Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2804
  Reference Plasmid   DP1806001340_bin.2__NODE_1_length_22852_cov_5.633894
  Reference Plasmid Size   22852
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0060605 ILEGKAFM_00012 13486 3 Skin 0.14 protein_coding synonymous_variant LOW 996C>T Ala332Ala
M0060606 ILEGKAFM_00012 13489 3 Skin 0.14 protein_coding synonymous_variant LOW 993T>C Leu331Leu
M0060607 ILEGKAFM_00012 13507 3 Skin 0.14 protein_coding synonymous_variant LOW 975T>C Gly325Gly
M0060608 ILEGKAFM_00012 13564 3 Skin 0.14 protein_coding synonymous_variant LOW 918A>G Lys306Lys
M0060609 ILEGKAFM_00012 13582 3 Skin 0.14 protein_coding synonymous_variant LOW 900T>C Asp300Asp
M0060610 ILEGKAFM_00012 13588 3 Skin 0.14 protein_coding synonymous_variant LOW 894T>C Asp298Asp
M0060611 ILEGKAFM_00012 13591 3 Skin 0.14 protein_coding synonymous_variant LOW 891T>C Gly297Gly
M0060612 ILEGKAFM_00012 13603 3 Skin 0.14 protein_coding synonymous_variant LOW 879A>G Val293Val
M0060613 ILEGKAFM_00012 13666 3 Skin 0.14 protein_coding synonymous_variant LOW 816T>C Ile272Ile
M0060614 ILEGKAFM_00012 13672 3 Skin 0.14 protein_coding synonymous_variant LOW 810C>A Pro270Pro
M0060615 ILEGKAFM_00012 13675 3 Skin 0.14 protein_coding synonymous_variant LOW 807G>T Leu269Leu
M0060616 ILEGKAFM_00013 14720 6 Skin 0.27 protein_coding synonymous_variant LOW 1203T>C Ser401Ser
M0060617 ILEGKAFM_00004 3450 3 Skin 0.14 protein_coding synonymous_variant LOW 2472G>A Arg824Arg
M0060618 ILEGKAFM_00004 3560 3 Skin 0.14 protein_coding missense_variant MODERATE 2362A>T Met788Leu
M0060619 ILEGKAFM_00004 3561 3 Skin 0.14 protein_coding synonymous_variant LOW 2361C>T Asn787Asn
M0060620 ILEGKAFM_00004 3563 3 Skin 0.14 protein_coding missense_variant MODERATE 2359A>C Asn787His
M0060621 ILEGKAFM_00004 3570 3 Skin 0.14 protein_coding synonymous_variant LOW 2352C>A Arg784Arg
M0060622 ILEGKAFM_00004 3571 3 Skin 0.14 protein_coding missense_variant MODERATE 2351G>A Arg784His
M0060623 ILEGKAFM_00004 3579 3 Skin 0.14 protein_coding synonymous_variant LOW 2343A>G Glu781Glu
M0060624 ILEGKAFM_00004 3582 3 Skin 0.14 protein_coding synonymous_variant LOW 2340G>C Pro780Pro
M0060625 ILEGKAFM_00004 3585 3 Skin 0.14 protein_coding synonymous_variant LOW 2337T>C Gly779Gly
M0060626 ILEGKAFM_00004 3606 3 Skin 0.14 protein_coding synonymous_variant LOW 2316A>G Glu772Glu
M0060627 ILEGKAFM_00004 3612 3 Skin 0.14 protein_coding synonymous_variant LOW 2310G>A Gly770Gly
M0060628 ILEGKAFM_00004 3624 3 Skin 0.14 protein_coding synonymous_variant LOW 2298C>G Val766Val
M0060629 ILEGKAFM_00004 3642 3 Skin 0.14 protein_coding synonymous_variant LOW 2280A>C Gly760Gly
M0060630 ILEGKAFM_00004 3648 3 Skin 0.14 protein_coding synonymous_variant LOW 2274G>A Lys758Lys
M0060631 ILEGKAFM_00004 3693 3 Skin 0.14 protein_coding synonymous_variant LOW 2229C>T Gly743Gly
M0060632 ILEGKAFM_00004 3708 3 Skin 0.14 protein_coding synonymous_variant LOW 2214C>T Leu738Leu
