Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C203
  Reference Plasmid   CP104730.1
  Reference Plasmid Size   530305
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0147905 LMMPHPJE_00001 39 3 Gut 0.17 protein_coding synonymous_variant LOW 39T>C Ser13Ser
M0147906 LMMPHPJE_00001 51 3 Gut 0.17 protein_coding synonymous_variant LOW 51T>C Phe17Phe
M0147907 LMMPHPJE_00001 93 3 Gut 0.17 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0147908 LMMPHPJE_00001 119 3 Gut 0.17 protein_coding missense_variant MODERATE 119C>T Ala40Val
M0147909 LMMPHPJE_00001 126 3 Gut 0.17 protein_coding synonymous_variant LOW 126C>T Tyr42Tyr
M0147910 LMMPHPJE_00001 196 3 Gut 0.17 protein_coding synonymous_variant LOW 196C>T Leu66Leu
M0147911 LMMPHPJE_00001 235 3 Gut 0.17 protein_coding missense_variant MODERATE 235A>C Lys79Gln
M0147912 LMMPHPJE_00001 261 3 Gut 0.17 protein_coding synonymous_variant LOW 261G>A Ala87Ala
M0147913 LMMPHPJE_00001 300 3 Gut 0.17 protein_coding synonymous_variant LOW 300G>T Gly100Gly
M0147914 LMMPHPJE_00001 357 3 Gut 0.17 protein_coding synonymous_variant LOW 357A>G Lys119Lys
M0147915 LMMPHPJE_00001 373 3 Gut 0.17 protein_coding synonymous_variant LOW 373T>C Leu125Leu
M0147916 LMMPHPJE_00001 414 3 Gut 0.17 protein_coding synonymous_variant LOW 414A>G Gly138Gly
M0147917 LMMPHPJE_00001 435 3 Gut 0.17 protein_coding synonymous_variant LOW 435A>G Leu145Leu
M0147918 LMMPHPJE_00001 446 3 Gut 0.17 protein_coding missense_variant MODERATE 446C>T Ala149Val
M0147919 LMMPHPJE_00001 468 3 Gut 0.17 protein_coding synonymous_variant LOW 468A>G Arg156Arg
M0147920 LMMPHPJE_00001 567 3 Gut 0.17 protein_coding synonymous_variant LOW 567G>A Leu189Leu
M0147921 LMMPHPJE_00001 591 3 Gut 0.17 protein_coding synonymous_variant LOW 591T>C Ile197Ile
M0147922 LMMPHPJE_00001 636 3 Gut 0.17 protein_coding synonymous_variant LOW 636A>G Lys212Lys
M0147923 LMMPHPJE_00001 639 3 Gut 0.17 protein_coding synonymous_variant LOW 639C>T Ile213Ile
M0147924 LMMPHPJE_00001 651 3 Gut 0.17 protein_coding synonymous_variant LOW 651C>T His217His
M0147925 LMMPHPJE_00001 913 3 Gut 0.17 protein_coding synonymous_variant LOW 913C>T Leu305Leu
M0147926 LMMPHPJE_00001 972 3 Gut 0.17 protein_coding synonymous_variant LOW 972T>C Gly324Gly
M0147927 LMMPHPJE_00001 1158 3 Gut 0.17 protein_coding synonymous_variant LOW 1158T>A Ala386Ala
M0147928 LMMPHPJE_00001 1260 3 Gut 0.17 protein_coding synonymous_variant LOW 1260T>C Val420Val
M0147929 LMMPHPJE_00001 1482 3 Gut 0.17 protein_coding synonymous_variant LOW 1482A>G Ala494Ala
M0147930 LMMPHPJE_00001 1626 3 Gut 0.17 protein_coding synonymous_variant LOW 1626C>T Tyr542Tyr
M0147931 LMMPHPJE_00001 1636 3 Gut 0.17 protein_coding synonymous_variant LOW 1636T>C Leu546Leu
