Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C222
  Reference Plasmid   CP147414.1
  Reference Plasmid Size   133180
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0060012 JKFKNLKH_00033 35346 6 Skin 0.46 protein_coding missense_variant MODERATE 476A>C His159Pro
M0060013 JKFKNLKH_00033 35425 6 Skin 0.46 protein_coding synonymous_variant LOW 555G>T Val185Val
M0060014 JKFKNLKH_00033 35442 6 Skin 0.46 protein_coding missense_variant MODERATE 572C>G Ala191Gly
M0060015 JKFKNLKH_00033 35474 6 Skin 0.46 protein_coding missense_variant MODERATE 604T>G Trp202Gly
M0060016 JKFKNLKH_00033 35512 6 Skin 0.46 protein_coding synonymous_variant LOW 642A>G Glu214Glu
M0060017 JKFKNLKH_00033 35521 6 Skin 0.46 protein_coding synonymous_variant LOW 651G>T Leu217Leu
M0060018 JKFKNLKH_00033 35537 6 Skin 0.46 protein_coding missense_variant MODERATE 667A>C Lys223Gln
M0060019 JKFKNLKH_00033 35541 6 Skin 0.46 protein_coding missense_variant MODERATE 671A>C Glu224Ala
M0060020 JKFKNLKH_00033 35542 6 Skin 0.46 protein_coding synonymous_variant LOW 672A>G Glu224Glu
M0060021 JKFKNLKH_00033 35560 6 Skin 0.46 protein_coding missense_variant MODERATE 690C>G Asp230Glu
M0060022 JKFKNLKH_00033 35563 6 Skin 0.46 protein_coding synonymous_variant LOW 693C>G Val231Val
M0060023 JKFKNLKH_00033 35617 6 Skin 0.46 protein_coding synonymous_variant LOW 747C>G Ala249Ala
M0060024 JKFKNLKH_00033 35640 6 Skin 0.46 protein_coding missense_variant MODERATE 770A>G Glu257Gly
M0060025 JKFKNLKH_00033 35641 6 Skin 0.46 protein_coding synonymous_variant LOW 771G>A Glu257Glu
M0060026 JKFKNLKH_00033 35644 6 Skin 0.46 protein_coding synonymous_variant LOW 774T>C Leu258Leu
M0060027 JKFKNLKH_00033 35732 3 Skin 0.23 protein_coding missense_variant MODERATE 862C>T Arg288Trp
M0060028 JKFKNLKH_00033 35743 6 Skin 0.46 protein_coding synonymous_variant LOW 873G>A Arg291Arg
M0060029 JKFKNLKH_00033 35747 6 Skin 0.46 protein_coding missense_variant MODERATE 877A>G Thr293Ala
M0060030 JKFKNLKH_00033 35848 6 Skin 0.46 protein_coding synonymous_variant LOW 978A>G Gly326Gly
M0060031 JKFKNLKH_00033 35917 7 Skin 0.54 protein_coding synonymous_variant LOW 1047T>C His349His
M0060032 JKFKNLKH_00033 35962 7 Skin 0.54 protein_coding synonymous_variant LOW 1092A>G Glu364Glu
M0060033 JKFKNLKH_00033 36016 7 Skin 0.54 protein_coding synonymous_variant LOW 1146G>A Pro382Pro
M0060034 JKFKNLKH_00033 36034 7 Skin 0.54 protein_coding synonymous_variant LOW 1164A>G Ser388Ser
M0060035 JKFKNLKH_00029 36091 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4970T>A None
M0060036 JKFKNLKH_00029 36115 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4994C>G None
M0060037 JKFKNLKH_00030 36128 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3300G>A None
M0060038 JKFKNLKH_00030 36129 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3301A>G None
M0060039 JKFKNLKH_00030 36153 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3325T>C None
M0060040 JKFKNLKH_00030 36156 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3328G>C None
M0060041 JKFKNLKH_00030 36166 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3338C>G None
M0060042 JKFKNLKH_00030 36186 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3358A>C None
M0060043 JKFKNLKH_00030 36189 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -3361G>A None
M0060044 JKFKNLKH_00030 36191 4 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3363G>A None
M0060045 JKFKNLKH_00034 36254 7 Skin 0.54 protein_coding synonymous_variant LOW 700A>C Arg234Arg
M0060046 JKFKNLKH_00034 36273 7 Skin 0.54 protein_coding synonymous_variant LOW 681G>C Arg227Arg
M0060047 JKFKNLKH_00034 36324 7 Skin 0.54 protein_coding synonymous_variant LOW 630T>C Ala210Ala
M0060048 JKFKNLKH_00034 36396 7 Skin 0.54 protein_coding synonymous_variant LOW 558C>T Arg186Arg
M0060049 JKFKNLKH_00034 36435 7 Skin 0.54 protein_coding synonymous_variant LOW 519G>A Glu173Glu
M0060050 JKFKNLKH_00034 36501 7 Skin 0.54 protein_coding synonymous_variant LOW 453T>C Ile151Ile
M0060051 JKFKNLKH_00034 36549 7 Skin 0.54 protein_coding synonymous_variant LOW 405G>C Pro135Pro
M0060052 JKFKNLKH_00034 36594 7 Skin 0.54 protein_coding synonymous_variant LOW 360G>A Glu120Glu
M0060053 JKFKNLKH_00034 36614 7 Skin 0.54 protein_coding missense_variant MODERATE 340G>C Gly114Arg
M0060054 JKFKNLKH_00034 36647 7 Skin 0.54 protein_coding missense_variant MODERATE 307T>G Ser103Ala
M0060055 JKFKNLKH_00034 36687 7 Skin 0.54 protein_coding synonymous_variant LOW 267T>C Asp89Asp