M0060633 ILEGKAFM_00004 3713 3 Skin 0.14 protein_coding missense_variant MODERATE 2209C>A Gln737Lys
M0060634 ILEGKAFM_00004 3992 3 Skin 0.14 protein_coding synonymous_variant LOW 1930T>C Leu644Leu
M0060635 ILEGKAFM_00004 3995 3 Skin 0.14 protein_coding missense_variant MODERATE 1927A>C Met643Leu
M0060636 ILEGKAFM_00004 3998 3 Skin 0.14 protein_coding missense_variant MODERATE 1924A>C Asn642His
M0060637 ILEGKAFM_00004 3999 3 Skin 0.14 protein_coding synonymous_variant LOW 1923C>T Gly641Gly
M0060638 ILEGKAFM_00004 4000 3 Skin 0.14 protein_coding missense_variant MODERATE 1922G>A Gly641Asp
M0060639 ILEGKAFM_00004 4004 3 Skin 0.14 protein_coding synonymous_variant LOW 1918T>C Leu640Leu
M0060640 ILEGKAFM_00004 4041 3 Skin 0.14 protein_coding synonymous_variant LOW 1881C>T Leu627Leu
M0060641 ILEGKAFM_00004 4080 3 Skin 0.14 protein_coding synonymous_variant LOW 1842T>C Ala614Ala
M0060642 ILEGKAFM_00004 4100 3 Skin 0.14 protein_coding synonymous_variant LOW 1822C>T Leu608Leu
M0060643 ILEGKAFM_00004 4103 3 Skin 0.14 protein_coding synonymous_variant LOW 1819T>C Leu607Leu
M0060644 ILEGKAFM_00004 4105 3 Skin 0.14 protein_coding missense_variant MODERATE 1817C>A Ala606Glu
M0060645 ILEGKAFM_00004 4107 3 Skin 0.14 protein_coding synonymous_variant LOW 1815G>A Glu605Glu
M0060646 ILEGKAFM_00004 4110 3 Skin 0.14 protein_coding synonymous_variant LOW 1812A>G Ala604Ala
M0060647 ILEGKAFM_00004 4130 3 Skin 0.14 protein_coding synonymous_variant LOW 1792C>T Leu598Leu
M0060648 ILEGKAFM_00004 4158 3 Skin 0.14 protein_coding synonymous_variant LOW 1764C>T Thr588Thr
M0060649 ILEGKAFM_00004 4182 3 Skin 0.14 protein_coding synonymous_variant LOW 1740A>G Ala580Ala
M0060650 ILEGKAFM_00004 4184 3 Skin 0.14 protein_coding missense_variant MODERATE 1738G>T Ala580Ser
M0060651 ILEGKAFM_00004 4193 3 Skin 0.14 protein_coding missense_variant MODERATE 1729T>A Ser577Thr
M0060652 ILEGKAFM_00004 4215 3 Skin 0.14 protein_coding synonymous_variant LOW 1707G>A Leu569Leu
M0060653 ILEGKAFM_00004 4239 3 Skin 0.14 protein_coding synonymous_variant LOW 1683G>A Glu561Glu
M0060654 ILEGKAFM_00004 4278 3 Skin 0.14 protein_coding synonymous_variant LOW 1644A>G Ala548Ala
M0060655 ILEGKAFM_00004 4307 3 Skin 0.14 protein_coding synonymous_variant LOW 1615C>A Arg539Arg
M0060656 ILEGKAFM_00004 4335 3 Skin 0.14 protein_coding synonymous_variant LOW 1587A>G Val529Val
M0060657 ILEGKAFM_00004 4388 3 Skin 0.14 protein_coding missense_variant MODERATE 1534G>A Val512Ile
M0060658 ILEGKAFM_00004 4392 3 Skin 0.14 protein_coding synonymous_variant LOW 1530T>C Ala510Ala
M0060659 ILEGKAFM_00004 4767 4 Skin 0.18 protein_coding synonymous_variant LOW 1155A>G Thr385Thr
M0060660 ILEGKAFM_00004 4770 4 Skin 0.18 protein_coding synonymous_variant LOW 1152A>C Arg384Arg
M0060661 ILEGKAFM_00004 4784 4 Skin 0.18 protein_coding missense_variant MODERATE 1138A>G Ile380Val
M0060662 ILEGKAFM_00004 4917 4 Skin 0.18 protein_coding synonymous_variant LOW 1005A>G Val335Val
