Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C194
  Reference Plasmid   CP103229.1
  Reference Plasmid Size   40660
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0147589 MECPMACN_00001 282 7 Gut 0.35 protein_coding synonymous_variant LOW 321C>T Ala107Ala
M0147590 MECPMACN_00028 19735 9 Gut 0.45 protein_coding missense_variant MODERATE 1047A>C Lys349Asn
M0147591 MECPMACN_00032 21923 3 Gut 0.15 protein_coding missense_variant MODERATE 121G>A Val41Ile
M0147592 MECPMACN_00033 22723 9 Gut 0.45 protein_coding missense_variant MODERATE 403G>A Glu135Lys
M0147593 MECPMACN_00035 23855 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -806T>A None
M0147594 MECPMACN_00035 23856 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -805A>T None
M0147595 MECPMACN_00035 24374 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -287C>T None
M0147596 MECPMACN_00035 24462 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -199A>G None
M0147597 MECPMACN_00035 24596 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -65A>G None
M0147598 MECPMACN_00035 24614 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -47A>G None
M0147599 MECPMACN_00035 24628 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -33T>C None
M0147600 MECPMACN_00035 24656 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -5T>A None
M0147601 MECPMACN_00035 24687 5 Gut 0.25 protein_coding synonymous_variant LOW 27A>C Gly9Gly
M0147602 MECPMACN_00035 24879 5 Gut 0.25 protein_coding synonymous_variant LOW 219A>G Leu73Leu
M0147603 MECPMACN_00035 25020 5 Gut 0.25 protein_coding synonymous_variant LOW 360A>G Leu120Leu
M0147604 MECPMACN_00035 25080 3 Gut 0.15 protein_coding synonymous_variant LOW 420G>A Lys140Lys
M0147605 MECPMACN_00036 25369 3 Gut 0.15 protein_coding synonymous_variant LOW 153G>A Lys51Lys
M0147606 MECPMACN_00037 25526 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -827C>G None
M0147607 MECPMACN_00037 25534 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -819C>T None
M0147608 MECPMACN_00037 25654 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -699T>C None
M0147609 MECPMACN_00015 9098 6 Gut 0.30 protein_coding missense_variant MODERATE 70A>G Thr24Ala
M0147610 MECPMACN_00015 9143 6 Gut 0.30 protein_coding missense_variant MODERATE 115T>C Ser39Pro
M0147611 MECPMACN_00015 9230 6 Gut 0.30 protein_coding missense_variant MODERATE 202T>A Phe68Ile
M0147612 MECPMACN_00016 9657 6 Gut 0.30 protein_coding synonymous_variant LOW 603C>T Phe201Phe
M0147613 MECPMACN_00016 10077 6 Gut 0.30 protein_coding synonymous_variant LOW 183C>T Phe61Phe
M0147614 MECPMACN_00006 10293 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4498C>T None
M0147615 MECPMACN_00006 10343 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4548G>C None
M0147616 MECPMACN_00006 10344 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4549C>A None
M0147617 MECPMACN_00006 10405 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4610T>A None
M0147618 MECPMACN_00006 10407 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4612T>C None
M0147619 MECPMACN_00006 10417 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4622G>A None
M0147620 MECPMACN_00006 10454 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4659A>C None
M0147621 MECPMACN_00006 10629 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4834T>C None
M0147622 MECPMACN_00017 10784 6 Gut 0.30 protein_coding missense_variant MODERATE 497G>A Gly166Asp
M0147623 MECPMACN_00008 11398 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4757T>C None
M0147624 MECPMACN_00008 11417 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4776A>T None
