Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2802
  Reference Plasmid   DP1806001340_bin.1_new__NODE_470_length_3943_cov_0.904527
  Reference Plasmid Size   3943
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0060546 DBCDOMJI_00001 89 3 Skin 1.00 protein_coding synonymous_variant LOW 15A>G Gly5Gly
M0060547 DBCDOMJI_00001 186 3 Skin 1.00 protein_coding synonymous_variant LOW 112A>C Arg38Arg
M0060548 DBCDOMJI_00001 338 3 Skin 1.00 protein_coding synonymous_variant LOW 264A>G Ala88Ala
M0060549 DBCDOMJI_00001 449 3 Skin 1.00 protein_coding synonymous_variant LOW 375G>T Thr125Thr
M0060550 DBCDOMJI_00001 452 3 Skin 1.00 protein_coding synonymous_variant LOW 378C>A Val126Val
M0060551 DBCDOMJI_00001 458 3 Skin 1.00 protein_coding synonymous_variant LOW 384T>G Val128Val
M0060552 DBCDOMJI_00003 1921 3 Skin 1.00 protein_coding missense_variant MODERATE 166T>C Ser56Pro
M0060553 DBCDOMJI_00003 2130 3 Skin 1.00 protein_coding synonymous_variant LOW 375T>C Leu125Leu
M0060554 DBCDOMJI_00003 2279 3 Skin 1.00 protein_coding missense_variant MODERATE 524G>A Arg175His
M0060555 DBCDOMJI_00003 2353 3 Skin 1.00 protein_coding missense_variant MODERATE 598G>A Asp200Asn
M0060556 DBCDOMJI_00004 3359 3 Skin 1.00 protein_coding synonymous_variant LOW 840A>G Ser280Ser
M0060557 DBCDOMJI_00004 3431 3 Skin 1.00 protein_coding missense_variant MODERATE 912G>C Glu304Asp
M0060558 DBCDOMJI_00004 3463 3 Skin 1.00 protein_coding missense_variant MODERATE 944A>G Gln315Arg
M0060559 DBCDOMJI_00004 3467 3 Skin 1.00 protein_coding synonymous_variant LOW 948A>G Val316Val
M0060560 DBCDOMJI_00004 3494 3 Skin 1.00 protein_coding synonymous_variant LOW 975A>G Glu325Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term