M0060663 ILEGKAFM_00004 4945 4 Skin 0.18 protein_coding missense_variant MODERATE 977T>C Met326Thr
M0060664 ILEGKAFM_00004 4956 4 Skin 0.18 protein_coding synonymous_variant LOW 966G>C Gly322Gly
M0060665 ILEGKAFM_00004 4980 4 Skin 0.18 protein_coding synonymous_variant LOW 942T>C Gly314Gly
M0060666 ILEGKAFM_00004 4995 4 Skin 0.18 protein_coding synonymous_variant LOW 927T>C Tyr309Tyr
M0060667 ILEGKAFM_00004 5075 4 Skin 0.18 protein_coding missense_variant MODERATE 847G>T Ala283Ser
M0060668 ILEGKAFM_00005 6069 3 Skin 0.14 protein_coding missense_variant MODERATE 1298G>A Arg433Gln
M0060669 ILEGKAFM_00005 6230 4 Skin 0.18 protein_coding synonymous_variant LOW 1137T>C Thr379Thr
M0060670 ILEGKAFM_00009 9786 7 Skin 0.32 protein_coding missense_variant MODERATE 50T>C Val17Ala
M0060671 ILEGKAFM_00009 9794 7 Skin 0.32 protein_coding synonymous_variant LOW 42T>C Ala14Ala
M0060672 ILEGKAFM_00009 9821 7 Skin 0.32 protein_coding synonymous_variant LOW 15C>A Ile5Ile
M0060673 ILEGKAFM_00004 9837 7 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -3916C>T None
M0060674 ILEGKAFM_00010 10010 8 Skin 0.36 protein_coding synonymous_variant LOW 489G>A Ser163Ser
M0060675 ILEGKAFM_00010 10031 8 Skin 0.36 protein_coding synonymous_variant LOW 468T>C Ser156Ser
M0060676 ILEGKAFM_00010 10052 8 Skin 0.36 protein_coding synonymous_variant LOW 447T>C Asp149Asp
M0060677 ILEGKAFM_00010 10067 8 Skin 0.36 protein_coding synonymous_variant LOW 432G>A Thr144Thr
M0060678 ILEGKAFM_00010 10074 8 Skin 0.36 protein_coding missense_variant MODERATE 425C>A Ala142Asp
M0060679 ILEGKAFM_00010 10081 8 Skin 0.36 protein_coding synonymous_variant LOW 418T>C Leu140Leu
M0060680 ILEGKAFM_00010 10085 8 Skin 0.36 protein_coding synonymous_variant LOW 414C>T Asn138Asn
M0060681 ILEGKAFM_00010 10092 8 Skin 0.36 protein_coding missense_variant MODERATE 407A>G Gln136Arg
M0060682 ILEGKAFM_00010 10093 8 Skin 0.36 protein_coding missense_variant MODERATE 406C>A Gln136Lys
M0060683 ILEGKAFM_00010 10103 8 Skin 0.36 protein_coding synonymous_variant LOW 396G>T Thr132Thr
M0060684 ILEGKAFM_00010 10105 8 Skin 0.36 protein_coding missense_variant MODERATE 394A>G Thr132Ala
M0060685 ILEGKAFM_00010 10106 8 Skin 0.36 protein_coding synonymous_variant LOW 393G>C Val131Val
M0060686 ILEGKAFM_00010 10118 8 Skin 0.36 protein_coding synonymous_variant LOW 381G>A Val127Val
M0060687 ILEGKAFM_00010 10127 8 Skin 0.36 protein_coding synonymous_variant LOW 372A>G Arg124Arg
M0060688 ILEGKAFM_00010 10139 8 Skin 0.36 protein_coding synonymous_variant LOW 360C>T Asn120Asn
M0060689 ILEGKAFM_00010 10169 8 Skin 0.36 protein_coding synonymous_variant LOW 330C>T Asn110Asn
M0060690 ILEGKAFM_00010 10178 8 Skin 0.36 protein_coding synonymous_variant LOW 321T>C Asn107Asn
M0060691 ILEGKAFM_00010 10199 8 Skin 0.36 protein_coding synonymous_variant LOW 300C>T Gly100Gly
M0060692 ILEGKAFM_00010 10211 8 Skin 0.36 protein_coding synonymous_variant LOW 288C>T Asn96Asn
