Annotation Categories of the Plasmid Cluster
Summary of the plasmid cluster
Basic Information about the Plasmid Cluster
Cluster Information |
Plasmid Cluster ID |
C2804 |
Reference Plasmid |
DP1806001340_bin.2__NODE_1_length_22852_cov_5.633894 |
Reference Plasmid Size |
22852 |
Reference Plasmid GC Content |
0.62 |
Reference Plasmid Mobility Type |
non-mobilizable |
Mutation sites in the plasmid cluster
The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..
mutid |
gname |
pos |
count |
tissue |
frequnt |
biotype |
consequence |
impact |
nucchange |
aachange |
M0060605 |
ILEGKAFM_00012 |
13486 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
996C>T |
Ala332Ala |
M0060606 |
ILEGKAFM_00012 |
13489 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
993T>C |
Leu331Leu |
M0060607 |
ILEGKAFM_00012 |
13507 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
975T>C |
Gly325Gly |
M0060608 |
ILEGKAFM_00012 |
13564 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
918A>G |
Lys306Lys |
M0060609 |
ILEGKAFM_00012 |
13582 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
900T>C |
Asp300Asp |
M0060610 |
ILEGKAFM_00012 |
13588 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
894T>C |
Asp298Asp |
M0060611 |
ILEGKAFM_00012 |
13591 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
891T>C |
Gly297Gly |
M0060612 |
ILEGKAFM_00012 |
13603 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
879A>G |
Val293Val |
M0060613 |
ILEGKAFM_00012 |
13666 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
816T>C |
Ile272Ile |
M0060614 |
ILEGKAFM_00012 |
13672 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
810C>A |
Pro270Pro |
M0060615 |
ILEGKAFM_00012 |
13675 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
807G>T |
Leu269Leu |
M0060616 |
ILEGKAFM_00013 |
14720 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
1203T>C |
Ser401Ser |
M0060617 |
ILEGKAFM_00004 |
3450 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2472G>A |
Arg824Arg |
M0060618 |
ILEGKAFM_00004 |
3560 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
2362A>T |
Met788Leu |
M0060619 |
ILEGKAFM_00004 |
3561 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2361C>T |
Asn787Asn |
M0060620 |
ILEGKAFM_00004 |
3563 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
2359A>C |
Asn787His |
M0060621 |
ILEGKAFM_00004 |
3570 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2352C>A |
Arg784Arg |
M0060622 |
ILEGKAFM_00004 |
3571 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
2351G>A |
Arg784His |
M0060623 |
ILEGKAFM_00004 |
3579 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2343A>G |
Glu781Glu |
M0060624 |
ILEGKAFM_00004 |
3582 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2340G>C |
Pro780Pro |
M0060625 |
ILEGKAFM_00004 |
3585 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2337T>C |
Gly779Gly |
M0060626 |
ILEGKAFM_00004 |
3606 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2316A>G |
Glu772Glu |
M0060627 |
ILEGKAFM_00004 |
3612 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2310G>A |
Gly770Gly |
M0060628 |
ILEGKAFM_00004 |
3624 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2298C>G |
Val766Val |
M0060629 |
ILEGKAFM_00004 |
3642 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2280A>C |
Gly760Gly |
M0060630 |
ILEGKAFM_00004 |
3648 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2274G>A |
Lys758Lys |
M0060631 |
ILEGKAFM_00004 |
3693 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2229C>T |
Gly743Gly |
M0060632 |
ILEGKAFM_00004 |
3708 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2214C>T |
Leu738Leu |
M0060633 |
ILEGKAFM_00004 |
3713 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
2209C>A |
Gln737Lys |
M0060634 |
ILEGKAFM_00004 |
3992 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1930T>C |
Leu644Leu |
M0060635 |
ILEGKAFM_00004 |
3995 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1927A>C |
Met643Leu |
M0060636 |
ILEGKAFM_00004 |
3998 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1924A>C |
Asn642His |
M0060637 |
ILEGKAFM_00004 |
3999 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1923C>T |
Gly641Gly |
M0060638 |
ILEGKAFM_00004 |
4000 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1922G>A |
Gly641Asp |
M0060639 |
ILEGKAFM_00004 |
4004 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1918T>C |
Leu640Leu |
M0060640 |
ILEGKAFM_00004 |
4041 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1881C>T |
Leu627Leu |
M0060641 |
ILEGKAFM_00004 |
4080 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1842T>C |
Ala614Ala |
M0060642 |
ILEGKAFM_00004 |
4100 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1822C>T |
Leu608Leu |
M0060643 |
ILEGKAFM_00004 |
