Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2797
  Reference Plasmid   DP1806001274_bin.2__NODE_51_length_10572_cov_10.790222
  Reference Plasmid Size   10572
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0060121 CFLCIGPH_00003 2732 22 Skin 0.07 protein_coding missense_variant MODERATE 34G>T Ala12Ser
M0060122 CFLCIGPH_00005 3744 22 Skin 0.07 protein_coding synonymous_variant LOW 291C>T Val97Val
M0060123 CFLCIGPH_00005 4299 96 Skin 0.33 protein_coding synonymous_variant LOW 846T>C Arg282Arg
M0060124 CFLCIGPH_00005 4416 33 Skin 0.11 protein_coding synonymous_variant LOW 963G>C Pro321Pro
M0060125 CFLCIGPH_00006 5087 36 Skin 0.12 protein_coding synonymous_variant LOW 96G>C Pro32Pro
M0060126 CFLCIGPH_00005 3801 42 Skin 0.14 protein_coding synonymous_variant LOW 348T>C Ile116Ile
M0060127 CFLCIGPH_00005 3816 42 Skin 0.14 protein_coding synonymous_variant LOW 363C>T Val121Val
M0060128 CFLCIGPH_00005 3822 42 Skin 0.14 protein_coding synonymous_variant LOW 369G>A Ser123Ser
M0060129 CFLCIGPH_00005 3838 44 Skin 0.15 protein_coding missense_variant MODERATE 385G>A Val129Ile
M0060130 CFLCIGPH_00005 4143 20 Skin 0.07 protein_coding synonymous_variant LOW 690C>A Val230Val
M0060131 CFLCIGPH_00005 4203 21 Skin 0.07 protein_coding synonymous_variant LOW 750C>T Asn250Asn
M0060132 CFLCIGPH_00005 4239 21 Skin 0.07 protein_coding synonymous_variant LOW 786T>C Phe262Phe
M0060133 CFLCIGPH_00005 4308 28 Skin 0.10 protein_coding synonymous_variant LOW 855C>A Pro285Pro
M0060134 CFLCIGPH_00005 4332 28 Skin 0.10 protein_coding synonymous_variant LOW 879C>T Thr293Thr
M0060135 CFLCIGPH_00005 4342 28 Skin 0.10 protein_coding missense_variant MODERATE 889G>A Ala297Thr
M0060136 CFLCIGPH_00003 3025 13 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -260C>A None
M0060137 CFLCIGPH_00003 3056 13 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -291A>G None
M0060138 CFLCIGPH_00004 3171 14 Skin 0.05 protein_coding missense_variant MODERATE 13G>A Val5Ile
M0060139 CFLCIGPH_00004 3183 14 Skin 0.05 protein_coding missense_variant MODERATE 25G>A Ala9Thr
M0060140 CFLCIGPH_00004 3198 14 Skin 0.05 protein_coding missense_variant MODERATE 40G>A Val14Met
M0060141 CFLCIGPH_00004 3220 14 Skin 0.05 protein_coding missense_variant MODERATE 62A>G Asp21Gly
M0060142 CFLCIGPH_00004 3231 14 Skin 0.05 protein_coding missense_variant MODERATE 73T>C Tyr25His
M0060143 CFLCIGPH_00004 3237 14 Skin 0.05 protein_coding missense_variant MODERATE 79A>G Lys27Glu
M0060144 CFLCIGPH_00004 3242 14 Skin 0.05 protein_coding synonymous_variant LOW 84C>T Ser28Ser
M0060145 CFLCIGPH_00004 3248 14 Skin 0.05 protein_coding synonymous_variant LOW 90T>C Gly30Gly
M0060146 CFLCIGPH_00004 3264 18 Skin 0.06 protein_coding missense_variant MODERATE 106A>G Thr36Ala
M0060147 CFLCIGPH_00004 3294 14 Skin 0.05 protein_coding missense_variant MODERATE 136G>A Asp46Asn
M0060148 CFLCIGPH_00004 3296 15 Skin 0.05 protein_coding synonymous_variant LOW 138T>C Asp46Asp
M0060149 CFLCIGPH_00004 3314 15 Skin 0.05 protein_coding synonymous_variant LOW 156T>C Val52Val
M0060150 CFLCIGPH_00004 3323 14 Skin 0.05 protein_coding synonymous_variant LOW 165C>T Ile55Ile
M0060151 CFLCIGPH_00004 3327 14 Skin 0.05 protein_coding missense_variant MODERATE 169A>G Thr57Ala
M0060152 CFLCIGPH_00004 3384 15 Skin 0.05 protein_coding missense_variant MODERATE 226G>A Ala76Thr
M0060153 CFLCIGPH_00004 3394 15 Skin 0.05 protein_coding missense_variant MODERATE 236G>T Cys79Phe
M0060154 CFLCIGPH_00004 3440 16 Skin 0.05 protein_coding synonymous_variant LOW 282G>C Ser94Ser
M0060155 CFLCIGPH_00005 3465 16 Skin 0.05 protein_coding synonymous_variant LOW 12T>C Thr4Thr
M0060156 CFLCIGPH_00005 3528 13 Skin 0.04 protein_coding synonymous_variant LOW 75G>A Leu25Leu
M0060157 CFLCIGPH_00005 3693 15 Skin 0.05 protein_coding synonymous_variant LOW 240A>T Ala80Ala
M0060158 CFLCIGPH_00005 3726 16 Skin 0.05 protein_coding synonymous_variant LOW 273C>T Gly91Gly