M0147932 LMMPHPJE_00001 1644 3 Gut 0.17 protein_coding synonymous_variant LOW 1644A>G Gly548Gly
M0147933 LMMPHPJE_00001 1650 3 Gut 0.17 protein_coding synonymous_variant LOW 1650C>T Asn550Asn
M0147934 LMMPHPJE_00001 1659 3 Gut 0.17 protein_coding synonymous_variant LOW 1659A>G Leu553Leu
M0147935 LMMPHPJE_00001 1728 3 Gut 0.17 protein_coding synonymous_variant LOW 1728G>T Arg576Arg
M0147936 LMMPHPJE_00001 1840 3 Gut 0.17 protein_coding synonymous_variant LOW 1840A>C Arg614Arg
M0147937 LMMPHPJE_00001 1959 3 Gut 0.17 protein_coding synonymous_variant LOW 1959C>T Ser653Ser
M0147938 LMMPHPJE_00001 1992 3 Gut 0.17 protein_coding synonymous_variant LOW 1992A>G Lys664Lys
M0147939 LMMPHPJE_00001 2034 3 Gut 0.17 protein_coding synonymous_variant LOW 2034A>T Gly678Gly
M0147940 LMMPHPJE_00001 2055 3 Gut 0.17 protein_coding synonymous_variant LOW 2055C>T Tyr685Tyr
M0147941 LMMPHPJE_00001 2127 3 Gut 0.17 protein_coding synonymous_variant LOW 2127A>G Lys709Lys
M0147942 LMMPHPJE_00001 2173 3 Gut 0.17 protein_coding synonymous_variant LOW 2173T>C Leu725Leu
M0147943 LMMPHPJE_00001 2175 3 Gut 0.17 protein_coding missense_variant MODERATE 2175A>T Leu725Phe
M0147944 LMMPHPJE_00001 2400 3 Gut 0.17 protein_coding synonymous_variant LOW 2400T>C Asn800Asn
M0147945 LMMPHPJE_00001 2439 3 Gut 0.17 protein_coding synonymous_variant LOW 2439C>A Thr813Thr
M0147946 LMMPHPJE_00001 2731 3 Gut 0.17 protein_coding missense_variant MODERATE 2731A>G Arg911Gly
M0147947 LMMPHPJE_00001 2764 3 Gut 0.17 protein_coding synonymous_variant LOW 2764C>T Leu922Leu
M0147948 LMMPHPJE_00001 2921 3 Gut 0.17 protein_coding missense_variant MODERATE 2921A>G Asn974Ser
M0147949 LMMPHPJE_00001 3002 3 Gut 0.17 protein_coding missense_variant MODERATE 3002A>C Asp1001Ala
M0147950 LMMPHPJE_00537 523531 3 Gut 0.17 protein_coding synonymous_variant LOW 369C>T Asp123Asp
M0147951 LMMPHPJE_00537 523535 3 Gut 0.17 protein_coding missense_variant MODERATE 373G>A Ala125Thr
M0147952 LMMPHPJE_00537 523540 3 Gut 0.17 protein_coding synonymous_variant LOW 378T>C Thr126Thr
M0147953 LMMPHPJE_00537 523560 3 Gut 0.17 protein_coding missense_variant MODERATE 398T>C Ile133Thr
M0147954 LMMPHPJE_00537 523609 3 Gut 0.17 protein_coding synonymous_variant LOW 447T>C Phe149Phe
M0147955 LMMPHPJE_00537 523612 3 Gut 0.17 protein_coding synonymous_variant LOW 450T>C Asn150Asn
M0147956 LMMPHPJE_00537 523628 3 Gut 0.17 protein_coding missense_variant MODERATE 466G>A Val156Ile
M0147957 LMMPHPJE_00537 523747 3 Gut 0.17 protein_coding synonymous_variant LOW 585T>C Pro195Pro
M0147958 LMMPHPJE_00537 523847 3 Gut 0.17 protein_coding missense_variant MODERATE 685G>A Asp229Asn
M0147959 LMMPHPJE_00537 523852 3 Gut 0.17 protein_coding synonymous_variant LOW 690G>A Lys230Lys