M0060693 ILEGKAFM_00010 10223 8 Skin 0.36 protein_coding synonymous_variant LOW 276A>C Pro92Pro
M0060694 ILEGKAFM_00011 10723 8 Skin 0.36 protein_coding synonymous_variant LOW 1479G>A Leu493Leu
M0060695 ILEGKAFM_00011 10972 8 Skin 0.36 protein_coding synonymous_variant LOW 1230A>G Lys410Lys
M0060696 ILEGKAFM_00011 10981 8 Skin 0.36 protein_coding synonymous_variant LOW 1221C>T Phe407Phe
M0060697 ILEGKAFM_00011 10987 8 Skin 0.36 protein_coding synonymous_variant LOW 1215G>C Pro405Pro
M0060698 ILEGKAFM_00011 11008 8 Skin 0.36 protein_coding synonymous_variant LOW 1194G>C Gly398Gly
M0060699 ILEGKAFM_00011 11038 8 Skin 0.36 protein_coding synonymous_variant LOW 1164G>A Gln388Gln
M0060700 ILEGKAFM_00011 11065 8 Skin 0.36 protein_coding synonymous_variant LOW 1137A>G Lys379Lys
M0060701 ILEGKAFM_00011 11074 8 Skin 0.36 protein_coding synonymous_variant LOW 1128T>C Phe376Phe
M0060702 ILEGKAFM_00011 11095 8 Skin 0.36 protein_coding synonymous_variant LOW 1107A>G Gln369Gln
M0060703 ILEGKAFM_00011 11098 8 Skin 0.36 protein_coding synonymous_variant LOW 1104G>C Leu368Leu
M0060704 ILEGKAFM_00011 11107 8 Skin 0.36 protein_coding synonymous_variant LOW 1095G>A Val365Val
M0060705 ILEGKAFM_00011 11110 8 Skin 0.36 protein_coding synonymous_variant LOW 1092T>C Phe364Phe
M0060706 ILEGKAFM_00011 11129 8 Skin 0.36 protein_coding missense_variant MODERATE 1073A>T Tyr358Phe
M0060707 ILEGKAFM_00011 11131 8 Skin 0.36 protein_coding synonymous_variant LOW 1071C>A Ser357Ser
M0060708 ILEGKAFM_00011 11143 8 Skin 0.36 protein_coding synonymous_variant LOW 1059T>C Ser353Ser
M0060709 ILEGKAFM_00011 11145 8 Skin 0.36 protein_coding missense_variant MODERATE 1057T>G Ser353Ala
M0060710 ILEGKAFM_00011 11148 8 Skin 0.36 protein_coding missense_variant MODERATE 1054G>A Asp352Asn
M0060711 ILEGKAFM_00011 11161 8 Skin 0.36 protein_coding synonymous_variant LOW 1041C>A Thr347Thr
M0060712 ILEGKAFM_00006 7616 5 Skin 0.23 protein_coding synonymous_variant LOW 18T>C Thr6Thr
M0060713 ILEGKAFM_00006 7757 5 Skin 0.23 protein_coding synonymous_variant LOW 159G>T Arg53Arg
M0060714 ILEGKAFM_00006 7772 5 Skin 0.23 protein_coding synonymous_variant LOW 174C>G Ala58Ala
M0060715 ILEGKAFM_00006 7826 5 Skin 0.23 protein_coding synonymous_variant LOW 228C>T Arg76Arg
M0060716 ILEGKAFM_00007 7887 5 Skin 0.23 protein_coding missense_variant MODERATE 59G>A Gly20Glu
M0060717 ILEGKAFM_00007 7933 5 Skin 0.23 protein_coding synonymous_variant LOW 105T>C Asn35Asn
M0060718 ILEGKAFM_00007 7934 5 Skin 0.23 protein_coding synonymous_variant LOW 106C>T Leu36Leu
M0060719 ILEGKAFM_00007 7936 5 Skin 0.23 protein_coding synonymous_variant LOW 108G>C Leu36Leu
M0060720 ILEGKAFM_00007 7939 5 Skin 0.23 protein_coding synonymous_variant LOW 111T>C Ala37Ala
M0060721 ILEGKAFM_00012 14236 6 Skin 0.27 protein_coding synonymous_variant LOW 246T>C Asn82Asn
M0060722 ILEGKAFM_00012 14242 6 Skin 0.27 protein_coding synonymous_variant LOW 240C>T Phe80Phe
M0060723 ILEGKAFM_00012 14248 6 Skin 0.27 protein_coding synonymous_variant LOW 234A>C Val78Val
