Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2806
  Reference Plasmid   DP1806001340_bin.2__NODE_54_length_8304_cov_1.715661
  Reference Plasmid Size   8304
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0060844 FBLEADLC_00002 2889 3 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -99G>A None
M0060845 FBLEADLC_00004 3579 5 Skin 0.29 protein_coding synonymous_variant LOW 849G>A Glu283Glu
M0060846 FBLEADLC_00004 3582 6 Skin 0.35 protein_coding synonymous_variant LOW 846T>C Phe282Phe
M0060847 FBLEADLC_00004 3585 5 Skin 0.29 protein_coding synonymous_variant LOW 843G>A Glu281Glu
M0060848 FBLEADLC_00004 3588 6 Skin 0.35 protein_coding synonymous_variant LOW 840T>C Arg280Arg
M0060849 FBLEADLC_00004 3627 6 Skin 0.35 protein_coding synonymous_variant LOW 801C>T Ala267Ala
M0060850 FBLEADLC_00004 3633 6 Skin 0.35 protein_coding synonymous_variant LOW 795T>C Ala265Ala
M0060851 FBLEADLC_00004 4371 6 Skin 0.35 protein_coding synonymous_variant LOW 57A>G Gln19Gln
M0060852 FBLEADLC_00005 4642 7 Skin 0.41 protein_coding missense_variant MODERATE 148C>T Pro50Ser
M0060853 FBLEADLC_00005 4688 6 Skin 0.35 protein_coding missense_variant MODERATE 194T>C Met65Thr
M0060854 FBLEADLC_00005 4747 5 Skin 0.29 protein_coding missense_variant MODERATE 253C>G Pro85Ala
M0060855 FBLEADLC_00005 5010 3 Skin 0.18 protein_coding synonymous_variant LOW 516G>A Val172Val
M0060856 FBLEADLC_00005 5067 4 Skin 0.24 protein_coding synonymous_variant LOW 573C>T Val191Val
M0060857 FBLEADLC_00005 5103 8 Skin 0.47 protein_coding synonymous_variant LOW 609G>A Glu203Glu
M0060858 FBLEADLC_00005 5238 10 Skin 0.59 protein_coding synonymous_variant LOW 744G>A Ala248Ala
M0060859 FBLEADLC_00006 5376 7 Skin 0.41 protein_coding synonymous_variant LOW 106T>C Leu36Leu
M0060860 FBLEADLC_00006 5378 7 Skin 0.41 protein_coding missense_variant MODERATE 108G>C Leu36Phe
M0060861 FBLEADLC_00006 5379 7 Skin 0.41 protein_coding synonymous_variant LOW 109T>C Leu37Leu
M0060862 FBLEADLC_00006 5420 7 Skin 0.41 protein_coding synonymous_variant LOW 150T>C Pro50Pro
M0060863 FBLEADLC_00006 5490 7 Skin 0.41 protein_coding synonymous_variant LOW 220C>T Leu74Leu
M0060864 FBLEADLC_00006 5510 3 Skin 0.18 protein_coding synonymous_variant LOW 240C>A Gly80Gly
M0060865 FBLEADLC_00007 5761 3 Skin 0.18 protein_coding synonymous_variant LOW 51C>T Pro17Pro
M0060866 FBLEADLC_00007 5776 4 Skin 0.24 protein_coding synonymous_variant LOW 66G>A Gln22Gln
M0060867 FBLEADLC_00007 6104 7 Skin 0.41 protein_coding missense_variant MODERATE 394A>G Thr132Ala
M0060868 FBLEADLC_00007 6113 9 Skin 0.53 protein_coding missense_variant MODERATE 403C>G His135Asp
M0060869 FBLEADLC_00008 6705 6 Skin 0.35 protein_coding synonymous_variant LOW 153C>T Gly51Gly
M0060870 FBLEADLC_00008 6963 3 Skin 0.18 protein_coding synonymous_variant LOW 411T>C Arg137Arg
M0060871 FBLEADLC_00009 7100 5 Skin 0.29 protein_coding synonymous_variant LOW 51T>C Asp17Asp
M0060872 FBLEADLC_00009 7442 5 Skin 0.29 protein_coding synonymous_variant LOW 393C>T Ala131Ala
M0060873 FBLEADLC_00009 7728 7 Skin 0.41 protein_coding missense_variant MODERATE 679G>C Glu227Gln
M0060874 FBLEADLC_00009 7736 7 Skin 0.41 protein_coding synonymous_variant LOW 687G>A Val229Val
M0060875 FBLEADLC_00009 7739 7 Skin 0.41 protein_coding synonymous_variant LOW 690C>T Tyr230Tyr
M0060876 FBLEADLC_00009 7742 7 Skin 0.41 protein_coding synonymous_variant LOW 693C>T Arg231Arg
M0060877 FBLEADLC_00009 7745 7 Skin 0.41 protein_coding synonymous_variant LOW 696G>C Thr232Thr
M0060878 FBLEADLC_00004 7917 3 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -3490G>C None
M0060879 FBLEADLC_00004 7931 3 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -3504C>T None
M0060880 FBLEADLC_00004 7956 5 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3529G>A None
M0060881 FBLEADLC_00004 8142 7 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -3715G>C None
M0060882 FBLEADLC_00004 8157 7 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -3730T>G None
M0060883 FBLEADLC_00005 4581 7 Skin 0.41 protein_coding synonymous_variant LOW 87C>T Gly29Gly