M0147960 LMMPHPJE_00537 523870 3 Gut 0.17 protein_coding missense_variant MODERATE 708T>G Asp236Glu
M0147961 LMMPHPJE_00537 523955 3 Gut 0.17 protein_coding missense_variant MODERATE 793C>A Leu265Ile
M0147962 LMMPHPJE_00537 523956 3 Gut 0.17 protein_coding missense_variant MODERATE 794T>C Leu265Pro
M0147963 LMMPHPJE_00537 523968 3 Gut 0.17 protein_coding missense_variant MODERATE 806A>G Glu269Gly
M0147964 LMMPHPJE_00537 523976 3 Gut 0.17 protein_coding missense_variant MODERATE 814T>G Leu272Val
M0147965 LMMPHPJE_00537 523981 3 Gut 0.17 protein_coding synonymous_variant LOW 819T>A Ala273Ala
M0147966 LMMPHPJE_00537 523997 3 Gut 0.17 protein_coding missense_variant MODERATE 835G>A Gly279Ser
M0147967 LMMPHPJE_00537 523998 3 Gut 0.17 protein_coding missense_variant MODERATE 836G>A Gly279Asp
M0147968 LMMPHPJE_00537 524000 3 Gut 0.17 protein_coding missense_variant MODERATE 838A>G Lys280Glu
M0147969 LMMPHPJE_00537 524001 3 Gut 0.17 protein_coding missense_variant MODERATE 839A>G Lys280Arg
M0147970 LMMPHPJE_00537 524003 3 Gut 0.17 protein_coding missense_variant MODERATE 841A>G Asn281Asp
M0147971 LMMPHPJE_00537 524014 3 Gut 0.17 protein_coding synonymous_variant LOW 852T>C Tyr284Tyr
M0147972 LMMPHPJE_00537 524020 3 Gut 0.17 protein_coding synonymous_variant LOW 858C>T Asp286Asp
M0147973 LMMPHPJE_00537 524029 3 Gut 0.17 protein_coding missense_variant MODERATE 867A>T Glu289Asp
M0147974 LMMPHPJE_00538 524048 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -14G>A None
M0147975 LMMPHPJE_00538 524148 3 Gut 0.17 protein_coding synonymous_variant LOW 87A>G Gly29Gly
M0147976 LMMPHPJE_00538 524196 3 Gut 0.17 protein_coding synonymous_variant LOW 135G>A Lys45Lys
M0147977 LMMPHPJE_00538 524268 3 Gut 0.17 protein_coding synonymous_variant LOW 207T>C Thr69Thr
M0147978 LMMPHPJE_00538 524331 3 Gut 0.17 protein_coding synonymous_variant LOW 270T>C Gly90Gly
M0147979 LMMPHPJE_00538 524352 3 Gut 0.17 protein_coding synonymous_variant LOW 291A>G Glu97Glu
M0147980 LMMPHPJE_00538 524358 3 Gut 0.17 protein_coding synonymous_variant LOW 297T>A Ser99Ser
M0147981 LMMPHPJE_00538 524424 3 Gut 0.17 protein_coding synonymous_variant LOW 363A>C Ile121Ile
M0147982 LMMPHPJE_00538 524442 3 Gut 0.17 protein_coding synonymous_variant LOW 381C>T Asn127Asn
M0147983 LMMPHPJE_00538 524443 3 Gut 0.17 protein_coding synonymous_variant LOW 382T>C Leu128Leu
M0147984 LMMPHPJE_00538 524496 3 Gut 0.17 protein_coding synonymous_variant LOW 435T>C Gly145Gly
M0147985 LMMPHPJE_00538 524797 3 Gut 0.17 protein_coding synonymous_variant LOW 736C>T Leu246Leu
M0147986 LMMPHPJE_00538 524973 3 Gut 0.17 protein_coding synonymous_variant LOW 912A>G Lys304Lys
