Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2810
  Reference Plasmid   DP1806001398_bin.1__NODE_308_length_7627_cov_0.460680
  Reference Plasmid Size   7627
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0061173 JPDAAOPO_00001 291 6 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -97G>A None
M0061174 JPDAAOPO_00001 627 7 Skin 0.37 protein_coding synonymous_variant LOW 240A>G Gln80Gln
M0061175 JPDAAOPO_00001 1135 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *22A>C None
M0061176 JPDAAOPO_00001 1213 8 Skin 0.42 protein_coding downstream_gene_variant MODIFIER *100C>T None
M0061177 JPDAAOPO_00001 1336 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *223A>G None
M0061178 JPDAAOPO_00001 1370 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *257A>G None
M0061179 JPDAAOPO_00001 1497 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *384T>A None
M0061180 JPDAAOPO_00001 1565 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *452G>C None
M0061181 JPDAAOPO_00001 1566 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *453T>C None
M0061182 JPDAAOPO_00001 1661 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *548G>A None
M0061183 JPDAAOPO_00001 1669 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *556A>G None
M0061184 JPDAAOPO_00001 1693 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *580A>G None
M0061185 JPDAAOPO_00001 1740 5 Skin 0.26 protein_coding downstream_gene_variant MODIFIER *627G>A None
M0061186 JPDAAOPO_00001 1750 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *637A>G None
M0061187 JPDAAOPO_00001 1833 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *720C>T None
M0061188 JPDAAOPO_00001 1890 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *777A>C None
M0061189 JPDAAOPO_00001 1892 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *779G>A None
M0061190 JPDAAOPO_00001 1909 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *796A>G None
M0061191 JPDAAOPO_00001 1948 9 Skin 0.47 protein_coding downstream_gene_variant MODIFIER *835A>G None
M0061192 JPDAAOPO_00001 1973 10 Skin 0.53 protein_coding downstream_gene_variant MODIFIER *860T>A None
M0061193 JPDAAOPO_00001 2024 6 Skin 0.32 protein_coding downstream_gene_variant MODIFIER *911A>G None
M0061194 JPDAAOPO_00002 2098 6 Skin 0.32 protein_coding synonymous_variant LOW 1825T>C Leu609Leu
M0061195 JPDAAOPO_00002 2108 9 Skin 0.47 protein_coding synonymous_variant LOW 1815C>T Ala605Ala
M0061196 JPDAAOPO_00002 2143 10 Skin 0.53 protein_coding missense_variant MODERATE 1780T>A Leu594Met
M0061197 JPDAAOPO_00002 2466 4 Skin 0.21 protein_coding missense_variant MODERATE 1457G>A Arg486Gln
M0061198 JPDAAOPO_00002 2480 7 Skin 0.37 protein_coding synonymous_variant LOW 1443C>T Asn481Asn
M0061199 JPDAAOPO_00002 2564 10 Skin 0.53 protein_coding synonymous_variant LOW 1359C>T Arg453Arg
M0061200 JPDAAOPO_00002 2648 12 Skin 0.63 protein_coding synonymous_variant LOW 1275G>A Ala425Ala
M0061201 JPDAAOPO_00002 2660 9 Skin 0.47 protein_coding synonymous_variant LOW 1263G>A Gly421Gly
M0061202 JPDAAOPO_00002 2741 12 Skin 0.63 protein_coding synonymous_variant LOW 1182T>C Ser394Ser
M0061203 JPDAAOPO_00002 2770 12 Skin 0.63 protein_coding missense_variant MODERATE 1153T>C Ser385Pro
M0061204 JPDAAOPO_00002 2792 10 Skin 0.53 protein_coding synonymous_variant LOW 1131C>T Ala377Ala