M0060159 CFLCIGPH_00005 4273 13 Skin 0.04 protein_coding missense_variant MODERATE 820C>T Pro274Ser
M0060160 CFLCIGPH_00005 4562 8 Skin 0.03 protein_coding missense_variant MODERATE 1109G>C Trp370Ser
M0060161 CFLCIGPH_00005 4833 19 Skin 0.06 protein_coding synonymous_variant LOW 1380A>G Lys460Lys
M0060162 CFLCIGPH_00006 5003 40 Skin 0.14 protein_coding synonymous_variant LOW 12C>T Phe4Phe
M0060163 CFLCIGPH_00004 2365 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -794T>C None
M0060164 CFLCIGPH_00004 2503 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -656C>T None
M0060165 CFLCIGPH_00004 3389 8 Skin 0.03 protein_coding missense_variant MODERATE 231A>C Gln77His
M0060166 CFLCIGPH_00004 3401 8 Skin 0.03 protein_coding missense_variant MODERATE 243A>C Gln81His
M0060167 CFLCIGPH_00005 3564 10 Skin 0.03 protein_coding synonymous_variant LOW 111C>T Thr37Thr
M0060168 CFLCIGPH_00005 3566 4 Skin 0.01 protein_coding missense_variant MODERATE 113T>C Val38Ala
M0060169 CFLCIGPH_00010 8818 151 Skin 0.51 protein_coding missense_variant MODERATE 173T>C Leu58Pro
M0060170 CFLCIGPH_00006 5166 37 Skin 0.13 protein_coding missense_variant MODERATE 175C>A Leu59Ile
M0060171 CFLCIGPH_00006 5174 35 Skin 0.12 protein_coding missense_variant MODERATE 183G>A Met61Ile
M0060172 CFLCIGPH_00006 5202 38 Skin 0.13 protein_coding missense_variant MODERATE 211A>G Ser71Gly
M0060173 CFLCIGPH_00005 4020 11 Skin 0.04 protein_coding synonymous_variant LOW 567A>C Ala189Ala
M0060174 CFLCIGPH_00005 4656 10 Skin 0.03 protein_coding synonymous_variant LOW 1203C>A Gly401Gly
M0060175 CFLCIGPH_00005 4755 7 Skin 0.02 protein_coding synonymous_variant LOW 1302A>G Glu434Glu
M0060176 CFLCIGPH_00006 5270 44 Skin 0.15 protein_coding synonymous_variant LOW 279C>T Gly93Gly
M0060177 CFLCIGPH_00007 5625 35 Skin 0.12 protein_coding synonymous_variant LOW 198C>T Tyr66Tyr
M0060178 CFLCIGPH_00007 5658 37 Skin 0.13 protein_coding synonymous_variant LOW 231G>A Ser77Ser
M0060179 CFLCIGPH_00007 6377 31 Skin 0.11 protein_coding missense_variant MODERATE 950G>A Gly317Asp
M0060180 CFLCIGPH_00003 6482 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3717G>A None
M0060181 CFLCIGPH_00003 6498 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3733G>A None
M0060182 CFLCIGPH_00003 6513 23 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3748T>G None
M0060183 CFLCIGPH_00003 6531 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3766A>G None
M0060184 CFLCIGPH_00003 6539 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3774C>G None
M0060185 CFLCIGPH_00003 6540 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3775T>C None
M0060186 CFLCIGPH_00003 6561 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3796C>T None
M0060187 CFLCIGPH_00008 6567 3 Skin 0.01 protein_coding missense_variant MODERATE 617C>T Ala206Val
M0060188 CFLCIGPH_00008 6568 3 Skin 0.01 protein_coding missense_variant MODERATE 616G>A Ala206Thr
M0060189 CFLCIGPH_00008 6577 3 Skin 0.01 protein_coding missense_variant MODERATE 607C>A Leu203Ile
M0060190 CFLCIGPH_00008 6578 3 Skin 0.01 protein_coding synonymous_variant LOW 606C>T Asp202Asp
M0060191 CFLCIGPH_00008 6584 3 Skin 0.01 protein_coding missense_variant MODERATE 600G>T Leu200Phe
M0060192 CFLCIGPH_00008 6599 3 Skin 0.01 protein_coding synonymous_variant LOW 585C>T Ile195Ile
M0060193 CFLCIGPH_00008 6613 3 Skin 0.01 protein_coding missense_variant MODERATE 571A>G Asn191Asp
M0060194 CFLCIGPH_00008 6616 3 Skin 0.01 protein_coding missense_variant MODERATE 568C>A Gln190Lys
M0060195 CFLCIGPH_00008 6650 3 Skin 0.01 protein_coding synonymous_variant LOW 534C>T Ala178Ala
M0060196 CFLCIGPH_00008 6676 3 Skin 0.01 protein_coding missense_variant MODERATE 508C>A Leu170Met
M0060197 CFLCIGPH_00008 6693 29 Skin 0.10 protein_coding missense_variant MODERATE 491G>A Ser164Asn
M0060198 CFLCIGPH_00008 6730 29 Skin 0.10 protein_coding missense_variant MODERATE 454A>G Ile152Val