M0147987 LMMPHPJE_00538 524994 3 Gut 0.17 protein_coding synonymous_variant LOW 933G>A Lys311Lys
M0147988 LMMPHPJE_00538 525006 3 Gut 0.17 protein_coding synonymous_variant LOW 945C>T Asp315Asp
M0147989 LMMPHPJE_00538 525057 3 Gut 0.17 protein_coding synonymous_variant LOW 996T>C Ser332Ser
M0147990 LMMPHPJE_00538 525120 3 Gut 0.17 protein_coding synonymous_variant LOW 1059G>A Glu353Glu
M0147991 LMMPHPJE_00538 525165 3 Gut 0.17 protein_coding synonymous_variant LOW 1104G>A Ser368Ser
M0147992 LMMPHPJE_00538 525177 3 Gut 0.17 protein_coding synonymous_variant LOW 1116G>A Gln372Gln
M0147993 LMMPHPJE_00538 525207 3 Gut 0.17 protein_coding synonymous_variant LOW 1146A>T Thr382Thr
M0147994 LMMPHPJE_00538 525210 3 Gut 0.17 protein_coding synonymous_variant LOW 1149G>A Arg383Arg
M0147995 LMMPHPJE_00538 525216 3 Gut 0.17 protein_coding synonymous_variant LOW 1155G>A Thr385Thr
M0147996 LMMPHPJE_00538 525252 3 Gut 0.17 protein_coding synonymous_variant LOW 1191T>C Pro397Pro
M0147997 LMMPHPJE_00538 525276 3 Gut 0.17 protein_coding synonymous_variant LOW 1215A>G Glu405Glu
M0147998 LMMPHPJE_00538 525378 3 Gut 0.17 protein_coding synonymous_variant LOW 1317C>A Thr439Thr
M0147999 LMMPHPJE_00538 525387 3 Gut 0.17 protein_coding synonymous_variant LOW 1326C>A Ile442Ile
M0148000 LMMPHPJE_00538 525495 3 Gut 0.17 protein_coding synonymous_variant LOW 1434T>C Asp478Asp
M0148001 LMMPHPJE_00538 525543 3 Gut 0.17 protein_coding synonymous_variant LOW 1482G>A Glu494Glu
M0148002 LMMPHPJE_00538 525591 3 Gut 0.17 protein_coding synonymous_variant LOW 1530A>T Ile510Ile
M0148003 LMMPHPJE_00538 525667 3 Gut 0.17 protein_coding synonymous_variant LOW 1606C>T Leu536Leu
M0148004 LMMPHPJE_00538 525825 3 Gut 0.17 protein_coding synonymous_variant LOW 1764C>T Gly588Gly
M0148005 LMMPHPJE_00538 525837 3 Gut 0.17 protein_coding synonymous_variant LOW 1776T>C Asn592Asn
M0148006 LMMPHPJE_00538 525900 3 Gut 0.17 protein_coding missense_variant MODERATE 1839T>G Asn613Lys
M0148007 LMMPHPJE_00538 525902 3 Gut 0.17 protein_coding missense_variant MODERATE 1841T>C Ile614Thr
M0148008 LMMPHPJE_00538 525903 3 Gut 0.17 protein_coding synonymous_variant LOW 1842C>A Ile614Ile
M0148009 LMMPHPJE_00540 527675 3 Gut 0.17 protein_coding synonymous_variant LOW 111A>G Lys37Lys
M0148010 LMMPHPJE_00540 527750 3 Gut 0.17 protein_coding synonymous_variant LOW 186A>T Thr62Thr
M0148011 LMMPHPJE_00540 527795 3 Gut 0.17 protein_coding synonymous_variant LOW 231T>C Ser77Ser
M0148012 LMMPHPJE_00540 527870 3 Gut 0.17 protein_coding synonymous_variant LOW 306A>G Ser102Ser
M0148013 LMMPHPJE_00541 528009 3 Gut 0.17 protein_coding synonymous_variant LOW 78G>A Lys26Lys
M0148014 LMMPHPJE_00541 528051 3 Gut 0.17 protein_coding synonymous_variant LOW 120C>T Asn40Asn
