leu
M0147424 ENGMLIPH_00023 16324 10 Gut 0.53 protein_coding synonymous_variant LOW 291C>A Gly97Gly
M0147425 ENGMLIPH_00024 16495 9 Gut 0.47 protein_coding synonymous_variant LOW 120G>A Val40Val
M0147426 ENGMLIPH_00024 16603 10 Gut 0.53 protein_coding synonymous_variant LOW 228T>C Thr76Thr
M0147427 ENGMLIPH_00016 16704 10 Gut 0.53 protein_coding upstream_gene_variant MODIFIER -4663T>C None
M0147428 ENGMLIPH_00025 17156 9 Gut 0.47 protein_coding synonymous_variant LOW 375A>G Lys125Lys
M0147429 ENGMLIPH_00025 17184 9 Gut 0.47 protein_coding missense_variant MODERATE 403T>A Cys135Ser
M0147430 ENGMLIPH_00025 17231 9 Gut 0.47 protein_coding synonymous_variant LOW 450A>G Lys150Lys
M0147431 ENGMLIPH_00025 17525 9 Gut 0.47 protein_coding synonymous_variant LOW 744A>G Gly248Gly
M0147432 ENGMLIPH_00025 17636 9 Gut 0.47 protein_coding synonymous_variant LOW 855A>G Pro285Pro
M0147433 ENGMLIPH_00025 17681 9 Gut 0.47 protein_coding synonymous_variant LOW 900A>T Leu300Leu
M0147434 ENGMLIPH_00025 18002 9 Gut 0.47 protein_coding synonymous_variant LOW 1221T>C Asn407Asn
M0147435 ENGMLIPH_00025 18050 9 Gut 0.47 protein_coding synonymous_variant LOW 1269A>G Gly423Gly
M0147436 ENGMLIPH_00025 18309 9 Gut 0.47 protein_coding synonymous_variant LOW 1528C>T Leu510Leu
M0147437 ENGMLIPH_00025 18389 7 Gut 0.37 protein_coding synonymous_variant LOW 1608T>C Asn536Asn
M0147438 ENGMLIPH_00025 18466 10 Gut 0.53 protein_coding missense_variant MODERATE 1685A>C Tyr562Ser
M0147439 ENGMLIPH_00025 18500 9 Gut 0.47 protein_coding synonymous_variant LOW 1719C>T Pro573Pro
M0147440 ENGMLIPH_00025 18636 9 Gut 0.47 protein_coding missense_variant MODERATE 1855T>A Tyr619Asn
M0147441 ENGMLIPH_00025 18637 9 Gut 0.47 protein_coding missense_variant MODERATE 1856A>G Tyr619Cys
M0147442 ENGMLIPH_00025 18986 10 Gut 0.53 protein_coding synonymous_variant LOW 2205G>A Thr735Thr
M0147443 ENGMLIPH_00026 19542 10 Gut 0.53 protein_coding synonymous_variant LOW 171C>A Val57Val
M0147444 ENGMLIPH_00027 19916 10 Gut 0.53 protein_coding missense_variant MODERATE 311G>A Ser104Asn
M0147445 ENGMLIPH_00028 20369 9 Gut 0.47 protein_coding synonymous_variant LOW 156G>A Gln52Gln
M0147446 ENGMLIPH_00028 20379 9 Gut 0.47 protein_coding missense_variant MODERATE 166T>G Ser56Ala
M0147447 ENGMLIPH_00029 21545 9 Gut 0.47 protein_coding synonymous_variant LOW 273C>T Ser91Ser
M0147448 ENGMLIPH_00029 21555 9 Gut 0.47 protein_coding missense_variant MODERATE 283A>G Asn95Asp
M0147449 ENGMLIPH_00029 21591 9 Gut 0.47 protein_coding synonymous_variant LOW 319C>A Arg107Arg
M0147450 ENGMLIPH_00029 21755 9 Gut 0.47 protein_coding synonymous_variant LOW 483A>G Arg161Arg
M0147451 ENGMLIPH_00029 21779 7 Gut 0.37 protein_coding synonymous_variant LOW 507T>A Ser169Ser
M0147452 ENGMLIPH_00029 21800 9 Gut 0.47 protein_coding synonymous_variant LOW 528C>T Asp176Asp
M0147453 ENGMLIPH_00030 21981 9 Gut 0.47 protein_coding synonymous_variant LOW 72A>C Gly24Gly
M0147454 ENGMLIPH_00030 22032 7 Gut 0.37 protein_coding synonymous_variant LOW 123A>T Ser41Ser
M0147455 ENGMLIPH_00030 22316 7 Gut 0.37 protein_coding missense_variant MODERATE 407A>G Asn136Ser
M0147456 ENGMLIPH_00030 22332 7 Gut 0.37 protein_coding missense_variant MODERATE 423T>A Asp141Glu
M0147457 ENGMLIPH_00030 22472 7 Gut 0.37 protein_coding missense_variant MODERATE 563A>G Gln188Arg
M0147458 ENGMLIPH_00030 22525 9 Gut 0.47 protein_coding missense_variant MODERATE 616G>A Glu206Lys
M0147459 ENGMLIPH_00030 22532 9 Gut 0.47 protein_coding missense_variant MODERATE 623C>A Thr208Asn
M0147460 ENGMLIPH_00030 22602 9 Gut 0.47 protein_coding synonymous_variant LOW 693T>C Arg231Arg
M0147461 ENGMLIPH_00030 22644 7 Gut 0.37 protein_coding synonymous_variant LOW 735A>G Lys245Lys
M0147462 ENGMLIPH_00030 23100 7 Gut 0.37 protein_coding synonymous_variant LOW 1191A>G Glu397Glu
M0147463 ENGMLIPH_00030 23190 7 Gut 0.37 protein_coding synonymous_variant LOW 1281T>C Asn427Asn
M0147464 ENGMLIPH_00030 23208 7 Gut 0.37 protein_coding synonymous_variant LOW 1299T>C Ile433Ile
M0147465 ENGMLIPH_00032 23788 9 Gut 0.47 protein_coding synonymous_variant LOW 393T>C Asn131Asn
M0147466 ENGMLIPH_00032 23975 7 Gut 0.37 protein_coding missense_variant MODERATE 580C>A His194Asn
M0147467 ENGMLIPH_00032 24025 9 Gut 0.47 protein_coding synonymous_variant LOW 630A>G Ala210Ala
M0147468 ENGMLIPH_00032 24037 7 Gut 0.37 protein_coding synonymous_variant LOW 642A>G Val214Val
M0147469 ENGMLIPH_00032 24347 9 Gut 0.47 protein_coding synonymous_variant LOW 952T>C Leu318Leu
M0147470 ENGMLIPH_00033 24489 8 Gut 0.42 protein_coding synonymous_variant LOW 6G>A Lys2Lys
M0147471 ENGMLIPH_00033 24531 8 Gut 0.42 protein_coding synonymous_variant LOW 48G>T Gly16Gly
M0147472 ENGMLIPH_00033 24992 8 Gut 0.42 protein_coding missense_variant MODERATE 509C>T Thr170Ile
M0147473 ENGMLIPH_00033 25134 9 Gut 0.47 protein_coding synonymous_variant LOW 651C>A Val217Val
M0147474 ENGMLIPH_00033 25200 9 Gut 0.47 protein_coding synonymous_variant LOW 717A>G Gly239Gly
M0147475 ENGMLIPH_00033 25229 8 Gut 0.42 protein_coding missense_variant MODERATE 746A>T Tyr249Phe
M0147476 ENGMLIPH_00033 25233 8 Gut 0.42 protein_coding synonymous_variant LOW 750T>C Leu250Leu
M0147477 ENGMLIPH_00033 25293 9 Gut 0.47 protein_coding synonymous_variant LOW 810T>C Ile270Ile
M0147478 ENGMLIPH_00033 25367 10 Gut 0.53 protein_coding missense_variant MODERATE 884A>C Glu295Ala
M0147479 ENGMLIPH_00033 25410 9 Gut 0.47 protein_coding synonymous_variant LOW 927G>A Glu309Glu
M0147480 ENGMLIPH_00033 25412 9 Gut 0.47 protein_coding missense_variant MODERATE 929A>T Tyr310Phe
M0147481 ENGMLIPH_00033 25974 9 Gut 0.47 protein_coding synonymous_variant LOW 1491A>G Lys497Lys
M0147482 ENGMLIPH_00033 26118 9 Gut 0.47 protein_coding synonymous_variant LOW 1635G>A Gln545Gln
M0147483 ENGMLIPH_00033 26133 9 Gut 0.47 protein_coding synonymous_variant LOW 1650T>C Thr550Thr
M0147484 ENGMLIPH_00033 26176 9 Gut 0.47 protein_coding synonymous_variant LOW 1693C>T Leu565Leu
M0147485 ENGMLIPH_00035 26642 9 Gut 0.47 protein_coding synonymous_variant LOW 105A>G Thr35Thr
M0147486 ENGMLIPH_00035 26816 9 Gut 0.47 protein_coding synonymous_variant LOW 279C>T Val93Val
M0147487 ENGMLIPH_00035 27056 9 Gut 0.47 protein_coding synonymous_variant LOW 519A>G Pro173Pro
M0147488 ENGMLIPH_00035 27059 9 Gut 0.47 protein_coding synonymous_variant LOW 522G>A Glu174Glu
M0147489 ENGMLIPH_00035 27146 9 Gut 0.47 protein_coding synonymous_variant LOW 609C>T Asp203Asp
M0147490 ENGMLIPH_00035 27251 9 Gut 0.47 protein_coding synonymous_variant LOW 714T>A Gly238Gly
M0147491 ENGMLIPH_00035 27360 9 Gut 0.47 protein_coding synonymous_variant LOW 823C>A Arg275Arg
M0147492 ENGMLIPH_00035 27438 9 Gut 0.47 protein_coding missense_variant MODERATE 901G>A Val301Ile
M0147493 ENGMLIPH_00035 27439 9 Gut 0.47 protein_coding missense_variant MODERATE 902T>C Val301Ala
M0147494 ENGMLIPH_00035 27635 9 Gut 0.47 protein_coding synonymous_variant LOW 1098G>A Ala366Ala
M0147495 ENGMLIPH_00035 27743 9 Gut 0.47 protein_coding synonymous_variant LOW 1206A>C Ala402Ala
M0147496 ENGMLIPH_00035 27797 8 Gut 0.42 protein_coding synonymous_variant LOW 1260T>C Phe420Phe
M0147497 ENGMLIPH_00036 27940 9 Gut 0.47 protein_coding missense_variant MODERATE 89A>G Lys30Arg
M0147498 ENGMLIPH_00036 27944 9 Gut 0.47 protein_coding synonymous_variant LOW 93A>G Glu31Glu
M0147499 ENGMLIPH_00037 28195 9 Gut 0.47 protein_coding synonymous_variant LOW 48T>C Ser16Ser
M0147500 ENGMLIPH_00037 28324 9 Gut 0.47 protein_coding synonymous_variant LOW 177A>G Val59Val
M0147501 ENGMLIPH_00037 28331 9 Gut 0.47 protein_coding synonymous_variant LOW 184T>C Leu62Leu
M0147502 ENGMLIPH_00037 28583 9 Gut 0.47 protein_coding missense_variant MODERATE 436G>A Glu146Lys
M0147503 ENGMLIPH_00037 28622 9 Gut 0.47 protein_coding missense_variant MODERATE 475G>A Asp159Asn
M0147504 ENGMLIPH_00037 28645 9 Gut 0.47 protein_coding synonymous_variant LOW 498G>A Gln166Gln
M0147505 ENGMLIPH_00037 28663 9 Gut 0.47 protein_coding synonymous_variant LOW 516C>T Asp172Asp
M0147506 ENGMLIPH_00037 28834 9 Gut 0.47 protein_coding synonymous_variant LOW 687A>G Lys229Lys
M0147507 ENGMLIPH_00037 28852 9 Gut 0.47 protein_coding synonymous_variant LOW 705C>A Ala235Ala
M0147508 ENGMLIPH_00037 29071 9 Gut 0.47 protein_coding synonymous_variant LOW 924A>G Arg308Arg
M0147509 ENGMLIPH_00037 29212 9 Gut 0.47 protein_coding synonymous_variant LOW 1065G>A Gln355Gln
M0147510 ENGMLIPH_00037 29278 9 Gut 0.47 protein_coding synonymous_variant LOW 1131C>A Ile377Ile
M0147511 ENGMLIPH_00037 29348 9 Gut 0.47 protein_coding synonymous_variant LOW 1201C>T Leu401Leu
M0147512 ENGMLIPH_00037 29351 9 Gut 0.47 protein_coding synonymous_variant LOW 1204T>C Leu402Leu
M0147513 ENGMLIPH_00037 29359 9 Gut 0.47 protein_coding synonymous_variant LOW 1212T>A Ile404Ile
M0147514 ENGMLIPH_00037 29395 9 Gut 0.47 protein_coding synonymous_variant LOW 1248T>C Pro416Pro
M0147515 ENGMLIPH_00037 29497 9 Gut 0.47 protein_coding synonymous_variant LOW 1350A>G Gln450Gln
M0147516 ENGMLIPH_00037 29509 9 Gut 0.47 protein_coding synonymous_variant LOW 1362G>A Val454Val
M0147517 ENGMLIPH_00037 29710 9 Gut 0.47 protein_coding synonymous_variant LOW 1563A>G Glu521Glu
M0147518 ENGMLIPH_00037 29764 9 Gut 0.47 protein_coding synonymous_variant LOW 1617G>A Lys539Lys
M0147519 ENGMLIPH_00037 29797 9 Gut 0.47 protein_coding synonymous_variant LOW 1650A>G Gly550Gly
M0147520 ENGMLIPH_00038 30113 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -28T>C None
M0147521 ENGMLIPH_00038 30133 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -8A>T None