M0061205 JPDAAOPO_00002 2804 10 Skin 0.53 protein_coding synonymous_variant LOW 1119G>A Thr373Thr
M0061206 JPDAAOPO_00002 2939 8 Skin 0.42 protein_coding synonymous_variant LOW 984C>T Gly328Gly
M0061207 JPDAAOPO_00002 2941 8 Skin 0.42 protein_coding missense_variant MODERATE 982G>A Gly328Ser
M0061208 JPDAAOPO_00002 2978 13 Skin 0.68 protein_coding synonymous_variant LOW 945T>G Val315Val
M0061209 JPDAAOPO_00002 3110 11 Skin 0.58 protein_coding synonymous_variant LOW 813A>G Ser271Ser
M0061210 JPDAAOPO_00002 3257 7 Skin 0.37 protein_coding synonymous_variant LOW 666A>G Gly222Gly
M0061211 JPDAAOPO_00002 3392 10 Skin 0.53 protein_coding synonymous_variant LOW 531G>A Arg177Arg
M0061212 JPDAAOPO_00002 3614 11 Skin 0.58 protein_coding synonymous_variant LOW 309A>G Glu103Glu
M0061213 JPDAAOPO_00002 3782 5 Skin 0.26 protein_coding synonymous_variant LOW 141C>T Ser47Ser
M0061214 JPDAAOPO_00002 3829 4 Skin 0.21 protein_coding missense_variant MODERATE 94A>T Ile32Phe
M0061215 JPDAAOPO_00003 4035 12 Skin 0.63 protein_coding missense_variant MODERATE 244G>C Val82Leu
M0061216 JPDAAOPO_00003 4066 7 Skin 0.37 protein_coding synonymous_variant LOW 213C>T Arg71Arg
M0061217 JPDAAOPO_00004 4461 5 Skin 0.26 protein_coding missense_variant MODERATE 52A>G Ile18Val
M0061218 JPDAAOPO_00002 5089 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1167C>T None
M0061219 JPDAAOPO_00002 5090 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1168G>A None
M0061220 JPDAAOPO_00002 5095 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1173T>C None
M0061221 JPDAAOPO_00002 5107 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1185T>C None
M0061222 JPDAAOPO_00002 5120 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1198T>C None
M0061223 JPDAAOPO_00002 5122 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -1200A>T None
M0061224 JPDAAOPO_00006 5188 5 Skin 0.26 protein_coding synonymous_variant LOW 1749G>A Lys583Lys
M0061225 JPDAAOPO_00006 5206 5 Skin 0.26 protein_coding synonymous_variant LOW 1731A>G Glu577Glu
M0061226 JPDAAOPO_00006 5233 9 Skin 0.47 protein_coding missense_variant MODERATE 1704C>G His568Gln
M0061227 JPDAAOPO_00006 5296 6 Skin 0.32 protein_coding synonymous_variant LOW 1641C>T Ala547Ala
M0061228 JPDAAOPO_00006 5299 8 Skin 0.42 protein_coding synonymous_variant LOW 1638T>C Ala546Ala
M0061229 JPDAAOPO_00006 5328 8 Skin 0.42 protein_coding missense_variant MODERATE 1609G>T Ala537Ser
M0061230 JPDAAOPO_00006 5383 5 Skin 0.26 protein_coding synonymous_variant LOW 1554C>T Gly518Gly
M0061231 JPDAAOPO_00006 5386 7 Skin 0.37 protein_coding synonymous_variant LOW 1551A>G Glu517Glu
M0061232 JPDAAOPO_00006 5389 7 Skin 0.37 protein_coding synonymous_variant LOW 1548C>T Val516Val
M0061233 JPDAAOPO_00006 5398 6 Skin 0.32 protein_coding synonymous_variant LOW 1539A>G Val513Val
M0061234 JPDAAOPO_00006 5401 7 Skin 0.37 protein_coding synonymous_variant LOW 1536T>C Gly512Gly
M0061235 JPDAAOPO_00006 5413 8 Skin 0.42 protein_coding synonymous_variant LOW 1524G>A Pro508Pro
M0061236 JPDAAOPO_00006 5418 5 Skin 0.26 protein_coding missense_variant MODERATE 1519A>G Asn507Asp
M0061237 JPDAAOPO_00006 5431 9 Skin 0.47 protein_coding synonymous_variant LOW 1506T>G Pro502Pro
M0061238 JPDAAOPO_00006 5461 6 Skin 0.32 protein_coding synonymous_variant LOW 1476C>T Cys492Cys
M0061239 JPDAAOPO_00006 5488 11 Skin 0.58 protein_coding synonymous_variant LOW 1449C>T Asp483Asp