M0060724 ILEGKAFM_00012 14251 6 Skin 0.27 protein_coding synonymous_variant LOW 231G>C Thr77Thr
M0060725 ILEGKAFM_00012 14254 6 Skin 0.27 protein_coding synonymous_variant LOW 228A>C Leu76Leu
M0060726 ILEGKAFM_00012 14272 6 Skin 0.27 protein_coding synonymous_variant LOW 210A>G Val70Val
M0060727 ILEGKAFM_00012 14284 6 Skin 0.27 protein_coding synonymous_variant LOW 198C>T Tyr66Tyr
M0060728 ILEGKAFM_00012 14347 6 Skin 0.27 protein_coding synonymous_variant LOW 135T>C Val45Val
M0060729 ILEGKAFM_00012 14470 5 Skin 0.23 protein_coding synonymous_variant LOW 12C>T Ala4Ala
M0060730 ILEGKAFM_00009 14485 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4650C>T None
M0060731 ILEGKAFM_00009 14492 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4657T>C None
M0060732 ILEGKAFM_00009 14493 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4658C>T None
M0060733 ILEGKAFM_00009 14494 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4659T>C None
M0060734 ILEGKAFM_00013 15449 5 Skin 0.23 protein_coding synonymous_variant LOW 474G>A Leu158Leu
M0060735 ILEGKAFM_00013 15482 5 Skin 0.23 protein_coding synonymous_variant LOW 441T>G Leu147Leu
M0060736 ILEGKAFM_00013 15484 5 Skin 0.23 protein_coding missense_variant MODERATE 439C>T Leu147Phe
M0060737 ILEGKAFM_00013 15488 5 Skin 0.23 protein_coding synonymous_variant LOW 435T>C Val145Val
M0060738 ILEGKAFM_00013 15489 5 Skin 0.23 protein_coding missense_variant MODERATE 434T>C Val145Ala
M0060739 ILEGKAFM_00013 15490 5 Skin 0.23 protein_coding missense_variant MODERATE 433G>A Val145Ile
M0060740 ILEGKAFM_00013 15494 5 Skin 0.23 protein_coding synonymous_variant LOW 429T>C Asp143Asp
M0060741 ILEGKAFM_00013 15496 5 Skin 0.23 protein_coding missense_variant MODERATE 427G>C Asp143His
M0060742 ILEGKAFM_00013 15497 5 Skin 0.23 protein_coding synonymous_variant LOW 426G>C Pro142Pro
M0060743 ILEGKAFM_00013 15518 5 Skin 0.23 protein_coding synonymous_variant LOW 405A>G Ala135Ala
M0060744 ILEGKAFM_00013 15650 4 Skin 0.18 protein_coding synonymous_variant LOW 273C>G Gly91Gly
M0060745 ILEGKAFM_00013 15653 4 Skin 0.18 protein_coding synonymous_variant LOW 270T>C Phe90Phe
M0060746 ILEGKAFM_00013 15662 4 Skin 0.18 protein_coding synonymous_variant LOW 261A>G Val87Val
M0060747 ILEGKAFM_00013 15667 4 Skin 0.18 protein_coding synonymous_variant LOW 256C>T Leu86Leu
M0060748 ILEGKAFM_00013 15668 4 Skin 0.18 protein_coding synonymous_variant LOW 255C>G Leu85Leu
M0060749 ILEGKAFM_00013 15719 4 Skin 0.18 protein_coding synonymous_variant LOW 204T>C Pro68Pro
M0060750 ILEGKAFM_00010 9856 3 Skin 0.14 protein_coding synonymous_variant LOW 643T>C Leu215Leu
M0060751 ILEGKAFM_00010 9857 3 Skin 0.14 protein_coding missense_variant MODERATE 642C>G Ser214Arg
M0060752 ILEGKAFM_00010 9858 3 Skin 0.14 protein_coding missense_variant MODERATE 641G>C Ser214Thr
M0060753 ILEGKAFM_00010 9859 3 Skin 0.14 protein_coding missense_variant MODERATE 640A>G Ser214Gly