M0148015 LMMPHPJE_00541 528106 3 Gut 0.17 protein_coding synonymous_variant LOW 175T>C Leu59Leu
M0148016 LMMPHPJE_00541 528172 3 Gut 0.17 protein_coding missense_variant MODERATE 241G>A Val81Ile
M0148017 LMMPHPJE_00541 528195 3 Gut 0.17 protein_coding synonymous_variant LOW 264A>G Glu88Glu
M0148018 LMMPHPJE_00541 528198 3 Gut 0.17 protein_coding synonymous_variant LOW 267C>A Val89Val
M0148019 LMMPHPJE_00541 528306 3 Gut 0.17 protein_coding synonymous_variant LOW 375G>T Ala125Ala
M0148020 LMMPHPJE_00541 528323 3 Gut 0.17 protein_coding missense_variant MODERATE 392C>A Ala131Asp
M0148021 LMMPHPJE_00541 528338 3 Gut 0.17 protein_coding missense_variant MODERATE 407C>T Ala136Val
M0148022 LMMPHPJE_00541 528431 3 Gut 0.17 protein_coding missense_variant MODERATE 500T>A Ile167Asn
M0148023 LMMPHPJE_00541 528480 3 Gut 0.17 protein_coding synonymous_variant LOW 549G>A Glu183Glu
M0148024 LMMPHPJE_00541 528495 3 Gut 0.17 protein_coding synonymous_variant LOW 564C>T Phe188Phe
M0148025 LMMPHPJE_00541 528521 3 Gut 0.17 protein_coding missense_variant MODERATE 590G>A Gly197Glu
M0148026 LMMPHPJE_00541 528625 3 Gut 0.17 protein_coding missense_variant MODERATE 694G>A Asp232Asn
M0148027 LMMPHPJE_00541 528741 3 Gut 0.17 protein_coding synonymous_variant LOW 810G>A Ser270Ser
M0148028 LMMPHPJE_00541 528816 3 Gut 0.17 protein_coding synonymous_variant LOW 885C>T Asn295Asn
M0148029 LMMPHPJE_00541 528888 3 Gut 0.17 protein_coding synonymous_variant LOW 957C>T Pro319Pro
M0148030 LMMPHPJE_00541 528931 3 Gut 0.17 protein_coding missense_variant MODERATE 1000G>A Gly334Arg
M0148031 LMMPHPJE_00541 528942 3 Gut 0.17 protein_coding synonymous_variant LOW 1011G>A Val337Val
M0148032 LMMPHPJE_00541 528949 3 Gut 0.17 protein_coding missense_variant MODERATE 1018A>G Asn340Asp
M0148033 LMMPHPJE_00541 528981 3 Gut 0.17 protein_coding synonymous_variant LOW 1050A>T Pro350Pro
M0148034 LMMPHPJE_00541 529158 3 Gut 0.17 protein_coding synonymous_variant LOW 1227G>A Glu409Glu
M0148035 LMMPHPJE_00541 529200 3 Gut 0.17 protein_coding synonymous_variant LOW 1269A>G Leu423Leu
M0148036 LMMPHPJE_00541 529294 3 Gut 0.17 protein_coding missense_variant MODERATE 1363A>G Lys455Glu
M0148037 LMMPHPJE_00541 529405 3 Gut 0.17 protein_coding synonymous_variant LOW 1474C>T Leu492Leu
M0148038 LMMPHPJE_00541 529407 3 Gut 0.17 protein_coding synonymous_variant LOW 1476G>A Leu492Leu
M0148039 LMMPHPJE_00541 529423 3 Gut 0.17 protein_coding missense_variant MODERATE 1492A>G Lys498Glu
M0148040 LMMPHPJE_00541 529432 3 Gut 0.17 protein_coding missense_variant MODERATE 1501G>A Ala501Thr
M0148041 LMMPHPJE_00541 529467 3 Gut 0.17 protein_coding missense_variant MODERATE 1536G>A Met512Ile