M0061240 JPDAAOPO_00006 5497 11 Skin 0.58 protein_coding synonymous_variant LOW 1440T>C Val480Val
M0061241 JPDAAOPO_00006 5508 6 Skin 0.32 protein_coding synonymous_variant LOW 1429C>T Leu477Leu
M0061242 JPDAAOPO_00006 5512 9 Skin 0.47 protein_coding synonymous_variant LOW 1425A>G Glu475Glu
M0061243 JPDAAOPO_00006 5557 6 Skin 0.32 protein_coding synonymous_variant LOW 1380C>T Gly460Gly
M0061244 JPDAAOPO_00006 5563 11 Skin 0.58 protein_coding synonymous_variant LOW 1374A>G Glu458Glu
M0061245 JPDAAOPO_00006 5665 5 Skin 0.26 protein_coding synonymous_variant LOW 1272G>A Pro424Pro
M0061246 JPDAAOPO_00006 5785 7 Skin 0.37 protein_coding synonymous_variant LOW 1152T>C Ala384Ala
M0061247 JPDAAOPO_00006 5854 9 Skin 0.47 protein_coding synonymous_variant LOW 1083A>C Gly361Gly
M0061248 JPDAAOPO_00006 5857 5 Skin 0.26 protein_coding synonymous_variant LOW 1080G>A Glu360Glu
M0061249 JPDAAOPO_00006 5860 9 Skin 0.47 protein_coding synonymous_variant LOW 1077C>T Phe359Phe
M0061250 JPDAAOPO_00006 5878 4 Skin 0.21 protein_coding synonymous_variant LOW 1059G>A Pro353Pro
M0061251 JPDAAOPO_00006 5917 4 Skin 0.21 protein_coding synonymous_variant LOW 1020G>A Pro340Pro
M0061252 JPDAAOPO_00006 5923 10 Skin 0.53 protein_coding synonymous_variant LOW 1014T>C Arg338Arg
M0061253 JPDAAOPO_00006 5980 7 Skin 0.37 protein_coding synonymous_variant LOW 957C>T Ile319Ile
M0061254 JPDAAOPO_00006 6022 8 Skin 0.42 protein_coding synonymous_variant LOW 915G>A Pro305Pro
M0061255 JPDAAOPO_00006 6052 3 Skin 0.16 protein_coding synonymous_variant LOW 885G>A Lys295Lys
M0061256 JPDAAOPO_00006 6067 6 Skin 0.32 protein_coding synonymous_variant LOW 870T>C Arg290Arg
M0061257 JPDAAOPO_00006 6088 7 Skin 0.37 protein_coding synonymous_variant LOW 849G>A Glu283Glu
M0061258 JPDAAOPO_00006 6172 9 Skin 0.47 protein_coding synonymous_variant LOW 765T>C Tyr255Tyr
M0061259 JPDAAOPO_00006 6292 7 Skin 0.37 protein_coding synonymous_variant LOW 645T>C Arg215Arg
M0061260 JPDAAOPO_00006 6427 3 Skin 0.16 protein_coding synonymous_variant LOW 510T>C Gly170Gly
M0061261 JPDAAOPO_00006 6475 7 Skin 0.37 protein_coding synonymous_variant LOW 462A>G Pro154Pro
M0061262 JPDAAOPO_00006 6481 6 Skin 0.32 protein_coding synonymous_variant LOW 456T>C Ala152Ala
M0061263 JPDAAOPO_00001 186 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -202C>G None
M0061264 JPDAAOPO_00001 197 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -191G>A None
M0061265 JPDAAOPO_00001 578 3 Skin 0.16 protein_coding missense_variant MODERATE 191G>A Arg64Lys
M0061266 JPDAAOPO_00001 587 4 Skin 0.21 protein_coding missense_variant MODERATE 200G>T Arg67Leu
M0061267 JPDAAOPO_00001 591 3 Skin 0.16 protein_coding synonymous_variant LOW 204G>A Pro68Pro
M0061268 JPDAAOPO_00001 690 3 Skin 0.16 protein_coding synonymous_variant LOW 303T>C Asn101Asn
M0061269 JPDAAOPO_00001 1039 5 Skin 0.26 protein_coding missense_variant MODERATE 652A>G Ile218Val
M0061270 JPDAAOPO_00001 1177 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *64G>A None
M0061271 JPDAAOPO_00001 1285 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *172C>A None
M0061272 JPDAAOPO_00001 1292 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *179A>G None
M0061273 JPDAAOPO_00001 1412 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *299G>A None
M0061274 JPDAAOPO_00001 1616 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *503T>G None