M0060754 ILEGKAFM_00010 9860 3 Skin 0.14 protein_coding synonymous_variant LOW 639G>A Leu213Leu
M0060755 ILEGKAFM_00010 9863 3 Skin 0.14 protein_coding synonymous_variant LOW 636T>C Asn212Asn
M0060756 ILEGKAFM_00010 9902 3 Skin 0.14 protein_coding synonymous_variant LOW 597T>C Gly199Gly
M0060757 ILEGKAFM_00010 10330 3 Skin 0.14 protein_coding missense_variant MODERATE 169T>A Leu57Met
M0060758 ILEGKAFM_00010 10358 3 Skin 0.14 protein_coding synonymous_variant LOW 141G>A Leu47Leu
M0060759 ILEGKAFM_00010 10361 3 Skin 0.14 protein_coding synonymous_variant LOW 138G>C Pro46Pro
M0060760 ILEGKAFM_00010 10418 3 Skin 0.14 protein_coding synonymous_variant LOW 81G>T Leu27Leu
M0060761 ILEGKAFM_00010 10427 3 Skin 0.14 protein_coding synonymous_variant LOW 72T>C Ser24Ser
M0060762 ILEGKAFM_00010 10429 3 Skin 0.14 protein_coding missense_variant MODERATE 70T>C Ser24Pro
M0060763 ILEGKAFM_00010 10451 3 Skin 0.14 protein_coding synonymous_variant LOW 48A>C Pro16Pro
M0060764 ILEGKAFM_00010 10454 3 Skin 0.14 protein_coding synonymous_variant LOW 45C>T His15His
M0060765 ILEGKAFM_00014 15923 3 Skin 0.14 protein_coding splice_region_variant&stop_retained_variant LOW 417G>A Ter139Ter
M0060766 ILEGKAFM_00014 15934 3 Skin 0.14 protein_coding missense_variant MODERATE 406A>G Thr136Ala
M0060767 ILEGKAFM_00014 16016 3 Skin 0.14 protein_coding synonymous_variant LOW 324G>T Gly108Gly
M0060768 ILEGKAFM_00014 16019 3 Skin 0.14 protein_coding synonymous_variant LOW 321C>G Gly107Gly
M0060769 ILEGKAFM_00014 16020 3 Skin 0.14 protein_coding missense_variant MODERATE 320G>A Gly107Asp
M0060770 ILEGKAFM_00014 16021 3 Skin 0.14 protein_coding missense_variant MODERATE 319G>C Gly107Arg
M0060771 ILEGKAFM_00014 16025 3 Skin 0.14 protein_coding synonymous_variant LOW 315A>C Gly105Gly
M0060772 ILEGKAFM_00014 16028 3 Skin 0.14 protein_coding synonymous_variant LOW 312C>T His104His
M0060773 ILEGKAFM_00014 16038 3 Skin 0.14 protein_coding missense_variant MODERATE 302T>C Val101Ala
M0060774 ILEGKAFM_00014 16052 3 Skin 0.14 protein_coding synonymous_variant LOW 288G>A Ser96Ser
M0060775 ILEGKAFM_00014 16055 3 Skin 0.14 protein_coding synonymous_variant LOW 285A>G Val95Val
M0060776 ILEGKAFM_00014 16076 3 Skin 0.14 protein_coding synonymous_variant LOW 264A>G Val88Val
M0060777 ILEGKAFM_00015 16473 4 Skin 0.18 protein_coding synonymous_variant LOW 6G>A Ser2Ser
M0060778 ILEGKAFM_00016 17494 5 Skin 0.23 protein_coding synonymous_variant LOW 807C>T Gly269Gly
M0060779 ILEGKAFM_00016 17521 5 Skin 0.23 protein_coding synonymous_variant LOW 834G>A Pro278Pro
M0060780 ILEGKAFM_00016 17560 5 Skin 0.23 protein_coding synonymous_variant LOW 873C>T Ser291Ser
M0060781 ILEGKAFM_00016 17563 5 Skin 0.23 protein_coding synonymous_variant LOW 876G>C Ala292Ala
M0060782 ILEGKAFM_00016 17567 5 Skin 0.23 protein_coding missense_variant MODERATE 880A>C Ile294Leu
M0060783 ILEGKAFM_00016 17617 5 Skin 0.23 protein_coding synonymous_variant LOW 930C>T Leu310Leu