M0148042 LMMPHPJE_00541 529591 3 Gut 0.17 protein_coding missense_variant MODERATE 1660A>G Ile554Val
M0148043 LMMPHPJE_00541 529617 3 Gut 0.17 protein_coding synonymous_variant LOW 1686T>C Ala562Ala
M0148044 LMMPHPJE_00541 529719 3 Gut 0.17 protein_coding synonymous_variant LOW 1788G>A Leu596Leu
M0148045 LMMPHPJE_00541 529897 3 Gut 0.17 protein_coding missense_variant MODERATE 1966G>T Val656Phe
M0148046 LMMPHPJE_00541 530023 3 Gut 0.17 protein_coding missense_variant MODERATE 2092G>A Glu698Lys
M0148047 LMMPHPJE_00541 530163 3 Gut 0.17 protein_coding synonymous_variant LOW 2232G>A Leu744Leu
M0148048 LMMPHPJE_00539 530268 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2976T>C None
M0148049 LMMPHPJE_00474 466320 3 Gut 0.17 protein_coding synonymous_variant LOW 147T>C Tyr49Tyr
M0148050 LMMPHPJE_00474 466521 3 Gut 0.17 protein_coding synonymous_variant LOW 348T>C Ile116Ile
M0148051 LMMPHPJE_00474 466623 3 Gut 0.17 protein_coding synonymous_variant LOW 450T>G Gly150Gly
M0148052 LMMPHPJE_00474 466804 3 Gut 0.17 protein_coding missense_variant MODERATE 631A>G Ile211Val
M0148053 LMMPHPJE_00475 467328 3 Gut 0.17 protein_coding synonymous_variant LOW 480T>C Cys160Cys
M0148054 LMMPHPJE_00476 467801 3 Gut 0.17 protein_coding missense_variant MODERATE 55T>G Phe19Val
M0148055 LMMPHPJE_00477 468339 3 Gut 0.17 protein_coding synonymous_variant LOW 252A>G Ala84Ala
M0148056 LMMPHPJE_00477 468498 3 Gut 0.17 protein_coding synonymous_variant LOW 411A>G Leu137Leu
M0148057 LMMPHPJE_00477 468571 3 Gut 0.17 protein_coding missense_variant MODERATE 484A>G Asn162Asp
M0148058 LMMPHPJE_00478 468582 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -114G>A None
M0148059 LMMPHPJE_00478 468585 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -111G>A None
M0148060 LMMPHPJE_00478 468593 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -103C>T None
M0148061 LMMPHPJE_00478 468605 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -91A>G None
M0148062 LMMPHPJE_00478 468627 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -69A>C None
M0148063 LMMPHPJE_00478 468636 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -60T>C None
M0148064 LMMPHPJE_00478 468769 3 Gut 0.17 protein_coding missense_variant MODERATE 74C>A Ala25Asp
M0148065 LMMPHPJE_00478 468815 3 Gut 0.17 protein_coding synonymous_variant LOW 120C>T Val40Val
M0148066 LMMPHPJE_00478 468818 3 Gut 0.17 protein_coding missense_variant MODERATE 123A>T Leu41Phe
M0148067 LMMPHPJE_00478 468866 3 Gut 0.17 protein_coding synonymous_variant LOW 171T>C Ile57Ile
M0148068 LMMPHPJE_00478 468881 3 Gut 0.17 protein_coding synonymous_variant LOW 186C>G Gly62Gly
M0148069 LMMPHPJE_00478 468930 3 Gut 0.17 protein_coding missense_variant MODERATE 235G>A Asp79Asn
M0148070 LMMPHPJE_00478 468962 3 Gut 0.17 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0148071 LMMPHPJE_00478 468963 3 Gut 0.17 protein_coding missense_variant MODERATE 268A>C Asn90His
M0148072 LMMPHPJE_00478 469080 3 Gut 0.17 protein_coding missense_variant MODERATE 385G>A Glu129Lys
M0148073 LMMPHPJE_00478 469082 3 Gut 0.17 protein_coding missense_variant MODERATE 387G>T Glu129Asp
M0148074 LMMPHPJE_00478 469094 3 Gut 0.17 protein_coding synonymous_variant LOW 399C>T Val133Val
M0148075 LMMPHPJE_00478 469104 3 Gut 0.17 protein_coding missense_variant MODERATE 409T>G Ser137Ala
M0148076 LMMPHPJE_00478 469121 3 Gut 0.17 protein_coding synonymous_variant LOW 426C>A Ala142Ala
M0148077 LMMPHPJE_00478 469124 3 Gut 0.17 protein_coding synonymous_variant LOW 429G>T Ser143Ser
M0148078 LMMPHPJE_00478 469127 3 Gut 0.17 protein_coding synonymous_variant LOW 432C>T Phe144Phe
M0148079 LMMPHPJE_00478 469142 3 Gut 0.17 protein_coding synonymous_variant LOW 447C>T Ile149Ile
M0148080 LMMPHPJE_00478 469178 3 Gut 0.17 protein_coding synonymous_variant LOW 483G>A Glu161Glu
M0148081 LMMPHPJE_00478 469181 3 Gut 0.17 protein_coding synonymous_variant LOW 486G>A Lys162Lys
M0148082 LMMPHPJE_00478 469188 3 Gut 0.17 protein_coding missense_variant MODERATE 493A>G Ile165Val
M0148083 LMMPHPJE_00478 469205 3 Gut 0.17 protein_coding synonymous_variant LOW 510G>T Ala170Ala
M0148084 LMMPHPJE_00478 469248 3 Gut 0.17 protein_coding missense_variant MODERATE 553A>G Ile185Val
M0148085 LMMPHPJE_00478 469259 3 Gut 0.17 protein_coding synonymous_variant LOW 564T>G Ala188Ala
M0148086 LMMPHPJE_00478 469301 3 Gut 0.17 protein_coding synonymous_variant LOW 606C>T Gly202Gly
M0148087 LMMPHPJE_00478 469311 3 Gut 0.17 protein_coding missense_variant MODERATE 616A>G Asn206Asp
M0148088 LMMPHPJE_00478 469313 3 Gut 0.17 protein_coding synonymous_variant LOW 618C>T Asn206Asn
M0148089 LMMPHPJE_00478 469325 3 Gut 0.17 protein_coding synonymous_variant LOW 630T>C Asn210Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
LMMPHPJE_00043 ARO:3002630 100 1.83e-188 1 260 1.0000 1.0000 aminoglycoside antibiotic ANT(9) antibiotic inactivation
LMMPHPJE_00197 ARO:3002837 98.2 6.82e-123 1 164 1.0000 1.0000 lincosamide antibiotic lincosamide nucleotidyltransferase (LNU) antibiotic inactivation
LMMPHPJE_00445 ARO:3002837 98.2 6.82e-123 1 164 1.0000 1.0000 lincosamide antibiotic lincosamide nucleotidyltransferase (LNU) antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LMMPHPJE_00225 2.A.21.3.20 74.5 9.2e-209 1 498 0.9940 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
LMMPHPJE_00473 2.A.21.3.20 74.5 9.2e-209 1 498 0.9940 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family