M0147625 MECPMACN_00018 11479 6 Gut 0.30 protein_coding synonymous_variant LOW 54T>C Tyr18Tyr
M0147626 MECPMACN_00018 11522 6 Gut 0.30 protein_coding missense_variant MODERATE 97A>G Thr33Ala
M0147627 MECPMACN_00018 11523 6 Gut 0.30 protein_coding missense_variant MODERATE 98C>T Thr33Ile
M0147628 MECPMACN_00018 11574 6 Gut 0.30 protein_coding missense_variant MODERATE 149C>T Thr50Ile
M0147629 MECPMACN_00018 11584 6 Gut 0.30 protein_coding missense_variant MODERATE 159A>C Lys53Asn
M0147630 MECPMACN_00018 11629 6 Gut 0.30 protein_coding missense_variant MODERATE 204T>A Asp68Glu
M0147631 MECPMACN_00018 11638 6 Gut 0.30 protein_coding missense_variant MODERATE 213A>T Lys71Asn
M0147632 MECPMACN_00018 11686 6 Gut 0.30 protein_coding missense_variant MODERATE 261T>A Asp87Glu
M0147633 MECPMACN_00018 11731 6 Gut 0.30 protein_coding synonymous_variant LOW 306A>G Gly102Gly
M0147634 MECPMACN_00018 11761 4 Gut 0.20 protein_coding synonymous_variant LOW 336T>C Asn112Asn
M0147635 MECPMACN_00009 11773 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4786G>A None
M0147636 MECPMACN_00009 11776 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4789T>A None
M0147637 MECPMACN_00019 11800 6 Gut 0.30 protein_coding missense_variant MODERATE 14C>T Ser5Phe
M0147638 MECPMACN_00019 11810 6 Gut 0.30 protein_coding synonymous_variant LOW 24C>T Ile8Ile
M0147639 MECPMACN_00019 11842 4 Gut 0.20 protein_coding missense_variant MODERATE 56C>T Thr19Ile
M0147640 MECPMACN_00019 11879 4 Gut 0.20 protein_coding synonymous_variant LOW 93C>G Ala31Ala
M0147641 MECPMACN_00019 11894 4 Gut 0.20 protein_coding synonymous_variant LOW 108C>T Ala36Ala
M0147642 MECPMACN_00019 12059 4 Gut 0.20 protein_coding synonymous_variant LOW 273A>G Leu91Leu
M0147643 MECPMACN_00020 12330 6 Gut 0.30 protein_coding synonymous_variant LOW 228A>G Gly76Gly
M0147644 MECPMACN_00020 12339 6 Gut 0.30 protein_coding synonymous_variant LOW 237A>G Arg79Arg
M0147645 MECPMACN_00020 12382 4 Gut 0.20 protein_coding missense_variant MODERATE 280G>A Val94Ile
M0147646 MECPMACN_00021 12605 4 Gut 0.20 protein_coding synonymous_variant LOW 198C>T Thr66Thr
M0147647 MECPMACN_00022 12848 6 Gut 0.30 protein_coding missense_variant MODERATE 65G>A Ser22Asn
M0147648 MECPMACN_00022 13113 6 Gut 0.30 protein_coding synonymous_variant LOW 330A>G Glu110Glu
M0147649 MECPMACN_00022 13347 6 Gut 0.30 protein_coding synonymous_variant LOW 564A>G Lys188Lys
M0147650 MECPMACN_00022 13386 4 Gut 0.20 protein_coding synonymous_variant LOW 603T>C Gly201Gly
M0147651 MECPMACN_00022 13393 4 Gut 0.20 protein_coding missense_variant MODERATE 610G>A Val204Met
M0147652 MECPMACN_00022 13395 4 Gut 0.20 protein_coding synonymous_variant LOW 612G>C Val204Val
M0147653 MECPMACN_00022 13462 6 Gut 0.30 protein_coding missense_variant MODERATE 679G>A Asp227Asn
M0147654 MECPMACN_00022 14178 6 Gut 0.30 protein_coding synonymous_variant LOW 1395A>G Ala465Ala
M0147655 MECPMACN_00022 14205 4 Gut 0.20 protein_coding synonymous_variant LOW 1422A>T Gly474Gly
M0147656 MECPMACN_00022 14311 6 Gut 0.30 protein_coding synonymous_variant LOW 1528C>T Leu510Leu
M0147657 MECPMACN_00023 15383 6 Gut 0.30 protein_coding missense_variant MODERATE 124T>A Ser42Thr
M0147658 MECPMACN_00025 16980 6 Gut 0.30 protein_coding synonymous_variant LOW 396T>C Ala132Ala
M0147659 MECPMACN_00025 17211 6 Gut 0.30 protein_coding synonymous_variant LOW 627T>A Ala209Ala
M0147660 MECPMACN_00025 17278 6 Gut 0.30 protein_coding synonymous_variant LOW 694C>T Leu232Leu
M0147661 MECPMACN_00025 17325 6 Gut 0.30 protein_coding synonymous_variant LOW 741T>A Val247Val
M0147662 MECPMACN_00025 17577 6 Gut 0.30 protein_coding synonymous_variant LOW 993A>G Pro331Pro
M0147663 MECPMACN_00026 17762 6 Gut 0.30 protein_coding synonymous_variant LOW 123G>T Ala41Ala