M0060784 ILEGKAFM_00016 17641 5 Skin 0.23 protein_coding synonymous_variant LOW 954C>T Ala318Ala
M0060785 ILEGKAFM_00016 17752 5 Skin 0.23 protein_coding synonymous_variant LOW 1065G>C Thr355Thr
M0060786 ILEGKAFM_00016 17775 5 Skin 0.23 protein_coding missense_variant MODERATE 1088G>C Ser363Thr
M0060787 ILEGKAFM_00016 17824 5 Skin 0.23 protein_coding synonymous_variant LOW 1137G>C Val379Val
M0060788 ILEGKAFM_00016 17839 5 Skin 0.23 protein_coding synonymous_variant LOW 1152C>T Gly384Gly
M0060789 ILEGKAFM_00016 17857 5 Skin 0.23 protein_coding synonymous_variant LOW 1170T>G Val390Val
M0060790 ILEGKAFM_00016 17884 5 Skin 0.23 protein_coding synonymous_variant LOW 1197G>A Ala399Ala
M0060791 ILEGKAFM_00016 17911 5 Skin 0.23 protein_coding synonymous_variant LOW 1224T>G Ala408Ala
M0060792 ILEGKAFM_00016 17920 5 Skin 0.23 protein_coding synonymous_variant LOW 1233A>G Arg411Arg
M0060793 ILEGKAFM_00016 17932 4 Skin 0.18 protein_coding synonymous_variant LOW 1245G>T Gly415Gly
M0060794 ILEGKAFM_00016 17941 4 Skin 0.18 protein_coding synonymous_variant LOW 1254C>G Thr418Thr
M0060795 ILEGKAFM_00016 17942 4 Skin 0.18 protein_coding missense_variant MODERATE 1255A>G Ile419Val
M0060796 ILEGKAFM_00016 17944 4 Skin 0.18 protein_coding synonymous_variant LOW 1257T>C Ile419Ile
M0060797 ILEGKAFM_00016 17953 4 Skin 0.18 protein_coding synonymous_variant LOW 1266T>C Ile422Ile
M0060798 ILEGKAFM_00016 17965 4 Skin 0.18 protein_coding synonymous_variant LOW 1278C>T Phe426Phe
M0060799 ILEGKAFM_00016 17977 4 Skin 0.18 protein_coding synonymous_variant LOW 1290T>C Phe430Phe
M0060800 ILEGKAFM_00016 17980 4 Skin 0.18 protein_coding synonymous_variant LOW 1293G>A Ala431Ala
M0060801 ILEGKAFM_00016 17983 4 Skin 0.18 protein_coding synonymous_variant LOW 1296C>G Gly432Gly
M0060802 ILEGKAFM_00016 17989 4 Skin 0.18 protein_coding synonymous_variant LOW 1302G>C Ser434Ser
M0060803 ILEGKAFM_00016 18040 5 Skin 0.23 protein_coding synonymous_variant LOW 1353G>C Gly451Gly
M0060804 ILEGKAFM_00016 18064 5 Skin 0.23 protein_coding synonymous_variant LOW 1377G>C Ala459Ala
M0060805 ILEGKAFM_00016 18067 5 Skin 0.23 protein_coding synonymous_variant LOW 1380T>C Thr460Thr
M0060806 ILEGKAFM_00016 18070 5 Skin 0.23 protein_coding synonymous_variant LOW 1383G>T Arg461Arg
M0060807 ILEGKAFM_00016 18076 5 Skin 0.23 protein_coding synonymous_variant LOW 1389C>G Leu463Leu
M0060808 ILEGKAFM_00016 18079 5 Skin 0.23 protein_coding synonymous_variant LOW 1392C>A Thr464Thr
M0060809 ILEGKAFM_00016 18080 5 Skin 0.23 protein_coding missense_variant MODERATE 1393C>G Leu465Val
M0060810 ILEGKAFM_00016 18085 5 Skin 0.23 protein_coding synonymous_variant LOW 1398C>T Val466Val
M0060811 ILEGKAFM_00016 18091 5 Skin 0.23 protein_coding synonymous_variant LOW 1404C>T Thr468Thr
M0060812 ILEGKAFM_00016 18157 5 Skin 0.23 protein_coding synonymous_variant LOW 1470C>T Ala490Ala
M0060813 ILEGKAFM_00016 18289 5 Skin 0.23 protein_coding synonymous_variant LOW 1602T>G Thr534Thr