M0061275 JPDAAOPO_00001 1667 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *554G>A None
M0061276 JPDAAOPO_00001 1882 3 Skin 0.16 protein_coding downstream_gene_variant MODIFIER *769G>A None
M0061277 JPDAAOPO_00002 2194 4 Skin 0.21 protein_coding synonymous_variant LOW 1729C>A Arg577Arg
M0061278 JPDAAOPO_00002 2342 4 Skin 0.21 protein_coding synonymous_variant LOW 1581C>T Asn527Asn
M0061279 JPDAAOPO_00002 2387 5 Skin 0.26 protein_coding missense_variant MODERATE 1536A>T Glu512Asp
M0061280 JPDAAOPO_00002 2440 6 Skin 0.32 protein_coding missense_variant MODERATE 1483A>G Asn495Asp
M0061281 JPDAAOPO_00002 2816 3 Skin 0.16 protein_coding synonymous_variant LOW 1107G>A Glu369Glu
M0061282 JPDAAOPO_00002 2825 5 Skin 0.26 protein_coding synonymous_variant LOW 1098A>G Ala366Ala
M0061283 JPDAAOPO_00002 2848 4 Skin 0.21 protein_coding missense_variant MODERATE 1075A>G Thr359Ala
M0061284 JPDAAOPO_00002 3119 3 Skin 0.16 protein_coding synonymous_variant LOW 804T>G Val268Val
M0061285 JPDAAOPO_00002 3468 5 Skin 0.26 protein_coding missense_variant MODERATE 455C>A Ala152Glu
M0061286 JPDAAOPO_00002 3530 4 Skin 0.21 protein_coding synonymous_variant LOW 393A>G Ala131Ala
M0061287 JPDAAOPO_00002 3548 5 Skin 0.26 protein_coding synonymous_variant LOW 375T>C Ala125Ala
M0061288 JPDAAOPO_00002 3599 4 Skin 0.21 protein_coding synonymous_variant LOW 324A>G Ala108Ala
M0061289 JPDAAOPO_00002 3818 4 Skin 0.21 protein_coding synonymous_variant LOW 105C>G Gly35Gly
M0061290 JPDAAOPO_00002 3878 6 Skin 0.32 protein_coding synonymous_variant LOW 45C>T Ile15Ile
M0061291 JPDAAOPO_00002 3888 5 Skin 0.26 protein_coding missense_variant MODERATE 35C>T Ala12Val
M0061292 JPDAAOPO_00003 3923 6 Skin 0.32 protein_coding missense_variant MODERATE 356T>C Val119Ala
M0061293 JPDAAOPO_00003 3930 6 Skin 0.32 protein_coding missense_variant MODERATE 349G>A Ala117Thr
M0061294 JPDAAOPO_00003 3947 6 Skin 0.32 protein_coding missense_variant MODERATE 332G>A Gly111Asp
M0061295 JPDAAOPO_00003 4000 7 Skin 0.37 protein_coding synonymous_variant LOW 279A>G Thr93Thr
M0061296 JPDAAOPO_00003 4008 7 Skin 0.37 protein_coding missense_variant MODERATE 271A>C Asn91His
M0061297 JPDAAOPO_00003 4012 7 Skin 0.37 protein_coding synonymous_variant LOW 267A>G Leu89Leu
M0061298 JPDAAOPO_00003 4039 6 Skin 0.32 protein_coding synonymous_variant LOW 240G>C Pro80Pro
M0061299 JPDAAOPO_00003 4111 7 Skin 0.37 protein_coding synonymous_variant LOW 168T>C Ser56Ser
M0061300 JPDAAOPO_00003 4126 7 Skin 0.37 protein_coding synonymous_variant LOW 153T>C Val51Val
M0061301 JPDAAOPO_00003 4158 6 Skin 0.32 protein_coding missense_variant MODERATE 121T>G Ser41Ala
M0061302 JPDAAOPO_00003 4165 7 Skin 0.37 protein_coding synonymous_variant LOW 114T>C Ala38Ala
M0061303 JPDAAOPO_00003 4197 8 Skin 0.42 protein_coding missense_variant MODERATE 82A>C Ile28Leu
M0061304 JPDAAOPO_00002 4280 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -358A>G None
M0061305 JPDAAOPO_00002 4287 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -365G>A None
M0061306 JPDAAOPO_00002 4296 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -374C>T None
M0061307 JPDAAOPO_00002 4349 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -427C>G None
M0061308 JPDAAOPO_00004 4386 7 Skin 0.37 protein_coding stop_lost&splice_region_variant HIGH 127T>C Ter43Glnext*?