M0147664 MECPMACN_00026 18051 4 Gut 0.20 protein_coding missense_variant MODERATE 412G>A Val138Met
M0147665 MECPMACN_00029 20390 4 Gut 0.20 protein_coding synonymous_variant LOW 591C>T Phe197Phe
M0147666 MECPMACN_00029 20606 6 Gut 0.30 protein_coding synonymous_variant LOW 807G>A Ala269Ala
M0147667 MECPMACN_00030 20901 6 Gut 0.30 protein_coding missense_variant MODERATE 72T>G Asn24Lys
M0147668 MECPMACN_00031 21008 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -11T>A None
M0147669 MECPMACN_00031 21070 6 Gut 0.30 protein_coding missense_variant MODERATE 52T>C Phe18Leu
M0147670 MECPMACN_00031 21387 6 Gut 0.30 protein_coding synonymous_variant LOW 369T>A Leu123Leu
M0147671 MECPMACN_00031 21739 4 Gut 0.20 protein_coding missense_variant MODERATE 721C>T Leu241Phe
M0147672 MECPMACN_00032 22033 4 Gut 0.20 protein_coding synonymous_variant LOW 231C>T Ser77Ser
M0147673 MECPMACN_00032 22104 4 Gut 0.20 protein_coding missense_variant MODERATE 302T>A Ile101Asn
M0147674 MECPMACN_00033 22407 6 Gut 0.30 protein_coding synonymous_variant LOW 87G>A Leu29Leu
M0147675 MECPMACN_00033 22635 6 Gut 0.30 protein_coding synonymous_variant LOW 315G>A Gly105Gly
M0147676 MECPMACN_00033 22674 4 Gut 0.20 protein_coding synonymous_variant LOW 354G>A Lys118Lys
M0147677 MECPMACN_00033 22716 4 Gut 0.20 protein_coding synonymous_variant LOW 396T>C Tyr132Tyr
M0147678 MECPMACN_00033 22878 6 Gut 0.30 protein_coding synonymous_variant LOW 558G>T Thr186Thr
M0147679 MECPMACN_00034 23114 4 Gut 0.20 protein_coding synonymous_variant LOW 132C>T Ser44Ser
M0147680 MECPMACN_00034 23162 4 Gut 0.20 protein_coding synonymous_variant LOW 180G>A Lys60Lys
M0147681 MECPMACN_00034 23165 6 Gut 0.30 protein_coding synonymous_variant LOW 183G>A Glu61Glu
M0147682 MECPMACN_00034 23252 4 Gut 0.20 protein_coding synonymous_variant LOW 270G>A Lys90Lys
M0147683 MECPMACN_00034 23355 4 Gut 0.20 protein_coding missense_variant MODERATE 373A>G Asn125Asp
M0147684 MECPMACN_00034 23358 4 Gut 0.20 protein_coding synonymous_variant LOW 376C>T Leu126Leu
M0147685 MECPMACN_00034 23414 4 Gut 0.20 protein_coding synonymous_variant LOW 432A>T Thr144Thr
M0147686 MECPMACN_00034 23477 4 Gut 0.20 protein_coding synonymous_variant LOW 495G>A Gly165Gly
M0147687 MECPMACN_00035 23634 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -1027G>T None
M0147688 MECPMACN_00035 24149 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -512T>G None
M0147689 MECPMACN_00035 24202 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -459A>T None
M0147690 MECPMACN_00035 24205 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -456A>G None
M0147691 MECPMACN_00035 24212 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -449C>T None
M0147692 MECPMACN_00035 24214 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -447G>A None
M0147693 MECPMACN_00035 24227 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -434T>A None
M0147694 MECPMACN_00035 24255 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -406A>G None
M0147695 MECPMACN_00035 24256 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -405G>T None
M0147696 MECPMACN_00035 24263 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -398G>A None
M0147697 MECPMACN_00035 24272 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -389T>C None
M0147698 MECPMACN_00035 24297 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -364G>A None
M0147699 MECPMACN_00035 24322 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -339T>C None
M0147700 MECPMACN_00035 24323 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -338G>A None
M0147701 MECPMACN_00004 1771 4 Gut 0.20 protein_coding missense_variant MODERATE 1154G>A Arg385Lys