M0060814 ILEGKAFM_00016 18343 4 Skin 0.18 protein_coding synonymous_variant LOW 1656C>T Ile552Ile
M0060815 ILEGKAFM_00016 18379 4 Skin 0.18 protein_coding synonymous_variant LOW 1692C>T Ser564Ser
M0060816 ILEGKAFM_00016 18416 4 Skin 0.18 protein_coding missense_variant MODERATE 1729A>T Thr577Ser
M0060817 ILEGKAFM_00016 18529 4 Skin 0.18 protein_coding synonymous_variant LOW 1842A>G Val614Val
M0060818 ILEGKAFM_00016 18559 4 Skin 0.18 protein_coding synonymous_variant LOW 1872A>G Glu624Glu
M0060819 ILEGKAFM_00016 18580 4 Skin 0.18 protein_coding synonymous_variant LOW 1893A>G Val631Val
M0060820 ILEGKAFM_00016 18583 4 Skin 0.18 protein_coding synonymous_variant LOW 1896C>T Asp632Asp
M0060821 ILEGKAFM_00016 18589 4 Skin 0.18 protein_coding synonymous_variant LOW 1902T>C Arg634Arg
M0060822 ILEGKAFM_00016 18598 4 Skin 0.18 protein_coding synonymous_variant LOW 1911T>C Ser637Ser
M0060823 ILEGKAFM_00016 18601 4 Skin 0.18 protein_coding synonymous_variant LOW 1914C>T Asp638Asp
M0060824 ILEGKAFM_00016 18619 4 Skin 0.18 protein_coding synonymous_variant LOW 1932G>A Gln644Gln
M0060825 ILEGKAFM_00016 18637 4 Skin 0.18 protein_coding synonymous_variant LOW 1950T>C Val650Val
M0060826 ILEGKAFM_00016 18685 4 Skin 0.18 protein_coding synonymous_variant LOW 1998G>A Thr666Thr
M0060827 ILEGKAFM_00016 18686 4 Skin 0.18 protein_coding synonymous_variant LOW 1999C>T Leu667Leu
M0060828 ILEGKAFM_00016 18726 3 Skin 0.14 protein_coding missense_variant MODERATE 2039A>C Asn680Thr
M0060829 ILEGKAFM_00016 18739 3 Skin 0.14 protein_coding synonymous_variant LOW 2052C>T Ile684Ile
M0060830 ILEGKAFM_00012 18922 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4441A>G None
M0060831 ILEGKAFM_00012 18941 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4460C>T None
M0060832 ILEGKAFM_00012 18947 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4466G>A None
M0060833 ILEGKAFM_00012 18948 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4467G>A None
M0060834 ILEGKAFM_00012 18949 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4468T>C None
M0060835 ILEGKAFM_00012 18951 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4470T>C None
M0060836 ILEGKAFM_00012 18952 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4471T>A None
M0060837 ILEGKAFM_00012 18958 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4477C>T None
M0060838 ILEGKAFM_00012 18959 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4478G>A None
M0060839 ILEGKAFM_00012 18960 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4479G>A None
M0060840 ILEGKAFM_00012 18991 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4510A>G None
M0060841 ILEGKAFM_00014 21232 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4893G>A None
M0060842 ILEGKAFM_00014 21269 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4930C>T None
M0060843 ILEGKAFM_00014 21301 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4962T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term