4103 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1819T>C |
Leu607Leu |
M0060644 |
ILEGKAFM_00004 |
4105 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1817C>A |
Ala606Glu |
M0060645 |
ILEGKAFM_00004 |
4107 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1815G>A |
Glu605Glu |
M0060646 |
ILEGKAFM_00004 |
4110 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1812A>G |
Ala604Ala |
M0060647 |
ILEGKAFM_00004 |
4130 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1792C>T |
Leu598Leu |
M0060648 |
ILEGKAFM_00004 |
4158 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1764C>T |
Thr588Thr |
M0060649 |
ILEGKAFM_00004 |
4182 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1740A>G |
Ala580Ala |
M0060650 |
ILEGKAFM_00004 |
4184 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1738G>T |
Ala580Ser |
M0060651 |
ILEGKAFM_00004 |
4193 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1729T>A |
Ser577Thr |
M0060652 |
ILEGKAFM_00004 |
4215 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1707G>A |
Leu569Leu |
M0060653 |
ILEGKAFM_00004 |
4239 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1683G>A |
Glu561Glu |
M0060654 |
ILEGKAFM_00004 |
4278 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1644A>G |
Ala548Ala |
M0060655 |
ILEGKAFM_00004 |
4307 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1615C>A |
Arg539Arg |
M0060656 |
ILEGKAFM_00004 |
4335 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1587A>G |
Val529Val |
M0060657 |
ILEGKAFM_00004 |
4388 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1534G>A |
Val512Ile |
M0060658 |
ILEGKAFM_00004 |
4392 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
1530T>C |
Ala510Ala |
M0060659 |
ILEGKAFM_00004 |
4767 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1155A>G |
Thr385Thr |
M0060660 |
ILEGKAFM_00004 |
4770 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1152A>C |
Arg384Arg |
M0060661 |
ILEGKAFM_00004 |
4784 |
4 |
Skin |
0.18 |
protein_coding |
missense_variant |
MODERATE |
1138A>G |
Ile380Val |
M0060662 |
ILEGKAFM_00004 |
4917 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1005A>G |
Val335Val |
M0060663 |
ILEGKAFM_00004 |
4945 |
4 |
Skin |
0.18 |
protein_coding |
missense_variant |
MODERATE |
977T>C |
Met326Thr |
M0060664 |
ILEGKAFM_00004 |
4956 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
966G>C |
Gly322Gly |
M0060665 |
ILEGKAFM_00004 |
4980 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
942T>C |
Gly314Gly |
M0060666 |
ILEGKAFM_00004 |
4995 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
927T>C |
Tyr309Tyr |
M0060667 |
ILEGKAFM_00004 |
5075 |
4 |
Skin |
0.18 |
protein_coding |
missense_variant |
MODERATE |
847G>T |
Ala283Ser |
M0060668 |
ILEGKAFM_00005 |
6069 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
1298G>A |
Arg433Gln |
M0060669 |
ILEGKAFM_00005 |
6230 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1137T>C |
Thr379Thr |
M0060670 |
ILEGKAFM_00009 |
9786 |
7 |
Skin |
0.32 |
protein_coding |
missense_variant |
MODERATE |
50T>C |
Val17Ala |
M0060671 |
ILEGKAFM_00009 |
9794 |
7 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
42T>C |
Ala14Ala |
M0060672 |
ILEGKAFM_00009 |
9821 |
7 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
15C>A |
Ile5Ile |
M0060673 |
ILEGKAFM_00004 |
9837 |
7 |
Skin |
0.32 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3916C>T |
None |
M0060674 |
ILEGKAFM_00010 |
10010 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
489G>A |
Ser163Ser |
M0060675 |
ILEGKAFM_00010 |
10031 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
468T>C |
Ser156Ser |
M0060676 |
ILEGKAFM_00010 |
10052 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
447T>C |
Asp149Asp |
M0060677 |
ILEGKAFM_00010 |
10067 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
432G>A |
Thr144Thr |
M0060678 |
ILEGKAFM_00010 |
10074 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
425C>A |
Ala142Asp |
M0060679 |
ILEGKAFM_00010 |
10081 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
418T>C |
Leu140Leu |
M0060680 |
ILEGKAFM_00010 |
10085 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
414C>T |
Asn138Asn |
M0060681 |
ILEGKAFM_00010 |
10092 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
407A>G |
Gln136Arg |
M0060682 |
ILEGKAFM_00010 |
10093 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
406C>A |
Gln136Lys |
M0060683 |
ILEGKAFM_00010 |
10103 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
396G>T |
Thr132Thr |
M0060684 |
ILEGKAFM_00010 |
10105 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
394A>G |
Thr132Ala |
M0060685 |
ILEGKAFM_00010 |
10106 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
393G>C |
Val131Val |
M0060686 |
ILEGKAFM_00010 |
10118 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
381G>A |
Val127Val |
M0060687 |
ILEGKAFM_00010 |
10127 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
372A>G |
Arg124Arg |
M0060688 |
ILEGKAFM_00010 |
10139 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
360C>T |
Asn120Asn |
M0060689 |
ILEGKAFM_00010 |
10169 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
330C>T |
Asn110Asn |
M0060690 |
ILEGKAFM_00010 |
10178 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
321T>C |
Asn107Asn |
M0060691 |
ILEGKAFM_00010 |
10199 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
300C>T |
Gly100Gly |
M0060692 |
ILEGKAFM_00010 |
10211 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
288C>T |
Asn96Asn |
M0060693 |
ILEGKAFM_00010 |
10223 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
276A>C |
Pro92Pro |
M0060694 |
ILEGKAFM_00011 |
10723 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1479G>A |
Leu493Leu |
M0060695 |
ILEGKAFM_00011 |
10972 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1230A>G |
Lys410Lys |
M0060696 |
ILEGKAFM_00011 |
10981 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1221C>T |
Phe407Phe |
M0060697 |
ILEGKAFM_00011 |
10987 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1215G>C |
Pro405Pro |
M0060698 |
ILEGKAFM_00011 |
11008 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1194G>C |
Gly398Gly |
M0060699 |
ILEGKAFM_00011 |
11038 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1164G>A |
Gln388Gln |
M0060700 |
ILEGKAFM_00011 |
11065 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1137A>G |
Lys379Lys |
M0060701 |
ILEGKAFM_00011 |
11074 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1128T>C |
Phe376Phe |
M0060702 |
ILEGKAFM_00011 |
11095 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1107A>G |
Gln369Gln |
M0060703 |
ILEGKAFM_00011 |
11098 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1104G>C |
Leu368Leu |
M0060704 |
ILEGKAFM_00011 |
11107 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1095G>A |
Val365Val |
M0060705 |
ILEGKAFM_00011 |
11110 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1092T>C |
Phe364Phe |
M0060706 |
ILEGKAFM_00011 |
11129 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
1073A>T |
Tyr358Phe |
M0060707 |
ILEGKAFM_00011 |
11131 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1071C>A |
Ser357Ser |
M0060708 |
ILEGKAFM_00011 |
11143 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1059T>C |
Ser353Ser |
M0060709 |
ILEGKAFM_00011 |
11145 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
1057T>G |
Ser353Ala |
M0060710 |
ILEGKAFM_00011 |
11148 |
8 |
Skin |
0.36 |
protein_coding |
missense_variant |
MODERATE |
1054G>A |
Asp352Asn |
M0060711 |
ILEGKAFM_00011 |
11161 |
8 |
Skin |
0.36 |
protein_coding |
synonymous_variant |
LOW |
1041C>A |
Thr347Thr |
M0060712 |
ILEGKAFM_00006 |
7616 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
18T>C |
Thr6Thr |
M0060713 |
ILEGKAFM_00006 |
7757 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
159G>T |
Arg53Arg |
M0060714 |
ILEGKAFM_00006 |
7772 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
174C>G |
Ala58Ala |
M0060715 |
ILEGKAFM_00006 |
7826 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
228C>T |
Arg76Arg |
M0060716 |
ILEGKAFM_00007 |
7887 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
59G>A |
Gly20Glu |
M0060717 |
ILEGKAFM_00007 |
7933 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
105T>C |
Asn35Asn |
M0060718 |
ILEGKAFM_00007 |
7934 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
106C>T |
Leu36Leu |
M0060719 |
ILEGKAFM_00007 |
7936 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
108G>C |
Leu36Leu |
M0060720 |
ILEGKAFM_00007 |
7939 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
111T>C |
Ala37Ala |
M0060721 |
ILEGKAFM_00012 |
14236 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
246T>C |
Asn82Asn |
M0060722 |
ILEGKAFM_00012 |
14242 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
240C>T |
Phe80Phe |
M0060723 |
ILEGKAFM_00012 |
14248 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
234A>C |
Val78Val |
M0060724 |
ILEGKAFM_00012 |
14251 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
231G>C |
Thr77Thr |
M0060725 |
ILEGKAFM_00012 |
14254 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
228A>C |
Leu76Leu |
M0060726 |
ILEGKAFM_00012 |
14272 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
210A>G |
Val70Val |
M0060727 |
ILEGKAFM_00012 |
14284 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
198C>T |
Tyr66Tyr |
M0060728 |
ILEGKAFM_00012 |
14347 |
6 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
135T>C |
Val45Val |
M0060729 |
ILEGKAFM_00012 |
14470 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
12C>T |
Ala4Ala |
M0060730 |
ILEGKAFM_00009 |
14485 |
5 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4650C>T |
None |
M0060731 |
ILEGKAFM_00009 |
14492 |
5 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4657T>C |
None |
M0060732 |
ILEGKAFM_00009 |
14493 |
5 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4658C>T |
None |
M0060733 |
ILEGKAFM_00009 |
14494 |
5 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4659T>C |
None |
M0060734 |
ILEGKAFM_00013 |
15449 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
474G>A |
Leu158Leu |
M0060735 |
ILEGKAFM_00013 |
15482 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
441T>G |
Leu147Leu |
M0060736 |
ILEGKAFM_00013 |
15484 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
439C>T |
Leu147Phe |
M0060737 |
ILEGKAFM_00013 |
15488 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
435T>C |
Val145Val |
M0060738 |
ILEGKAFM_00013 |
15489 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
434T>C |
Val145Ala |
M0060739 |
ILEGKAFM_00013 |
15490 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
433G>A |
Val145Ile |
M0060740 |
ILEGKAFM_00013 |
15494 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
429T>C |
Asp143Asp |
M0060741 |
ILEGKAFM_00013 |
15496 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
427G>C |
Asp143His |
M0060742 |
ILEGKAFM_00013 |
15497 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
426G>C |
Pro142Pro |
M0060743 |
ILEGKAFM_00013 |
15518 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
405A>G |
Ala135Ala |
M0060744 |
ILEGKAFM_00013 |
15650 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
273C>G |
Gly91Gly |
M0060745 |
ILEGKAFM_00013 |
15653 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
270T>C |
Phe90Phe |
M0060746 |
ILEGKAFM_00013 |
15662 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
261A>G |
Val87Val |
M0060747 |
ILEGKAFM_00013 |
15667 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
256C>T |
Leu86Leu |
M0060748 |
ILEGKAFM_00013 |
15668 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
255C>G |
Leu85Leu |
M0060749 |
ILEGKAFM_00013 |
15719 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
204T>C |
Pro68Pro |
M0060750 |
ILEGKAFM_00010 |
9856 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
643T>C |
Leu215Leu |
M0060751 |
ILEGKAFM_00010 |
9857 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
642C>G |
Ser214Arg |
M0060752 |
ILEGKAFM_00010 |
9858 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
641G>C |
Ser214Thr |
M0060753 |
ILEGKAFM_00010 |
9859 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
640A>G |
Ser214Gly |
M0060754 |
ILEGKAFM_00010 |
9860 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
639G>A |
Leu213Leu |
M0060755 |
ILEGKAFM_00010 |
9863 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
636T>C |
Asn212Asn |
M0060756 |
ILEGKAFM_00010 |
9902 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
597T>C |
Gly199Gly |
M0060757 |
ILEGKAFM_00010 |
10330 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
169T>A |
Leu57Met |
M0060758 |
ILEGKAFM_00010 |
10358 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
141G>A |
Leu47Leu |
M0060759 |
ILEGKAFM_00010 |
10361 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
138G>C |
Pro46Pro |
M0060760 |
ILEGKAFM_00010 |
10418 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
81G>T |
Leu27Leu |
M0060761 |
ILEGKAFM_00010 |
10427 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
72T>C |
Ser24Ser |
M0060762 |
ILEGKAFM_00010 |
10429 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
70T>C |
Ser24Pro |
M0060763 |
ILEGKAFM_00010 |
10451 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
48A>C |
Pro16Pro |
M0060764 |
ILEGKAFM_00010 |
10454 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
45C>T |
His15His |
M0060765 |
ILEGKAFM_00014 |
15923 |
3 |
Skin |
0.14 |
protein_coding |
splice_region_variant&stop_retained_variant |
LOW |
417G>A |
Ter139Ter |
M0060766 |
ILEGKAFM_00014 |
15934 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
406A>G |
Thr136Ala |
M0060767 |
ILEGKAFM_00014 |
16016 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
324G>T |
Gly108Gly |
M0060768 |
ILEGKAFM_00014 |
16019 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
321C>G |
Gly107Gly |
M0060769 |
ILEGKAFM_00014 |
16020 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
320G>A |
Gly107Asp |
M0060770 |
ILEGKAFM_00014 |
16021 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
319G>C |
Gly107Arg |
M0060771 |
ILEGKAFM_00014 |
16025 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
315A>C |
Gly105Gly |
M0060772 |
ILEGKAFM_00014 |
16028 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
312C>T |
His104His |
M0060773 |
ILEGKAFM_00014 |
16038 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
302T>C |
Val101Ala |
M0060774 |
ILEGKAFM_00014 |
16052 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
288G>A |
Ser96Ser |
M0060775 |
ILEGKAFM_00014 |
16055 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
285A>G |
Val95Val |
M0060776 |
ILEGKAFM_00014 |
16076 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
264A>G |
Val88Val |
M0060777 |
ILEGKAFM_00015 |
16473 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
6G>A |
Ser2Ser |
M0060778 |
ILEGKAFM_00016 |
17494 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
807C>T |
Gly269Gly |
M0060779 |
ILEGKAFM_00016 |
17521 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
834G>A |
Pro278Pro |
M0060780 |
ILEGKAFM_00016 |
17560 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
873C>T |
Ser291Ser |
M0060781 |
ILEGKAFM_00016 |
17563 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
876G>C |
Ala292Ala |
M0060782 |
ILEGKAFM_00016 |
17567 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
880A>C |
Ile294Leu |
M0060783 |
ILEGKAFM_00016 |
17617 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
930C>T |
Leu310Leu |
M0060784 |
ILEGKAFM_00016 |
17641 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
954C>T |
Ala318Ala |
M0060785 |
ILEGKAFM_00016 |
17752 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1065G>C |
Thr355Thr |
M0060786 |
ILEGKAFM_00016 |
17775 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
1088G>C |
Ser363Thr |
M0060787 |
ILEGKAFM_00016 |
17824 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1137G>C |
Val379Val |
M0060788 |
ILEGKAFM_00016 |
17839 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1152C>T |
Gly384Gly |
M0060789 |
ILEGKAFM_00016 |
17857 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1170T>G |
Val390Val |
M0060790 |
ILEGKAFM_00016 |
17884 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1197G>A |
Ala399Ala |
M0060791 |
ILEGKAFM_00016 |
17911 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1224T>G |
Ala408Ala |
M0060792 |
ILEGKAFM_00016 |
17920 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1233A>G |
Arg411Arg |
M0060793 |
ILEGKAFM_00016 |
17932 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1245G>T |
Gly415Gly |
M0060794 |
ILEGKAFM_00016 |
17941 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1254C>G |
Thr418Thr |
M0060795 |
ILEGKAFM_00016 |
17942 |
4 |
Skin |
0.18 |
protein_coding |
missense_variant |
MODERATE |
1255A>G |
Ile419Val |
M0060796 |
ILEGKAFM_00016 |
17944 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1257T>C |
Ile419Ile |
M0060797 |
ILEGKAFM_00016 |
17953 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1266T>C |
Ile422Ile |
M0060798 |
ILEGKAFM_00016 |
17965 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1278C>T |
Phe426Phe |
M0060799 |
ILEGKAFM_00016 |
17977 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1290T>C |
Phe430Phe |
M0060800 |
ILEGKAFM_00016 |
17980 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1293G>A |
Ala431Ala |
M0060801 |
ILEGKAFM_00016 |
17983 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1296C>G |
Gly432Gly |
M0060802 |
ILEGKAFM_00016 |
17989 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1302G>C |
Ser434Ser |
M0060803 |
ILEGKAFM_00016 |
18040 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1353G>C |
Gly451Gly |
M0060804 |
ILEGKAFM_00016 |
18064 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1377G>C |
Ala459Ala |
M0060805 |
ILEGKAFM_00016 |
18067 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1380T>C |
Thr460Thr |
M0060806 |
ILEGKAFM_00016 |
18070 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1383G>T |
Arg461Arg |
M0060807 |
ILEGKAFM_00016 |
18076 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1389C>G |
Leu463Leu |
M0060808 |
ILEGKAFM_00016 |
18079 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1392C>A |
Thr464Thr |
M0060809 |
ILEGKAFM_00016 |
18080 |
5 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
1393C>G |
Leu465Val |
M0060810 |
ILEGKAFM_00016 |
18085 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1398C>T |
Val466Val |
M0060811 |
ILEGKAFM_00016 |
18091 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1404C>T |
Thr468Thr |
M0060812 |
ILEGKAFM_00016 |
18157 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1470C>T |
Ala490Ala |
M0060813 |
ILEGKAFM_00016 |
18289 |
5 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1602T>G |
Thr534Thr |
M0060814 |
ILEGKAFM_00016 |
18343 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1656C>T |
Ile552Ile |
M0060815 |
ILEGKAFM_00016 |
18379 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1692C>T |
Ser564Ser |
M0060816 |
ILEGKAFM_00016 |
18416 |
4 |
Skin |
0.18 |
protein_coding |
missense_variant |
MODERATE |
1729A>T |
Thr577Ser |
M0060817 |
ILEGKAFM_00016 |
18529 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1842A>G |
Val614Val |
M0060818 |
ILEGKAFM_00016 |
18559 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1872A>G |
Glu624Glu |
M0060819 |
ILEGKAFM_00016 |
18580 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1893A>G |
Val631Val |
M0060820 |
ILEGKAFM_00016 |
18583 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1896C>T |
Asp632Asp |
M0060821 |
ILEGKAFM_00016 |
18589 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1902T>C |
Arg634Arg |
M0060822 |
ILEGKAFM_00016 |
18598 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1911T>C |
Ser637Ser |
M0060823 |
ILEGKAFM_00016 |
18601 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1914C>T |
Asp638Asp |
M0060824 |
ILEGKAFM_00016 |
18619 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1932G>A |
Gln644Gln |
M0060825 |
ILEGKAFM_00016 |
18637 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1950T>C |
Val650Val |
M0060826 |
ILEGKAFM_00016 |
18685 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1998G>A |
Thr666Thr |
M0060827 |
ILEGKAFM_00016 |
18686 |
4 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
1999C>T |
Leu667Leu |
M0060828 |
ILEGKAFM_00016 |
18726 |
3 |
Skin |
0.14 |
protein_coding |
missense_variant |
MODERATE |
2039A>C |
Asn680Thr |
M0060829 |
ILEGKAFM_00016 |
18739 |
3 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2052C>T |
Ile684Ile |
M0060830 |
ILEGKAFM_00012 |
18922 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4441A>G |
None |
M0060831 |
ILEGKAFM_00012 |
18941 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4460C>T |
None |
M0060832 |
ILEGKAFM_00012 |
18947 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4466G>A |
None |
M0060833 |
ILEGKAFM_00012 |
18948 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4467G>A |
None |
M0060834 |
ILEGKAFM_00012 |
18949 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4468T>C |
None |
M0060835 |
ILEGKAFM_00012 |
18951 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4470T>C |
None |
M0060836 |
ILEGKAFM_00012 |
18952 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4471T>A |
None |
M0060837 |
ILEGKAFM_00012 |
18958 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4477C>T |
None |
M0060838 |
ILEGKAFM_00012 |
18959 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4478G>A |
None |
M0060839 |
ILEGKAFM_00012 |
18960 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4479G>A |
None |
M0060840 |
ILEGKAFM_00012 |
18991 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4510A>G |
None |
M0060841 |
ILEGKAFM_00014 |
21232 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4893G>A |
None |
M0060842 |
ILEGKAFM_00014 |
21269 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4930C>T |
None |
M0060843 |
ILEGKAFM_00014 |
21301 |
3 |
Skin |
0.14 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4962T>C |
None |
Analysis of virulence factors contributing to bacterial pathogenicity
This table presents virulence factors identified within the plasmid cluster.
Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.
Gene Name |
vf_gene_id |
vf_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
vf_category |
gene_description |
condition |
Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact
This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.
Gene Name |
compound |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
group |
Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents
This table presents antimicrobial resistance genes identified within the plasmid cluster.
Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.
Gene Name |
aro_accession |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
drug_class |
amr_gene_family |
resistance_mechanism |
Analysis of pathogenicity genes to explore pathogen-host interactions
This table presents host pathogen-host interactions within the plasmid cluster.
Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.
Gene Name |
phi_molconn_id |
host gene_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
host_descripton |
disease_name |
function |
phenotype_of_mutant |
Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation
This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.
Gene Name |
cazy_id |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification
This table presents transport proteins within the plasmid cluster.
Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.
Gene Name |
tcid |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
class_field |
class_term |
subclass |
subclass_term |
family |
family_term |