M0147702 MECPMACN_00004 1926 4 Gut 0.20 protein_coding synonymous_variant LOW 999T>A Thr333Thr
M0147703 MECPMACN_00004 2628 4 Gut 0.20 protein_coding missense_variant MODERATE 297G>T Glu99Asp
M0147704 MECPMACN_00005 3353 3 Gut 0.15 protein_coding synonymous_variant LOW 306A>T Ile102Ile
M0147705 MECPMACN_00005 3551 3 Gut 0.15 protein_coding synonymous_variant LOW 108C>T Phe36Phe
M0147706 MECPMACN_00038 27100 3 Gut 0.15 protein_coding synonymous_variant LOW 501T>C Asp167Asp
M0147707 MECPMACN_00038 27148 3 Gut 0.15 protein_coding synonymous_variant LOW 549T>C Asn183Asn
M0147708 MECPMACN_00038 27163 3 Gut 0.15 protein_coding synonymous_variant LOW 564T>C Asp188Asp
M0147709 MECPMACN_00039 28001 4 Gut 0.20 protein_coding synonymous_variant LOW 178C>T Leu60Leu
M0147710 MECPMACN_00039 28044 4 Gut 0.20 protein_coding synonymous_variant LOW 135G>A Lys45Lys
M0147711 MECPMACN_00039 28147 3 Gut 0.15 protein_coding missense_variant MODERATE 32G>A Cys11Tyr
M0147712 MECPMACN_00039 28166 3 Gut 0.15 protein_coding missense_variant MODERATE 13T>A Phe5Ile
M0147713 MECPMACN_00040 28299 4 Gut 0.20 protein_coding synonymous_variant LOW 81A>G Gln27Gln
M0147714 MECPMACN_00040 28898 4 Gut 0.20 protein_coding missense_variant MODERATE 680G>A Ser227Asn
M0147715 MECPMACN_00041 29137 3 Gut 0.15 protein_coding synonymous_variant LOW 198A>G Leu66Leu
M0147716 MECPMACN_00041 29165 4 Gut 0.20 protein_coding missense_variant MODERATE 226C>A Arg76Ser
M0147717 MECPMACN_00041 29184 4 Gut 0.20 protein_coding missense_variant MODERATE 245G>A Arg82Gln
M0147718 MECPMACN_00041 29932 4 Gut 0.20 protein_coding synonymous_variant LOW 993A>G Glu331Glu
M0147719 MECPMACN_00041 30063 4 Gut 0.20 protein_coding missense_variant MODERATE 1124T>C Val375Ala
M0147720 MECPMACN_00041 30241 4 Gut 0.20 protein_coding synonymous_variant LOW 1302A>T Ile434Ile
M0147721 MECPMACN_00041 30458 4 Gut 0.20 protein_coding missense_variant MODERATE 1519A>G Thr507Ala
M0147722 MECPMACN_00042 31162 4 Gut 0.20 protein_coding missense_variant MODERATE 659G>A Arg220Gln
M0147723 MECPMACN_00043 32056 4 Gut 0.20 protein_coding synonymous_variant LOW 447G>A Arg149Arg
M0147724 MECPMACN_00044 32159 4 Gut 0.20 protein_coding synonymous_variant LOW 66A>G Leu22Leu
M0147725 MECPMACN_00045 32849 4 Gut 0.20 protein_coding synonymous_variant LOW 48A>G Gln16Gln
M0147726 MECPMACN_00047 34092 3 Gut 0.15 protein_coding synonymous_variant LOW 93T>C Phe31Phe
M0147727 MECPMACN_00048 34389 4 Gut 0.20 protein_coding missense_variant MODERATE 121G>A Val41Ile
M0147728 MECPMACN_00048 34392 4 Gut 0.20 protein_coding missense_variant MODERATE 124G>A Asp42Asn
M0147729 MECPMACN_00048 34425 3 Gut 0.15 protein_coding missense_variant MODERATE 157C>T Pro53Ser
M0147730 MECPMACN_00048 34426 3 Gut 0.15 protein_coding missense_variant MODERATE 158C>A Pro53His
M0147731 MECPMACN_00049 34617 4 Gut 0.20 protein_coding synonymous_variant LOW 66T>C Asp22Asp
M0147732 MECPMACN_00050 35032 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -141G>A None
M0147733 MECPMACN_00050 35037 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -136A>G None
M0147734 MECPMACN_00050 35073 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -100A>C None
M0147735 MECPMACN_00051 35713 4 Gut 0.20 protein_coding missense_variant MODERATE 313C>T Leu105Phe
M0147736 MECPMACN_00051 35763 4 Gut 0.20 protein_coding synonymous_variant LOW 363T>C Tyr121Tyr
M0147737 MECPMACN_00051 36306 4 Gut 0.20 protein_coding synonymous_variant LOW 906T>C Gly302Gly
M0147738 MECPMACN_00051 36420 4 Gut 0.20 protein_coding synonymous_variant LOW 1020A>G Pro340Pro
M0147739 MECPMACN_00051 37047 4 Gut 0.20 protein_coding synonymous_variant LOW 1647T>C Asn549Asn