M0060199 CFLCIGPH_00008 6758 3 Skin 0.01 protein_coding synonymous_variant LOW 426C>T Asn142Asn
M0060200 CFLCIGPH_00008 6764 29 Skin 0.10 protein_coding synonymous_variant LOW 420G>A Val140Val
M0060201 CFLCIGPH_00008 6774 3 Skin 0.01 protein_coding missense_variant MODERATE 410C>T Thr137Met
M0060202 CFLCIGPH_00008 6783 29 Skin 0.10 protein_coding missense_variant MODERATE 401C>T Ala134Val
M0060203 CFLCIGPH_00008 6785 29 Skin 0.10 protein_coding synonymous_variant LOW 399T>G Ser133Ser
M0060204 CFLCIGPH_00008 6787 29 Skin 0.10 protein_coding missense_variant MODERATE 397T>A Ser133Thr
M0060205 CFLCIGPH_00008 6800 47 Skin 0.16 protein_coding missense_variant MODERATE 384A>C Lys128Asn
M0060206 CFLCIGPH_00008 6899 28 Skin 0.10 protein_coding missense_variant MODERATE 285C>A Asp95Glu
M0060207 CFLCIGPH_00008 6902 28 Skin 0.10 protein_coding synonymous_variant LOW 282T>C Ala94Ala
M0060208 CFLCIGPH_00008 6903 28 Skin 0.10 protein_coding missense_variant MODERATE 281C>T Ala94Val
M0060209 CFLCIGPH_00008 6907 28 Skin 0.10 protein_coding missense_variant MODERATE 277G>C Glu93Gln
M0060210 CFLCIGPH_00008 6963 3 Skin 0.01 protein_coding missense_variant MODERATE 221A>G Glu74Gly
M0060211 CFLCIGPH_00008 6993 28 Skin 0.10 protein_coding missense_variant MODERATE 191C>G Ala64Gly
M0060212 CFLCIGPH_00008 7025 28 Skin 0.10 protein_coding synonymous_variant LOW 159T>C Val53Val
M0060213 CFLCIGPH_00009 7535 63 Skin 0.21 protein_coding missense_variant MODERATE 202T>G Trp68Gly
M0060214 CFLCIGPH_00009 7567 97 Skin 0.33 protein_coding synonymous_variant LOW 234G>A Thr78Thr
M0060215 CFLCIGPH_00005 4120 3 Skin 0.01 protein_coding missense_variant MODERATE 667C>T Pro223Ser
M0060216 CFLCIGPH_00007 6241 55 Skin 0.19 protein_coding missense_variant MODERATE 814G>C Ala272Pro
M0060217 CFLCIGPH_00007 6367 13 Skin 0.04 protein_coding missense_variant MODERATE 940G>A Gly314Arg
M0060218 CFLCIGPH_00008 6671 11 Skin 0.04 protein_coding synonymous_variant LOW 513C>T Ala171Ala
M0060219 CFLCIGPH_00007 5715 12 Skin 0.04 protein_coding synonymous_variant LOW 288G>A Leu96Leu
M0060220 CFLCIGPH_00008 6589 57 Skin 0.19 protein_coding stop_gained HIGH 595A>T Lys199*
M0060221 CFLCIGPH_00009 7666 101 Skin 0.34 protein_coding synonymous_variant LOW 333A>G Ala111Ala
M0060222 CFLCIGPH_00009 8469 87 Skin 0.30 protein_coding missense_variant MODERATE 1136G>A Arg379Lys
M0060223 CFLCIGPH_00011 9435 7 Skin 0.02 protein_coding synonymous_variant LOW 24T>C Phe8Phe
M0060224 CFLCIGPH_00005 3681 3 Skin 0.01 protein_coding synonymous_variant LOW 228C>T Cys76Cys
M0060225 CFLCIGPH_00007 5565 35 Skin 0.12 protein_coding synonymous_variant LOW 138C>T Val46Val
M0060226 CFLCIGPH_00007 5874 33 Skin 0.11 protein_coding synonymous_variant LOW 447C>T Asp149Asp
M0060227 CFLCIGPH_00007 5881 33 Skin 0.11 protein_coding synonymous_variant LOW 454T>C Leu152Leu
M0060228 CFLCIGPH_00005 4131 4 Skin 0.01 protein_coding synonymous_variant LOW 678T>C Gly226Gly
M0060229 CFLCIGPH_00007 5478 33 Skin 0.11 protein_coding synonymous_variant LOW 51C>T Arg17Arg
M0060230 CFLCIGPH_00007 5494 33 Skin 0.11 protein_coding missense_variant MODERATE 67T>C Tyr23His
M0060231 CFLCIGPH_00007 5525 32 Skin 0.11 protein_coding missense_variant MODERATE 98C>A Pro33His
M0060232 CFLCIGPH_00007 5526 32 Skin 0.11 protein_coding synonymous_variant LOW 99C>A Pro33Pro
M0060233 CFLCIGPH_00010 8861 62 Skin 0.21 protein_coding synonymous_variant LOW 216G>C Ser72Ser
M0060234 CFLCIGPH_00011 9660 18 Skin 0.06 protein_coding synonymous_variant LOW 249A>G Arg83Arg
M0060235 CFLCIGPH_00007 5971 21 Skin 0.07 protein_coding synonymous_variant LOW 544C>T Leu182Leu
M0060236 CFLCIGPH_00007 6032 25 Skin 0.09 protein_coding missense_variant MODERATE 605A>G Lys202Arg
M0060237 CFLCIGPH_00007 6060 25 Skin 0.09 protein_coding synonymous_variant LOW 633C>T Thr211Thr
M0060238 CFLCIGPH_00007 6222 32 Skin 0.11 protein_coding synonymous_variant LOW 795G>A Gly265Gly
M0060239 CFLCIGPH_00007 6291 30 Skin 0.10 protein_coding synonymous_variant LOW 864G>A Val288Val
M0060240 CFLCIGPH_00009 7375 29 Skin 0.10 protein_coding synonymous_variant LOW 42T>C Ala14Ala
M0060241 CFLCIGPH_00009 7455 30 Skin 0.10 protein_coding missense_variant MODERATE 122G>A Arg41His
M0060242 CFLCIGPH_00009 7456 30 Skin 0.10 protein_coding synonymous_variant LOW 123C>T Arg41Arg
M0060243 CFLCIGPH_00009 7471 30 Skin 0.10 protein_coding synonymous_variant LOW 138T>C Asn46Asn
M0060244 CFLCIGPH_00009 7499 30 Skin 0.10 protein_coding missense_variant MODERATE 166G>A Val56Ile
M0060245 CFLCIGPH_00009 7504 30 Skin 0.10 protein_coding synonymous_variant LOW 171C>T Ala57Ala
M0060246 CFLCIGPH_00009 7505 30 Skin 0.10 protein_coding missense_variant MODERATE 172G>A Ala58Thr
M0060247 CFLCIGPH_00009 7520 30 Skin 0.10 protein_coding missense_variant MODERATE 187A>G Met63Val
M0060248 CFLCIGPH_00009 7531 30 Skin 0.10 protein_coding synonymous_variant LOW 198G>C Pro66Pro
M0060249 CFLCIGPH_00009 7561 30 Skin 0.10 protein_coding synonymous_variant LOW 228A>G Pro76Pro
M0060250 CFLCIGPH_00009 7600 30 Skin 0.10 protein_coding synonymous_variant LOW 267C>A Val89Val
M0060251 CFLCIGPH_00009 7627 30 Skin 0.10 protein_coding synonymous_variant LOW 294C>T Leu98Leu
M0060252 CFLCIGPH_00009 7670 29 Skin 0.10 protein_coding missense_variant MODERATE 337T>C Ser113Pro
M0060253 CFLCIGPH_00009 7672 29 Skin 0.10 protein_coding synonymous_variant LOW 339A>G Ser113Ser
M0060254 CFLCIGPH_00009 7679 29 Skin 0.10 protein_coding missense_variant MODERATE 346G>A Ala116Thr
M0060255 CFLCIGPH_00009 7687 29 Skin 0.10 protein_coding synonymous_variant LOW 354A>G Ala118Ala
M0060256 CFLCIGPH_00009 7705 29 Skin 0.10 protein_coding synonymous_variant LOW 372C>T Thr124Thr
M0060257 CFLCIGPH_00009 7714 29 Skin 0.10 protein_coding synonymous_variant LOW 381G>A Val127Val
M0060258 CFLCIGPH_00009 7718 30 Skin 0.10 protein_coding missense_variant MODERATE 385A>G Ile129Val
M0060259 CFLCIGPH_00009 7720 29 Skin 0.10 protein_coding synonymous_variant LOW 387T>C Ile129Ile
M0060260 CFLCIGPH_00009 7744 29 Skin 0.10 protein_coding synonymous_variant LOW 411A>G Lys137Lys
M0060261 CFLCIGPH_00009 7793 28 Skin 0.10 protein_coding missense_variant MODERATE 460G>A Ala154Thr
M0060262 CFLCIGPH_00009 7801 28 Skin 0.10 protein_coding synonymous_variant LOW 468C>T Asp156Asp
M0060263 CFLCIGPH_00009 7807 28 Skin 0.10 protein_coding synonymous_variant LOW 474A>G Thr158Thr
M0060264 CFLCIGPH_00009 7884 27 Skin 0.09 protein_coding missense_variant MODERATE 551C>G Thr184Ser
M0060265 CFLCIGPH_00009 7892 27 Skin 0.09 protein_coding missense_variant MODERATE 559G>A Ala187Thr
M0060266 CFLCIGPH_00009 7894 28 Skin 0.10 protein_coding synonymous_variant LOW 561G>C Ala187Ala
M0060267 CFLCIGPH_00009 7897 27 Skin 0.09 protein_coding synonymous_variant LOW 564G>A Thr188Thr
M0060268 CFLCIGPH_00009 7915 27 Skin 0.09 protein_coding synonymous_variant LOW 582G>A Glu194Glu
M0060269 CFLCIGPH_00009 7958 27 Skin 0.09 protein_coding synonymous_variant LOW 625C>T Leu209Leu
M0060270 CFLCIGPH_00009 7969 27 Skin 0.09 protein_coding synonymous_variant LOW 636T>C Arg212Arg
M0060271 CFLCIGPH_00009 7972 28 Skin 0.10 protein_coding synonymous_variant LOW 639A>G Glu213Glu
M0060272 CFLCIGPH_00009 7990 28 Skin 0.10 protein_coding synonymous_variant LOW 657T>C Ala219Ala
M0060273 CFLCIGPH_00010 8696 21 Skin 0.07 protein_coding synonymous_variant LOW 51G>A Arg17Arg
M0060274 CFLCIGPH_00010 8702 21 Skin 0.07 protein_coding synonymous_variant LOW 57G>A Val19Val
M0060275 CFLCIGPH_00010 8816 16 Skin 0.05 protein_coding missense_variant MODERATE 171G>A Met57Ile
M0060276 CFLCIGPH_00010 8837 17 Skin 0.06 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0060277 CFLCIGPH_00010 8840 16 Skin 0.05 protein_coding synonymous_variant LOW 195A>G Ala65Ala
M0060278 CFLCIGPH_00010 8867 16 Skin 0.05 protein_coding synonymous_variant LOW 222T>C Ser74Ser
M0060279 CFLCIGPH_00010 8870 16 Skin 0.05 protein_coding synonymous_variant LOW 225A>G Ser75Ser
M0060280 CFLCIGPH_00010 8901 16 Skin 0.05 protein_coding missense_variant MODERATE 256G>A Ala86Thr
M0060281 CFLCIGPH_00010 8906 16 Skin 0.05 protein_coding synonymous_variant LOW 261C>T Asp87Asp
M0060282 CFLCIGPH_00010 8924 16 Skin 0.05 protein_coding synonymous_variant LOW 279G>A Ala93Ala
M0060283 CFLCIGPH_00010 8925 16 Skin 0.05 protein_coding missense_variant MODERATE 280G>A Val94Ile
M0060284 CFLCIGPH_00010 8941 17 Skin 0.06 protein_coding missense_variant MODERATE 296C>T Ser99Leu
M0060285 CFLCIGPH_00010 8972 16 Skin 0.05 protein_coding missense_variant MODERATE 327T>G Asp109Glu
M0060286 CFLCIGPH_00010 8983 16 Skin 0.05 protein_coding missense_variant MODERATE 338A>G Asn113Ser
M0060287 CFLCIGPH_00010 8998 16 Skin 0.05 protein_coding missense_variant MODERATE 353T>C Val118Ala
M0060288 CFLCIGPH_00010 9003 16 Skin 0.05 protein_coding missense_variant MODERATE 358G>A Ala120Thr
M0060289 CFLCIGPH_00010 9008 16 Skin 0.05 protein_coding synonymous_variant LOW 363G>A Gly121Gly
M0060290 CFLCIGPH_00010 9047 16 Skin 0.05 protein_coding synonymous_variant LOW 402G>A Leu134Leu
M0060291 CFLCIGPH_00010 9060 16 Skin 0.05 protein_coding missense_variant MODERATE 415G>A Gly139Ser
M0060292 CFLCIGPH_00010 9066 16 Skin 0.05 protein_coding missense_variant MODERATE 421G>A Ala141Thr
M0060293 CFLCIGPH_00010 9079 16 Skin 0.05 protein_coding missense_variant MODERATE 434T>G Val145Gly
M0060294 CFLCIGPH_00010 9082 16 Skin 0.05 protein_coding missense_variant MODERATE 437G>A Arg146His
M0060295 CFLCIGPH_00010 9084 16 Skin 0.05 protein_coding missense_variant MODERATE 439G>C Gly147Arg
M0060296 CFLCIGPH_00010 9122 16 Skin 0.05 protein_coding synonymous_variant LOW 477G>C Arg159Arg
M0060297 CFLCIGPH_00010 9173 16 Skin 0.05 protein_coding synonymous_variant LOW 528C>T Ile176Ile
M0060298 CFLCIGPH_00010 9189 16 Skin 0.05 protein_coding missense_variant MODERATE 544G>A Val182Ile
M0060299 CFLCIGPH_00010 9240 16 Skin 0.05 protein_coding missense_variant MODERATE 595G>A Asp199Asn
M0060300 CFLCIGPH_00010 9263 16 Skin 0.05 protein_coding synonymous_variant LOW 618C>T Ile206Ile
M0060301 CFLCIGPH_00008 9320 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2137C>T None
M0060302 CFLCIGPH_00008 9329 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2146A>G None
M0060303 CFLCIGPH_00008 9338 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2155C>T None
M0060304 CFLCIGPH_00008 9346 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2163A>G None
M0060305 CFLCIGPH_00008 9369 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2186A>G None
M0060306 CFLCIGPH_00008 9385 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2202G>A None
M0060307 CFLCIGPH_00008 9406 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2223C>T None
M0060308 CFLCIGPH_00011 9427 17 Skin 0.06 protein_coding missense_variant MODERATE 16A>G Asn6Asp
M0060309 CFLCIGPH_00011 9447 17 Skin 0.06 protein_coding synonymous_variant LOW 36A>G Glu12Glu
M0060310 CFLCIGPH_00011 9513 16 Skin 0.05 protein_coding synonymous_variant LOW 102A>G Gly34Gly
M0060311 CFLCIGPH_00011 9519 16 Skin 0.05 protein_coding synonymous_variant LOW 108C>A Gly36Gly
M0060312 CFLCIGPH_00011 9525 16 Skin 0.05 protein_coding synonymous_variant LOW 114T>C Thr38Thr
M0060313 CFLCIGPH_00011 9594 17 Skin 0.06 protein_coding synonymous_variant LOW 183C>T Pro61Pro
M0060314 CFLCIGPH_00011 9613 17 Skin 0.06 protein_coding missense_variant MODERATE 202G>T Ala68Ser
M0060315 CFLCIGPH_00011 9615 17 Skin 0.06 protein_coding synonymous_variant LOW 204A>G Ala68Ala
M0060316 CFLCIGPH_00011 9624 17 Skin 0.06 protein_coding synonymous_variant LOW 213T>C Asp71Asp
M0060317 CFLCIGPH_00011 9702 17 Skin 0.06 protein_coding synonymous_variant LOW 291G>A Leu97Leu
M0060318 CFLCIGPH_00011 9703 18 Skin 0.06 protein_coding missense_variant MODERATE 292A>G Asn98Asp
M0060319 CFLCIGPH_00011 9729 17 Skin 0.06 protein_coding synonymous_variant LOW 318G>A Glu106Glu