M0060056 JKFKNLKH_00034 36726 7 Skin 0.54 protein_coding synonymous_variant LOW 228C>G Ser76Ser
M0060057 JKFKNLKH_00034 36770 7 Skin 0.54 protein_coding missense_variant MODERATE 184G>T Ala62Ser
M0060058 JKFKNLKH_00034 36831 3 Skin 0.23 protein_coding synonymous_variant LOW 123C>T Gly41Gly
M0060059 JKFKNLKH_00030 36971 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4143G>C None
M0060060 JKFKNLKH_00030 36990 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4162T>A None
M0060061 JKFKNLKH_00030 37111 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4283A>G None
M0060062 JKFKNLKH_00030 37162 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4334G>C None
M0060063 JKFKNLKH_00030 37165 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4337T>C None
M0060064 JKFKNLKH_00030 37217 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4389T>C None
M0060065 JKFKNLKH_00030 37262 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4434T>C None
M0060066 JKFKNLKH_00030 37279 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4451C>T None
M0060067 JKFKNLKH_00030 37293 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4465A>G None
M0060068 JKFKNLKH_00030 37302 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4474A>G None
M0060069 JKFKNLKH_00030 37303 7 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -4475C>T None
M0060070 JKFKNLKH_00035 37335 4 Skin 0.31 protein_coding synonymous_variant LOW 354G>A Lys118Lys
M0060071 JKFKNLKH_00035 37366 7 Skin 0.54 protein_coding missense_variant MODERATE 323C>A Thr108Lys
M0060072 JKFKNLKH_00035 37392 7 Skin 0.54 protein_coding synonymous_variant LOW 297G>T Gly99Gly
M0060073 JKFKNLKH_00035 37473 7 Skin 0.54 protein_coding synonymous_variant LOW 216C>T Leu72Leu
M0060074 JKFKNLKH_00035 37474 7 Skin 0.54 protein_coding missense_variant MODERATE 215T>G Leu72Arg
M0060075 JKFKNLKH_00035 37485 7 Skin 0.54 protein_coding synonymous_variant LOW 204A>G Gly68Gly
M0060076 JKFKNLKH_00035 37533 7 Skin 0.54 protein_coding synonymous_variant LOW 156A>C Thr52Thr
M0060077 JKFKNLKH_00035 37653 6 Skin 0.46 protein_coding missense_variant MODERATE 36G>C Leu12Phe
M0060078 JKFKNLKH_00035 37655 6 Skin 0.46 protein_coding synonymous_variant LOW 34T>C Leu12Leu
M0060079 JKFKNLKH_00035 37662 6 Skin 0.46 protein_coding synonymous_variant LOW 27G>C Thr9Thr
M0060080 JKFKNLKH_00030 37729 6 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -4901G>A None
M0060081 JKFKNLKH_00030 37745 6 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -4917C>G None
M0060082 JKFKNLKH_00030 37759 6 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -4931T>C None
M0060083 JKFKNLKH_00030 37827 6 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -4999C>T None
M0060084 JKFKNLKH_00030 37828 6 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -5000T>C None
M0060085 JKFKNLKH_00110 119278 5 Skin 0.38 protein_coding synonymous_variant LOW 138G>A Ala46Ala
M0060086 JKFKNLKH_00110 119304 5 Skin 0.38 protein_coding missense_variant MODERATE 164C>T Pro55Leu
M0060087 JKFKNLKH_00110 119401 6 Skin 0.46 protein_coding synonymous_variant LOW 261T>C Tyr87Tyr
M0060088 JKFKNLKH_00110 119788 6 Skin 0.46 protein_coding synonymous_variant LOW 648C>G Ala216Ala
M0060089 JKFKNLKH_00110 119791 6 Skin 0.46 protein_coding synonymous_variant LOW 651C>T Asp217Asp
M0060090 JKFKNLKH_00110 119870 6 Skin 0.46 protein_coding missense_variant MODERATE 730G>A Ala244Thr
M0060091 JKFKNLKH_00110 119884 6 Skin 0.46 protein_coding synonymous_variant LOW 744A>G Ala248Ala
M0060092 JKFKNLKH_00110 119944 6 Skin 0.46 protein_coding synonymous_variant LOW 804C>G Gly268Gly
M0060093 JKFKNLKH_00110 120301 5 Skin 0.38 protein_coding synonymous_variant LOW 1161G>C Arg387Arg
M0060094 JKFKNLKH_00110 120304 5 Skin 0.38 protein_coding synonymous_variant LOW 1164T>C Asp388Asp
M0060095 JKFKNLKH_00110 120478 5 Skin 0.38 protein_coding synonymous_variant LOW 1338G>C Ala446Ala
M0060096 JKFKNLKH_00110 120547 5 Skin 0.38 protein_coding synonymous_variant LOW 1407T>A Leu469Leu
M0060097 JKFKNLKH_00110 120565 5 Skin 0.38 protein_coding synonymous_variant LOW 1425G>C Leu475Leu
M0060098 JKFKNLKH_00110 120589 5 Skin 0.38 protein_coding synonymous_variant LOW 1449T>C Leu483Leu
M0060099 JKFKNLKH_00110 120591 5 Skin 0.38 protein_coding missense_variant MODERATE 1451G>A Arg484Lys
M0060100 JKFKNLKH_00110 120595 5 Skin 0.38 protein_coding synonymous_variant LOW 1455T>G Ala485Ala
M0060101 JKFKNLKH_00110 120639 5 Skin 0.38 protein_coding stop_lost&splice_region_variant HIGH 1499G>C Ter500Serext*?