M0147740 MECPMACN_00051 37269 4 Gut 0.20 protein_coding synonymous_variant LOW 1869A>G Gly623Gly
M0147741 MECPMACN_00052 37443 4 Gut 0.20 protein_coding missense_variant MODERATE 95C>A Thr32Asn
M0147742 MECPMACN_00052 37690 3 Gut 0.15 protein_coding synonymous_variant LOW 342A>G Glu114Glu
M0147743 MECPMACN_00052 37697 4 Gut 0.20 protein_coding missense_variant MODERATE 349A>G Thr117Ala
M0147744 MECPMACN_00009 6697 5 Gut 0.25 protein_coding synonymous_variant LOW 291C>T Asp97Asp
M0147745 MECPMACN_00001 4100 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3498A>G None
M0147746 MECPMACN_00001 4109 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -3507C>T None
M0147747 MECPMACN_00001 4112 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -3510A>G None
M0147748 MECPMACN_00001 4121 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -3519G>A None
M0147749 MECPMACN_00001 4140 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -3538C>A None
M0147750 MECPMACN_00001 4141 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -3539C>T None
M0147751 MECPMACN_00001 4149 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -3547T>C None
M0147752 MECPMACN_00001 4155 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -3553A>G None
M0147753 MECPMACN_00001 4323 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3721G>A None
M0147754 MECPMACN_00001 4482 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3880T>C None
M0147755 MECPMACN_00013 8086 6 Gut 0.30 protein_coding synonymous_variant LOW 58C>T Leu20Leu
M0147756 MECPMACN_00013 8093 6 Gut 0.30 protein_coding synonymous_variant LOW 51A>G Leu17Leu
M0147757 MECPMACN_00005 8148 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4490T>C None
M0147758 MECPMACN_00005 8178 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4520C>T None
M0147759 MECPMACN_00005 8179 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4521A>G None
M0147760 MECPMACN_00005 8195 6 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4537G>A None
M0147761 MECPMACN_00005 8237 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4579T>C None
M0147762 MECPMACN_00005 8257 5 Gut 0.25 protein_coding upstream_gene_variant MODIFIER -4599C>T None
M0147763 MECPMACN_00001 4004 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -3402G>C None
M0147764 MECPMACN_00008 6485 3 Gut 0.15 protein_coding missense_variant MODERATE 157A>G Ile53Val
M0147765 MECPMACN_00008 6492 3 Gut 0.15 protein_coding missense_variant MODERATE 150A>G Ile50Met
M0147766 MECPMACN_00008 6522 3 Gut 0.15 protein_coding synonymous_variant LOW 120G>A Lys40Lys
M0147767 MECPMACN_00008 6525 3 Gut 0.15 protein_coding synonymous_variant LOW 117A>G Gly39Gly
M0147768 MECPMACN_00008 6546 3 Gut 0.15 protein_coding synonymous_variant LOW 96C>T Leu32Leu
M0147769 MECPMACN_00008 6584 3 Gut 0.15 protein_coding missense_variant MODERATE 58A>G Met20Val
M0147770 MECPMACN_00008 6586 3 Gut 0.15 protein_coding missense_variant MODERATE 56A>G Lys19Arg
M0147771 MECPMACN_00005 8311 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4653T>A None
M0147772 MECPMACN_00005 8336 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4678T>C None
M0147773 MECPMACN_00005 8376 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4718G>A None
M0147774 MECPMACN_00005 8417 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4759G>A None
M0147775 MECPMACN_00005 8419 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4761C>T None
M0147776 MECPMACN_00005 8439 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4781G>A None
M0147777 MECPMACN_00005 8441 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4783C>G None