M0147522 ENGMLIPH_00038 30195 9 Gut 0.47 protein_coding missense_variant MODERATE 55A>C Thr19Pro
M0147523 ENGMLIPH_00038 30197 9 Gut 0.47 protein_coding synonymous_variant LOW 57C>T Thr19Thr
M0147524 ENGMLIPH_00038 30311 9 Gut 0.47 protein_coding synonymous_variant LOW 171T>C Asp57Asp
M0147525 ENGMLIPH_00038 30353 9 Gut 0.47 protein_coding synonymous_variant LOW 213G>A Gln71Gln
M0147526 ENGMLIPH_00038 30411 9 Gut 0.47 protein_coding missense_variant MODERATE 271A>G Thr91Ala
M0147527 ENGMLIPH_00038 30470 9 Gut 0.47 protein_coding synonymous_variant LOW 330G>A Arg110Arg
M0147528 ENGMLIPH_00038 30485 9 Gut 0.47 protein_coding synonymous_variant LOW 345A>G Val115Val
M0147529 ENGMLIPH_00038 30609 9 Gut 0.47 protein_coding missense_variant MODERATE 469G>A Ala157Thr
M0147530 ENGMLIPH_00039 30624 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -4A>G None
M0147531 ENGMLIPH_00039 30690 9 Gut 0.47 protein_coding synonymous_variant LOW 63A>G Val21Val
M0147532 ENGMLIPH_00039 30707 9 Gut 0.47 protein_coding missense_variant MODERATE 80A>G Glu27Gly
M0147533 ENGMLIPH_00039 30712 9 Gut 0.47 protein_coding missense_variant MODERATE 85A>G Ile29Val
M0147534 ENGMLIPH_00040 30780 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -47T>C None
M0147535 ENGMLIPH_00040 30787 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -40A>G None
M0147536 ENGMLIPH_00040 30839 10 Gut 0.53 protein_coding missense_variant MODERATE 13T>A Phe5Ile
M0147537 ENGMLIPH_00040 30847 9 Gut 0.47 protein_coding synonymous_variant LOW 21A>G Leu7Leu
M0147538 ENGMLIPH_00040 30970 9 Gut 0.47 protein_coding synonymous_variant LOW 144C>T Tyr48Tyr
M0147539 ENGMLIPH_00040 31057 9 Gut 0.47 protein_coding synonymous_variant LOW 231A>G Thr77Thr
M0147540 ENGMLIPH_00041 31295 9 Gut 0.47 protein_coding synonymous_variant LOW 25T>C Leu9Leu
M0147541 ENGMLIPH_00041 31411 9 Gut 0.47 protein_coding synonymous_variant LOW 141A>G Leu47Leu
M0147542 ENGMLIPH_00041 31436 9 Gut 0.47 protein_coding missense_variant MODERATE 166A>C Ile56Leu
M0147543 ENGMLIPH_00041 31531 9 Gut 0.47 protein_coding synonymous_variant LOW 261A>G Arg87Arg
M0147544 ENGMLIPH_00043 31774 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -463A>G None
M0147545 ENGMLIPH_00043 31834 8 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -403A>G None
M0147546 ENGMLIPH_00042 31970 8 Gut 0.42 protein_coding synonymous_variant LOW 105G>A Ala35Ala
M0147547 ENGMLIPH_00043 32335 8 Gut 0.42 protein_coding synonymous_variant LOW 99T>A Ala33Ala
M0147548 ENGMLIPH_00044 32775 8 Gut 0.42 protein_coding synonymous_variant LOW 270G>A Lys90Lys
M0147549 ENGMLIPH_00045 32856 8 Gut 0.42 protein_coding synonymous_variant LOW 39T>C Ser13Ser
M0147550 ENGMLIPH_00045 33032 8 Gut 0.42 protein_coding missense_variant MODERATE 215G>A Arg72Lys
M0147551 ENGMLIPH_00045 33483 8 Gut 0.42 protein_coding synonymous_variant LOW 666G>A Lys222Lys
M0147552 ENGMLIPH_00045 33505 8 Gut 0.42 protein_coding missense_variant MODERATE 688A>G Lys230Glu
M0147553 ENGMLIPH_00045 33846 8 Gut 0.42 protein_coding synonymous_variant LOW 1029A>G Lys343Lys
M0147554 ENGMLIPH_00045 33903 8 Gut 0.42 protein_coding synonymous_variant LOW 1086T>A Pro362Pro
M0147555 ENGMLIPH_00042 34189 5 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -2115T>C None