M0060102 JKFKNLKH_00111 120711 5 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -25A>C None
M0060103 JKFKNLKH_00111 120712 5 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -24A>G None
M0060104 JKFKNLKH_00111 120792 5 Skin 0.38 protein_coding synonymous_variant LOW 57T>C Leu19Leu
M0060105 JKFKNLKH_00111 120867 5 Skin 0.38 protein_coding synonymous_variant LOW 132C>T Gly44Gly
M0060106 JKFKNLKH_00111 120894 5 Skin 0.38 protein_coding synonymous_variant LOW 159C>G Ala53Ala
M0060107 JKFKNLKH_00111 120982 5 Skin 0.38 protein_coding missense_variant MODERATE 247G>A Asp83Asn
M0060108 JKFKNLKH_00111 121059 5 Skin 0.38 protein_coding synonymous_variant LOW 324A>G Glu108Glu
M0060109 JKFKNLKH_00111 121083 5 Skin 0.38 protein_coding synonymous_variant LOW 348G>T Leu116Leu
M0060110 JKFKNLKH_00111 121278 5 Skin 0.38 protein_coding synonymous_variant LOW 543C>T Val181Val
M0060111 JKFKNLKH_00111 121281 5 Skin 0.38 protein_coding synonymous_variant LOW 546A>G Ala182Ala
M0060112 JKFKNLKH_00111 121299 5 Skin 0.38 protein_coding synonymous_variant LOW 564A>G Glu188Glu
M0060113 JKFKNLKH_00111 121302 5 Skin 0.38 protein_coding synonymous_variant LOW 567C>A Pro189Pro
M0060114 JKFKNLKH_00111 121431 5 Skin 0.38 protein_coding synonymous_variant LOW 696G>C Thr232Thr
M0060115 JKFKNLKH_00111 121437 5 Skin 0.38 protein_coding synonymous_variant LOW 702C>T Pro234Pro
M0060116 JKFKNLKH_00111 121452 5 Skin 0.38 protein_coding synonymous_variant LOW 717C>T Asp239Asp
M0060117 JKFKNLKH_00111 121497 5 Skin 0.38 protein_coding synonymous_variant LOW 762C>T Leu254Leu
M0060118 JKFKNLKH_00111 121614 5 Skin 0.38 protein_coding synonymous_variant LOW 879G>C Thr293Thr
M0060119 JKFKNLKH_00111 121683 5 Skin 0.38 protein_coding synonymous_variant LOW 948C>T Ala316Ala
M0060120 JKFKNLKH_00033 35611 4 Skin 0.31 protein_coding missense_variant MODERATE 741G>A Met247Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
JKFKNLKH_00070 ARO:3002660 99.6 1.07e-205 1 278 1.0000 1.0000 aminoglycoside antibiotic APH(6) antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JKFKNLKH_00078 ACM04238.1|GH141 90.7 0 1 654 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
JKFKNLKH_00011 3.D.4.2.2 79 2.7e-309 1 644 1.0000 1.0000 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.4 The Proton-translocating Cytochrome Oxidase (COX) Superfamily
JKFKNLKH_00054 2.A.98.1.1 82.2 2.8e-140 2 338 0.9941 0.9970 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.98 The Putative Sulfate Exporter (PSE) Family
JKFKNLKH_00058 2.A.56.1.4 98.9 4.6e-236 1 446 1.0000 1.2707 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.56 The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family
JKFKNLKH_00060 2.A.56.1.4 97.9 4.9e-182 1 333 1.0000 0.9487 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.56 The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family
JKFKNLKH_00105 3.A.1.3.26 71.2 5.9e-101 34 273 0.8791 0.9524 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily