Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2800
  Reference Plasmid   DP1806001279_bin.2__NODE_129_length_8261_cov_1.258515
  Reference Plasmid Size   8261
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0060457 PBIFDPGJ_00011 6330 4 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -7A>G None
M0060458 PBIFDPGJ_00011 6370 4 Skin 0.24 protein_coding missense_variant MODERATE 34G>A Ala12Thr
M0060459 PBIFDPGJ_00011 6376 4 Skin 0.24 protein_coding missense_variant MODERATE 40A>G Thr14Ala
M0060460 PBIFDPGJ_00011 6403 4 Skin 0.24 protein_coding missense_variant MODERATE 67G>A Gly23Ser
M0060461 PBIFDPGJ_00011 6419 4 Skin 0.24 protein_coding missense_variant MODERATE 83A>T Asp28Val
M0060462 PBIFDPGJ_00011 6420 4 Skin 0.24 protein_coding synonymous_variant LOW 84T>C Asp28Asp
M0060463 PBIFDPGJ_00011 6424 4 Skin 0.24 protein_coding missense_variant MODERATE 88A>G Thr30Ala
M0060464 PBIFDPGJ_00011 6432 4 Skin 0.24 protein_coding synonymous_variant LOW 96G>C Ala32Ala
M0060465 PBIFDPGJ_00011 6435 4 Skin 0.24 protein_coding synonymous_variant LOW 99A>G Gln33Gln
M0060466 PBIFDPGJ_00011 6438 4 Skin 0.24 protein_coding synonymous_variant LOW 102T>A Gly34Gly
M0060467 PBIFDPGJ_00002 390 4 Skin 0.24 protein_coding missense_variant MODERATE 21C>G Phe7Leu
M0060468 PBIFDPGJ_00002 392 4 Skin 0.24 protein_coding missense_variant MODERATE 23A>G Lys8Arg
M0060469 PBIFDPGJ_00002 547 5 Skin 0.29 protein_coding missense_variant MODERATE 178G>A Gly60Ser
M0060470 PBIFDPGJ_00003 894 4 Skin 0.24 protein_coding synonymous_variant LOW 13C>T Leu5Leu
M0060471 PBIFDPGJ_00003 935 4 Skin 0.24 protein_coding synonymous_variant LOW 54A>G Gln18Gln
M0060472 PBIFDPGJ_00003 1187 5 Skin 0.29 protein_coding synonymous_variant LOW 306T>C Ser102Ser
M0060473 PBIFDPGJ_00003 1188 5 Skin 0.29 protein_coding missense_variant MODERATE 307G>A Glu103Lys
M0060474 PBIFDPGJ_00003 1189 5 Skin 0.29 protein_coding missense_variant MODERATE 308A>G Glu103Gly
M0060475 PBIFDPGJ_00003 1190 5 Skin 0.29 protein_coding synonymous_variant LOW 309A>G Glu103Glu
M0060476 PBIFDPGJ_00003 1196 5 Skin 0.29 protein_coding synonymous_variant LOW 315T>C Ala105Ala
M0060477 PBIFDPGJ_00003 1199 5 Skin 0.29 protein_coding synonymous_variant LOW 318A>G Glu106Glu
M0060478 PBIFDPGJ_00003 1254 4 Skin 0.24 protein_coding missense_variant MODERATE 373A>G Ser125Gly
M0060479 PBIFDPGJ_00003 1277 4 Skin 0.24 protein_coding missense_variant MODERATE 396G>C Arg132Ser
M0060480 PBIFDPGJ_00004 1362 4 Skin 0.24 protein_coding synonymous_variant LOW 36T>C Phe12Phe
M0060481 PBIFDPGJ_00002 449 3 Skin 0.18 protein_coding missense_variant MODERATE 80G>A Arg27Gln
M0060482 PBIFDPGJ_00002 450 3 Skin 0.18 protein_coding synonymous_variant LOW 81G>A Arg27Arg
M0060483 PBIFDPGJ_00002 486 3 Skin 0.18 protein_coding synonymous_variant LOW 117T>C Tyr39Tyr
M0060484 PBIFDPGJ_00002 488 3 Skin 0.18 protein_coding missense_variant MODERATE 119T>C Ile40Thr
M0060485 PBIFDPGJ_00002 546 3 Skin 0.18 protein_coding synonymous_variant LOW 177C>T Ser59Ser
M0060486 PBIFDPGJ_00002 559 3 Skin 0.18 protein_coding missense_variant MODERATE 190A>G Thr64Ala
M0060487 PBIFDPGJ_00002 561 3 Skin 0.18 protein_coding synonymous_variant LOW 192T>C Thr64Thr
M0060488 PBIFDPGJ_00002 564 3 Skin 0.18 protein_coding synonymous_variant LOW 195C>T Ala65Ala
M0060489 PBIFDPGJ_00005 1919 3 Skin 0.18 protein_coding synonymous_variant LOW 339C>T Gly113Gly
M0060490 PBIFDPGJ_00005 1931 3 Skin 0.18 protein_coding synonymous_variant LOW 351T>C Pro117Pro
M0060491 PBIFDPGJ_00005 1943 3 Skin 0.18 protein_coding synonymous_variant LOW 363G>A Arg121Arg
M0060492 PBIFDPGJ_00005 1948 3 Skin 0.18 protein_coding missense_variant MODERATE 368G>C Gly123Ala
M0060493 PBIFDPGJ_00005 2877 4 Skin 0.24 protein_coding missense_variant MODERATE 1297A>G Thr433Ala
M0060494 PBIFDPGJ_00010 5605 3 Skin 0.18 protein_coding missense_variant MODERATE 454A>G Asn152Asp
M0060495 PBIFDPGJ_00010 5706 3 Skin 0.18 protein_coding synonymous_variant LOW 555T>C Asp185Asp
M0060496 PBIFDPGJ_00010 5712 3 Skin 0.18 protein_coding synonymous_variant LOW 561A>C Arg187Arg
M0060497 PBIFDPGJ_00010 5714 3 Skin 0.18 protein_coding missense_variant MODERATE 563G>A Arg188Lys
M0060498 PBIFDPGJ_00010 5718 3 Skin 0.18 protein_coding synonymous_variant LOW 567G>C Arg189Arg
M0060499 PBIFDPGJ_00010 5721 3 Skin 0.18 protein_coding synonymous_variant LOW 570C>T Ser190Ser
M0060500 PBIFDPGJ_00010 5727 3 Skin 0.18 protein_coding synonymous_variant LOW 576T>C His192His
M0060501 PBIFDPGJ_00013 8043 3 Skin 0.18 protein_coding synonymous_variant LOW 129G>A Gln43Gln
M0060502 PBIFDPGJ_00013 8099 3 Skin 0.18 protein_coding missense_variant MODERATE 73G>A Gly25Arg
M0060503 PBIFDPGJ_00013 8114 3 Skin 0.18 protein_coding missense_variant MODERATE 58C>G His20Asp
M0060504 PBIFDPGJ_00013 8130 3 Skin 0.18 protein_coding synonymous_variant LOW 42T>C Gly14Gly
M0060505 PBIFDPGJ_00010 5823 3 Skin 0.18 protein_coding synonymous_variant LOW 672C>T Ala224Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term