M0060884 FBLEADLC_00005 4584 8 Skin 0.47 protein_coding synonymous_variant LOW 90C>A Ser30Ser
M0060885 FBLEADLC_00005 4593 7 Skin 0.41 protein_coding synonymous_variant LOW 99C>T Arg33Arg
M0060886 FBLEADLC_00005 4602 9 Skin 0.53 protein_coding synonymous_variant LOW 108T>C Pro36Pro
M0060887 FBLEADLC_00005 4605 8 Skin 0.47 protein_coding missense_variant MODERATE 111A>T Glu37Asp
M0060888 FBLEADLC_00005 4675 6 Skin 0.35 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0060889 FBLEADLC_00009 7508 4 Skin 0.24 protein_coding synonymous_variant LOW 459T>A Thr153Thr
M0060890 FBLEADLC_00009 7592 9 Skin 0.53 protein_coding synonymous_variant LOW 543A>G Val181Val
M0060891 FBLEADLC_00009 7595 9 Skin 0.53 protein_coding missense_variant MODERATE 546A>C Glu182Asp
M0060892 FBLEADLC_00009 7607 9 Skin 0.53 protein_coding synonymous_variant LOW 558T>C Arg186Arg
M0060893 FBLEADLC_00009 7628 8 Skin 0.47 protein_coding synonymous_variant LOW 579C>G Thr193Thr
M0060894 FBLEADLC_00009 7830 9 Skin 0.53 protein_coding missense_variant MODERATE 781A>G Lys261Glu
M0060895 FBLEADLC_00004 8190 4 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -3763C>T None
M0060896 FBLEADLC_00004 4020 5 Skin 0.29 protein_coding synonymous_variant LOW 408G>C Gly136Gly
M0060897 FBLEADLC_00004 4023 5 Skin 0.29 protein_coding synonymous_variant LOW 405A>G Ala135Ala
M0060898 FBLEADLC_00004 4068 5 Skin 0.29 protein_coding synonymous_variant LOW 360G>C Ala120Ala
M0060899 FBLEADLC_00004 4077 6 Skin 0.35 protein_coding synonymous_variant LOW 351C>G Arg117Arg
M0060900 FBLEADLC_00004 4079 6 Skin 0.35 protein_coding missense_variant MODERATE 349C>A Arg117Ser
M0060901 FBLEADLC_00004 4086 7 Skin 0.41 protein_coding synonymous_variant LOW 342A>G Lys114Lys
M0060902 FBLEADLC_00004 4101 6 Skin 0.35 protein_coding synonymous_variant LOW 327C>T Asp109Asp
M0060903 FBLEADLC_00004 4176 7 Skin 0.41 protein_coding synonymous_variant LOW 252G>C Ala84Ala
M0060904 FBLEADLC_00004 4179 7 Skin 0.41 protein_coding synonymous_variant LOW 249G>T Ala83Ala
M0060905 FBLEADLC_00004 4182 7 Skin 0.41 protein_coding synonymous_variant LOW 246G>C Ala82Ala
M0060906 FBLEADLC_00005 5114 9 Skin 0.53 protein_coding missense_variant MODERATE 620C>G Ala207Gly
M0060907 FBLEADLC_00004 3681 3 Skin 0.18 protein_coding synonymous_variant LOW 747C>T Gly249Gly
M0060908 FBLEADLC_00004 4113 6 Skin 0.35 protein_coding synonymous_variant LOW 315A>G Lys105Lys
M0060909 FBLEADLC_00004 4116 6 Skin 0.35 protein_coding synonymous_variant LOW 312G>C Leu104Leu
M0060910 FBLEADLC_00007 5806 8 Skin 0.47 protein_coding synonymous_variant LOW 96C>G Leu32Leu
M0060911 FBLEADLC_00007 6452 3 Skin 0.18 protein_coding synonymous_variant LOW 742T>C Leu248Leu
M0060912 FBLEADLC_00006 5500 5 Skin 0.29 protein_coding missense_variant MODERATE 230C>G Thr77Ser
M0060913 FBLEADLC_00006 5639 3 Skin 0.18 protein_coding synonymous_variant LOW 369G>A Thr123Thr
M0060914 FBLEADLC_00006 5649 5 Skin 0.29 protein_coding missense_variant MODERATE 379G>A Ala127Thr
M0060915 FBLEADLC_00006 5690 5 Skin 0.29 protein_coding synonymous_variant LOW 420C>T Arg140Arg
M0060916 FBLEADLC_00007 5845 8 Skin 0.47 protein_coding synonymous_variant LOW 135T>C Phe45Phe
M0060917 FBLEADLC_00007 5851 8 Skin 0.47 protein_coding synonymous_variant LOW 141G>C Arg47Arg
M0060918 FBLEADLC_00007 5878 8 Skin 0.47 protein_coding synonymous_variant LOW 168C>T Phe56Phe
M0060919 FBLEADLC_00009 7214 3 Skin 0.18 protein_coding synonymous_variant LOW 165T>C Thr55Thr
M0060920 FBLEADLC_00002 1920 3 Skin 0.18 protein_coding synonymous_variant LOW 871C>T Leu291Leu
M0060921 FBLEADLC_00005 5193 5 Skin 0.29 protein_coding synonymous_variant LOW 699C>T Gly233Gly
M0060922 FBLEADLC_00009 7473 3 Skin 0.18 protein_coding missense_variant MODERATE 424G>A Ala142Thr
M0060923 FBLEADLC_00009 7534 3 Skin 0.18 protein_coding missense_variant MODERATE 485A>G His162Arg
M0060924 FBLEADLC_00009 7535 3 Skin 0.18 protein_coding synonymous_variant LOW 486C>T His162His
M0060925 FBLEADLC_00009 7368 3 Skin 0.18 protein_coding missense_variant MODERATE 319G>A Ala107Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term