M0060320 CFLCIGPH_00011 9772 23 Skin 0.08 protein_coding synonymous_variant LOW 361T>C Leu121Leu
M0060321 CFLCIGPH_00011 9795 21 Skin 0.07 protein_coding synonymous_variant LOW 384C>G Ser128Ser
M0060322 CFLCIGPH_00011 9816 21 Skin 0.07 protein_coding synonymous_variant LOW 405G>A Arg135Arg
M0060323 CFLCIGPH_00011 9820 21 Skin 0.07 protein_coding synonymous_variant LOW 409C>T Leu137Leu
M0060324 CFLCIGPH_00011 9823 22 Skin 0.07 protein_coding missense_variant MODERATE 412G>A Ala138Thr
M0060325 CFLCIGPH_00011 9865 17 Skin 0.06 protein_coding missense_variant MODERATE 454G>A Val152Ile
M0060326 CFLCIGPH_00011 9912 20 Skin 0.07 protein_coding synonymous_variant LOW 501C>T Ala167Ala
M0060327 CFLCIGPH_00012 9953 20 Skin 0.07 protein_coding missense_variant MODERATE 559A>G Ile187Val
M0060328 CFLCIGPH_00012 9989 68 Skin 0.23 protein_coding missense_variant MODERATE 523A>G Thr175Ala
M0060329 CFLCIGPH_00012 9992 18 Skin 0.06 protein_coding missense_variant MODERATE 520T>C Phe174Leu
M0060330 CFLCIGPH_00012 10021 68 Skin 0.23 protein_coding missense_variant MODERATE 491G>A Arg164Gln
M0060331 CFLCIGPH_00012 10029 18 Skin 0.06 protein_coding synonymous_variant LOW 483G>A Lys161Lys
M0060332 CFLCIGPH_00012 10035 18 Skin 0.06 protein_coding synonymous_variant LOW 477A>T Ala159Ala
M0060333 CFLCIGPH_00012 10161 14 Skin 0.05 protein_coding synonymous_variant LOW 351A>G Val117Val
M0060334 CFLCIGPH_00012 10186 17 Skin 0.06 protein_coding missense_variant MODERATE 326C>T Ala109Val
M0060335 CFLCIGPH_00012 10194 16 Skin 0.05 protein_coding synonymous_variant LOW 318C>G Arg106Arg
M0060336 CFLCIGPH_00012 10283 13 Skin 0.04 protein_coding missense_variant MODERATE 229G>A Ala77Thr
M0060337 CFLCIGPH_00012 10386 14 Skin 0.05 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0060338 CFLCIGPH_00012 10500 14 Skin 0.05 protein_coding synonymous_variant LOW 12A>G Pro4Pro
M0060339 CFLCIGPH_00010 8958 14 Skin 0.05 protein_coding missense_variant MODERATE 313G>A Ala105Thr
M0060340 CFLCIGPH_00006 5055 5 Skin 0.02 protein_coding missense_variant MODERATE 64G>A Glu22Lys
M0060341 CFLCIGPH_00003 6409 10 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3644G>C None
M0060342 CFLCIGPH_00003 6430 10 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3665A>C None
M0060343 CFLCIGPH_00003 6440 8 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3675A>G None
M0060344 CFLCIGPH_00003 6443 10 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3678A>G None
M0060345 CFLCIGPH_00008 6715 26 Skin 0.09 protein_coding missense_variant MODERATE 469A>G Asn157Asp
M0060346 CFLCIGPH_00008 6830 26 Skin 0.09 protein_coding synonymous_variant LOW 354T>C Asp118Asp
M0060347 CFLCIGPH_00008 6833 26 Skin 0.09 protein_coding synonymous_variant LOW 351T>C Gly117Gly
M0060348 CFLCIGPH_00008 6836 26 Skin 0.09 protein_coding synonymous_variant LOW 348A>G Lys116Lys
M0060349 CFLCIGPH_00008 6839 26 Skin 0.09 protein_coding synonymous_variant LOW 345C>T Val115Val
M0060350 CFLCIGPH_00008 6956 26 Skin 0.09 protein_coding synonymous_variant LOW 228A>G Lys76Lys
M0060351 CFLCIGPH_00008 6987 26 Skin 0.09 protein_coding missense_variant MODERATE 197G>A Gly66Glu
M0060352 CFLCIGPH_00008 7082 26 Skin 0.09 protein_coding synonymous_variant LOW 102A>G Gly34Gly
M0060353 CFLCIGPH_00008 7087 26 Skin 0.09 protein_coding missense_variant MODERATE 97G>A Gly33Ser
M0060354 CFLCIGPH_00008 7088 26 Skin 0.09 protein_coding synonymous_variant LOW 96A>G Ser32Ser
M0060355 CFLCIGPH_00008 7107 26 Skin 0.09 protein_coding missense_variant MODERATE 77C>T Pro26Leu
M0060356 CFLCIGPH_00008 7108 30 Skin 0.10 protein_coding missense_variant MODERATE 76C>T Pro26Ser
M0060357 CFLCIGPH_00008 7114 26 Skin 0.09 protein_coding missense_variant MODERATE 70T>C Ser24Pro
M0060358 CFLCIGPH_00008 7120 26 Skin 0.09 protein_coding missense_variant MODERATE 64A>G Ser22Gly
M0060359 CFLCIGPH_00008 7139 27 Skin 0.09 protein_coding synonymous_variant LOW 45C>T Tyr15Tyr