M0147778 MECPMACN_00005 8444 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4786G>C None
M0147779 MECPMACN_00005 8451 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4793G>C None
M0147780 MECPMACN_00001 631 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -29A>T None
M0147781 MECPMACN_00003 1213 3 Gut 0.15 protein_coding synonymous_variant LOW 73C>T Leu25Leu
M0147782 MECPMACN_00004 2487 3 Gut 0.15 protein_coding synonymous_variant LOW 438A>G Val146Val
M0147783 MECPMACN_00014 8977 4 Gut 0.20 protein_coding stop_gained HIGH 460C>T Gln154*
M0147784 MECPMACN_00014 9027 4 Gut 0.20 protein_coding synonymous_variant LOW 510T>G Arg170Arg
M0147785 MECPMACN_00015 9044 4 Gut 0.20 protein_coding stop_gained HIGH 16C>T Gln6*
M0147786 MECPMACN_00015 9144 4 Gut 0.20 protein_coding missense_variant MODERATE 116C>T Ser39Leu
M0147787 MECPMACN_00015 9151 4 Gut 0.20 protein_coding synonymous_variant LOW 123A>G Ala41Ala
M0147788 MECPMACN_00015 9229 4 Gut 0.20 protein_coding synonymous_variant LOW 201A>C Pro67Pro
M0147789 MECPMACN_00006 10393 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4598T>A None
M0147790 MECPMACN_00006 10395 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4600A>T None
M0147791 MECPMACN_00006 10467 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4672T>G None
M0147792 MECPMACN_00006 10569 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4774C>T None
M0147793 MECPMACN_00017 11011 4 Gut 0.20 protein_coding synonymous_variant LOW 270A>T Ile90Ile
M0147794 MECPMACN_00017 11095 4 Gut 0.20 protein_coding synonymous_variant LOW 186G>A Lys62Lys
M0147795 MECPMACN_00008 11306 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4665A>G None
M0147796 MECPMACN_00008 11339 4 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -4698G>A None
M0147797 MECPMACN_00022 12846 4 Gut 0.20 protein_coding synonymous_variant LOW 63T>C Ala21Ala
M0147798 MECPMACN_00022 13518 4 Gut 0.20 protein_coding synonymous_variant LOW 735A>G Lys245Lys
M0147799 MECPMACN_00023 15319 4 Gut 0.20 protein_coding synonymous_variant LOW 60G>A Ser20Ser
M0147800 MECPMACN_00023 15658 4 Gut 0.20 protein_coding synonymous_variant LOW 399T>C Arg133Arg
M0147801 MECPMACN_00024 16510 4 Gut 0.20 protein_coding missense_variant MODERATE 575G>A Gly192Asp
M0147802 MECPMACN_00025 16653 4 Gut 0.20 protein_coding synonymous_variant LOW 69G>A Leu23Leu
M0147803 MECPMACN_00025 16767 4 Gut 0.20 protein_coding synonymous_variant LOW 183A>G Pro61Pro
M0147804 MECPMACN_00025 16890 4 Gut 0.20 protein_coding missense_variant MODERATE 306C>A Asp102Glu
M0147805 MECPMACN_00025 17517 4 Gut 0.20 protein_coding synonymous_variant LOW 933A>G Gly311Gly
M0147806 MECPMACN_00029 20039 4 Gut 0.20 protein_coding synonymous_variant LOW 240A>G Lys80Lys
M0147807 MECPMACN_00039 28201 3 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -23C>T None
M0147808 MECPMACN_00040 28296 3 Gut 0.15 protein_coding synonymous_variant LOW 78A>G Lys26Lys
M0147809 MECPMACN_00041 29971 3 Gut 0.15 protein_coding synonymous_variant LOW 1032A>G Gln344Gln
M0147810 MECPMACN_00042 31229 3 Gut 0.15 protein_coding synonymous_variant LOW 726T>A Ala242Ala
M0147811 MECPMACN_00042 31445 3 Gut 0.15 protein_coding synonymous_variant LOW 942A>G Lys314Lys
M0147812 MECPMACN_00043 31711 3 Gut 0.15 protein_coding missense_variant MODERATE 102C>A Phe34Leu
M0147813 MECPMACN_00045 33086 3 Gut 0.15 protein_coding synonymous_variant LOW 285T>C Phe95Phe
M0147814 MECPMACN_00051 36612 3 Gut 0.15 protein_coding synonymous_variant LOW 1212A>G Val404Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MECPMACN_00043 9.B.154.1.1 95.2 3.1e-84 1 167 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.154 The Putative Holin-2 (PH-2) Family