M0147556 ENGMLIPH_00042 34247 5 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -2173G>T None
M0147557 ENGMLIPH_00042 34254 5 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -2180T>A None
M0147558 ENGMLIPH_00042 34273 8 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -2199G>T None
M0147559 ENGMLIPH_00042 34419 8 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -2345G>A None
M0147560 ENGMLIPH_00042 34568 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -2494A>C None
M0147561 ENGMLIPH_00042 34574 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -2500C>T None
M0147562 ENGMLIPH_00042 34617 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -2543C>T None
M0147563 ENGMLIPH_00046 34776 8 Gut 0.42 protein_coding synonymous_variant LOW 114T>C Tyr38Tyr
M0147564 ENGMLIPH_00046 34828 8 Gut 0.42 protein_coding missense_variant MODERATE 166G>A Ala56Thr
M0147565 ENGMLIPH_00046 34862 9 Gut 0.47 protein_coding missense_variant MODERATE 200G>A Arg67Gln
M0147566 ENGMLIPH_00047 34945 8 Gut 0.42 protein_coding synonymous_variant LOW 51G>A Gln17Gln
M0147567 ENGMLIPH_00047 34959 8 Gut 0.42 protein_coding missense_variant MODERATE 65A>T Gln22Leu
M0147568 ENGMLIPH_00047 35030 8 Gut 0.42 protein_coding missense_variant MODERATE 136G>A Asp46Asn
M0147569 ENGMLIPH_00047 35080 8 Gut 0.42 protein_coding synonymous_variant LOW 186A>G Glu62Glu
M0147570 ENGMLIPH_00002 2355 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -1594T>C None
M0147571 ENGMLIPH_00021 15596 3 Gut 0.16 protein_coding missense_variant MODERATE 196A>G Ile66Val
M0147572 ENGMLIPH_00035 26738 3 Gut 0.16 protein_coding missense_variant MODERATE 201G>T Gln67His
M0147573 ENGMLIPH_00037 29856 3 Gut 0.16 protein_coding missense_variant MODERATE 1709C>T Thr570Ile
M0147574 ENGMLIPH_00042 32081 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -7A>C None
M0147575 ENGMLIPH_00042 32091 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -17T>A None
M0147576 ENGMLIPH_00042 32098 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -24T>C None
M0147577 ENGMLIPH_00042 32106 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -32G>A None
M0147578 ENGMLIPH_00042 32122 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -48T>A None
M0147579 ENGMLIPH_00042 32123 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -49G>A None
M0147580 ENGMLIPH_00042 32128 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -54G>A None
M0147581 ENGMLIPH_00042 34259 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2185C>T None
M0147582 ENGMLIPH_00042 34262 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2188A>G None
M0147583 ENGMLIPH_00042 34289 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2215C>T None
M0147584 ENGMLIPH_00042 34290 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2216T>A None
M0147585 ENGMLIPH_00042 34296 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2222A>G None
M0147586 ENGMLIPH_00042 34327 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2253A>T None
M0147587 ENGMLIPH_00042 34472 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2398C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term