M0060360 CFLCIGPH_00008 7142 27 Skin 0.09 protein_coding synonymous_variant LOW 42A>G Gln14Gln
M0060361 CFLCIGPH_00003 7199 26 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4434C>T None
M0060362 CFLCIGPH_00003 7219 26 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4454C>T None
M0060363 CFLCIGPH_00003 7286 25 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4521G>A None
M0060364 CFLCIGPH_00003 7314 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4549T>C None
M0060365 CFLCIGPH_00009 7401 6 Skin 0.02 protein_coding missense_variant MODERATE 68C>T Ala23Val
M0060366 CFLCIGPH_00009 8082 27 Skin 0.09 protein_coding missense_variant MODERATE 749T>C Val250Ala
M0060367 CFLCIGPH_00009 8147 26 Skin 0.09 protein_coding synonymous_variant LOW 814C>T Leu272Leu
M0060368 CFLCIGPH_00009 8155 26 Skin 0.09 protein_coding synonymous_variant LOW 822G>A Val274Val
M0060369 CFLCIGPH_00009 8179 26 Skin 0.09 protein_coding synonymous_variant LOW 846G>C Pro282Pro
M0060370 CFLCIGPH_00009 8182 26 Skin 0.09 protein_coding synonymous_variant LOW 849C>T Asp283Asp
M0060371 CFLCIGPH_00009 8239 26 Skin 0.09 protein_coding synonymous_variant LOW 906T>C Pro302Pro
M0060372 CFLCIGPH_00009 8275 25 Skin 0.09 protein_coding synonymous_variant LOW 942C>G Arg314Arg
M0060373 CFLCIGPH_00009 8287 25 Skin 0.09 protein_coding synonymous_variant LOW 954T>C Ala318Ala
M0060374 CFLCIGPH_00009 8335 21 Skin 0.07 protein_coding synonymous_variant LOW 1002G>A Ala334Ala
M0060375 CFLCIGPH_00009 8372 21 Skin 0.07 protein_coding missense_variant MODERATE 1039A>G Ile347Val
M0060376 CFLCIGPH_00009 8380 21 Skin 0.07 protein_coding synonymous_variant LOW 1047A>G Gly349Gly
M0060377 CFLCIGPH_00009 8428 22 Skin 0.07 protein_coding synonymous_variant LOW 1095T>C Gly365Gly
M0060378 CFLCIGPH_00009 8440 22 Skin 0.07 protein_coding synonymous_variant LOW 1107T>A Gly369Gly
M0060379 CFLCIGPH_00009 8443 22 Skin 0.07 protein_coding synonymous_variant LOW 1110G>A Gly370Gly
M0060380 CFLCIGPH_00001 1230 23 Skin 0.08 protein_coding missense_variant MODERATE 1129C>T Pro377Ser
M0060381 CFLCIGPH_00002 1465 35 Skin 0.12 protein_coding missense_variant MODERATE 61G>A Asp21Asn
M0060382 CFLCIGPH_00004 2459 17 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -700C>G None
M0060383 CFLCIGPH_00007 6355 3 Skin 0.01 protein_coding missense_variant MODERATE 928A>T Asn310Tyr
M0060384 CFLCIGPH_00009 7536 4 Skin 0.01 protein_coding stop_gained HIGH 203G>A Trp68*
M0060385 CFLCIGPH_00008 9945 44 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2762C>T None
M0060386 CFLCIGPH_00012 9960 44 Skin 0.15 protein_coding synonymous_variant LOW 552T>C Tyr184Tyr
M0060387 CFLCIGPH_00009 8524 21 Skin 0.07 protein_coding synonymous_variant LOW 1191T>C Asp397Asp
M0060388 CFLCIGPH_00009 8528 21 Skin 0.07 protein_coding missense_variant MODERATE 1195A>G Asn399Asp
M0060389 CFLCIGPH_00009 8562 21 Skin 0.07 protein_coding missense_variant MODERATE 1229A>G Gln410Arg
M0060390 CFLCIGPH_00008 8581 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1398G>A None
M0060391 CFLCIGPH_00008 8583 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1400A>G None
M0060392 CFLCIGPH_00008 8585 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1402A>G None
M0060393 CFLCIGPH_00008 8587 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1404G>A None
M0060394 CFLCIGPH_00008 8598 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1415T>C None
M0060395 CFLCIGPH_00008 8602 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1419C>G None
M0060396 CFLCIGPH_00008 8603 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1420A>T None
M0060397 CFLCIGPH_00008 8609 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1426C>T None
M0060398 CFLCIGPH_00008 8613 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1430C>T None
M0060399 CFLCIGPH_00008 8624 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1441T>C None
M0060400 CFLCIGPH_00008 8626 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1443T>C None
M0060401 CFLCIGPH_00008 8627 21 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1444C>T None
M0060402 CFLCIGPH_00005 4718 15 Skin 0.05 protein_coding missense_variant MODERATE 1265A>G Glu422Gly
M0060403 CFLCIGPH_00007 6267 3 Skin 0.01 protein_coding missense_variant MODERATE 840A>C Gln280His
M0060404 CFLCIGPH_00007 6268 3 Skin 0.01 protein_coding missense_variant MODERATE 841G>A Val281Met
M0060405 CFLCIGPH_00007 6290 4 Skin 0.01 protein_coding missense_variant MODERATE 863T>C Val288Ala
M0060406 CFLCIGPH_00007 6310 3 Skin 0.01 protein_coding missense_variant MODERATE 883A>G Lys295Glu
M0060407 CFLCIGPH_00004 3316 5 Skin 0.02 protein_coding missense_variant MODERATE 158G>A Arg53His
M0060408 CFLCIGPH_00009 7973 12 Skin 0.04 protein_coding missense_variant MODERATE 640G>A Glu214Lys
M0060409 CFLCIGPH_00008 6566 3 Skin 0.01 protein_coding synonymous_variant LOW 618C>T Ala206Ala
M0060410 CFLCIGPH_00010 8784 3 Skin 0.01 protein_coding stop_gained HIGH 139C>T Gln47*
M0060411 CFLCIGPH_00002 1699 5 Skin 0.02 protein_coding missense_variant MODERATE 295G>A Ala99Thr
M0060412 CFLCIGPH_00002 1797 6 Skin 0.02 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0060413 CFLCIGPH_00002 1851 6 Skin 0.02 protein_coding synonymous_variant LOW 447C>T Ile149Ile
M0060414 CFLCIGPH_00002 1896 6 Skin 0.02 protein_coding synonymous_variant LOW 492G>A Thr164Thr
M0060415 CFLCIGPH_00002 1899 6 Skin 0.02 protein_coding synonymous_variant LOW 495G>A Arg165Arg
M0060416 CFLCIGPH_00002 1909 6 Skin 0.02 protein_coding missense_variant MODERATE 505G>A Val169Ile
M0060417 CFLCIGPH_00002 1943 8 Skin 0.03 protein_coding missense_variant MODERATE 539T>C Val180Ala
M0060418 CFLCIGPH_00002 2038 7 Skin 0.02 protein_coding missense_variant MODERATE 634A>G Ser212Gly
M0060419 CFLCIGPH_00002 2044 8 Skin 0.03 protein_coding synonymous_variant LOW 640A>C Arg214Arg
M0060420 CFLCIGPH_00002 2061 7 Skin 0.02 protein_coding synonymous_variant LOW 657C>T Gly219Gly
M0060421 CFLCIGPH_00002 2063 8 Skin 0.03 protein_coding missense_variant MODERATE 659A>G Lys220Arg
M0060422 CFLCIGPH_00002 2112 7 Skin 0.02 protein_coding synonymous_variant LOW 708C>T Asp236Asp
M0060423 CFLCIGPH_00002 2159 5 Skin 0.02 protein_coding missense_variant MODERATE 755G>A Arg252His
M0060424 CFLCIGPH_00002 2163 5 Skin 0.02 protein_coding synonymous_variant LOW 759G>A Gly253Gly
M0060425 CFLCIGPH_00002 2201 5 Skin 0.02 protein_coding missense_variant MODERATE 797C>T Pro266Leu
M0060426 CFLCIGPH_00002 2214 5 Skin 0.02 protein_coding synonymous_variant LOW 810G>A Ser270Ser
M0060427 CFLCIGPH_00001 1072 7 Skin 0.02 protein_coding missense_variant MODERATE 971T>C Val324Ala
M0060428 CFLCIGPH_00009 8391 4 Skin 0.01 protein_coding missense_variant MODERATE 1058A>G Asp353Gly
M0060429 CFLCIGPH_00004 3166 4 Skin 0.01 protein_coding missense_variant MODERATE 8C>T Ser3Leu
M0060430 CFLCIGPH_00003 2823 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -58T>C None
M0060431 CFLCIGPH_00006 5378 3 Skin 0.01 protein_coding synonymous_variant LOW 387C>A Ser129Ser
M0060432 CFLCIGPH_00003 2779 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -14T>C None
M0060433 CFLCIGPH_00002 1431 3 Skin 0.01 protein_coding missense_variant MODERATE 27G>C Gln9His
M0060434 CFLCIGPH_00011 9801 3 Skin 0.01 protein_coding synonymous_variant LOW 390G>A Pro130Pro
M0060435 CFLCIGPH_00002 1515 3 Skin 0.01 protein_coding synonymous_variant LOW 111G>A Val37Val
M0060436 CFLCIGPH_00002 1566 4 Skin 0.01 protein_coding synonymous_variant LOW 162G>A Gly54Gly
M0060437 CFLCIGPH_00002 1611 5 Skin 0.02 protein_coding synonymous_variant LOW 207G>A Leu69Leu
M0060438 CFLCIGPH_00002 1635 4 Skin 0.01 protein_coding synonymous_variant LOW 231G>A Ala77Ala
M0060439 CFLCIGPH_00002 1668 4 Skin 0.01 protein_coding synonymous_variant LOW 264C>T Arg88Arg
M0060440 CFLCIGPH_00002 1677 4 Skin 0.01 protein_coding synonymous_variant LOW 273A>G Leu91Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term