M0061309 JPDAAOPO_00004 4394 5 Skin 0.26 protein_coding missense_variant MODERATE 119T>C Val40Ala
M0061310 JPDAAOPO_00004 4402 8 Skin 0.42 protein_coding missense_variant MODERATE 111G>C Arg37Ser
M0061311 JPDAAOPO_00004 4417 7 Skin 0.37 protein_coding synonymous_variant LOW 96T>C Pro32Pro
M0061312 JPDAAOPO_00004 4438 4 Skin 0.21 protein_coding synonymous_variant LOW 75T>C Asn25Asn
M0061313 JPDAAOPO_00002 4542 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -620A>G None
M0061314 JPDAAOPO_00002 4564 7 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -642T>C None
M0061315 JPDAAOPO_00002 4585 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -663C>T None
M0061316 JPDAAOPO_00002 4624 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -702C>A None
M0061317 JPDAAOPO_00002 4648 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -726C>T None
M0061318 JPDAAOPO_00002 4681 6 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -759C>T None
M0061319 JPDAAOPO_00002 4688 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -766C>A None
M0061320 JPDAAOPO_00002 4698 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -776C>T None
M0061321 JPDAAOPO_00002 4746 8 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -824T>G None
M0061322 JPDAAOPO_00002 4760 8 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -838T>C None
M0061323 JPDAAOPO_00002 4797 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -875C>T None
M0061324 JPDAAOPO_00002 4830 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -908A>G None
M0061325 JPDAAOPO_00002 5150 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1228G>A None
M0061326 JPDAAOPO_00002 5151 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1229C>T None
M0061327 JPDAAOPO_00002 5153 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1231G>C None
M0061328 JPDAAOPO_00002 5157 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1235G>A None
M0061329 JPDAAOPO_00006 5269 4 Skin 0.21 protein_coding synonymous_variant LOW 1668G>A Leu556Leu
M0061330 JPDAAOPO_00006 5422 3 Skin 0.16 protein_coding synonymous_variant LOW 1515G>C Val505Val
M0061331 JPDAAOPO_00006 5572 4 Skin 0.21 protein_coding synonymous_variant LOW 1365C>T Ala455Ala
M0061332 JPDAAOPO_00006 5731 5 Skin 0.26 protein_coding synonymous_variant LOW 1206T>C Val402Val
M0061333 JPDAAOPO_00006 5779 3 Skin 0.16 protein_coding synonymous_variant LOW 1158T>C Arg386Arg
M0061334 JPDAAOPO_00006 5950 3 Skin 0.16 protein_coding synonymous_variant LOW 987C>T Ser329Ser
M0061335 JPDAAOPO_00006 5953 4 Skin 0.21 protein_coding synonymous_variant LOW 984G>T Ala328Ala
M0061336 JPDAAOPO_00006 5956 3 Skin 0.16 protein_coding synonymous_variant LOW 981C>T Thr327Thr
M0061337 JPDAAOPO_00006 5974 3 Skin 0.16 protein_coding synonymous_variant LOW 963T>C Tyr321Tyr
M0061338 JPDAAOPO_00006 5986 3 Skin 0.16 protein_coding synonymous_variant LOW 951C>T Val317Val
M0061339 JPDAAOPO_00006 6220 5 Skin 0.26 protein_coding synonymous_variant LOW 717C>T Phe239Phe
M0061340 JPDAAOPO_00006 6223 6 Skin 0.32 protein_coding synonymous_variant LOW 714T>A Ala238Ala
M0061341 JPDAAOPO_00006 6232 5 Skin 0.26 protein_coding synonymous_variant LOW 705C>T Arg235Arg
M0061342 JPDAAOPO_00006 6259 4 Skin 0.21 protein_coding synonymous_variant LOW 678C>T Asn226Asn
M0061343 JPDAAOPO_00006 6265 3 Skin 0.16 protein_coding synonymous_variant LOW 672C>T Tyr224Tyr
M0061344 JPDAAOPO_00006 6268 5 Skin 0.26 protein_coding synonymous_variant LOW 669G>C Leu223Leu
M0061345 JPDAAOPO_00006 6277 3 Skin 0.16 protein_coding synonymous_variant LOW 660C>T Arg220Arg
M0061346 JPDAAOPO_00006 6316 6 Skin 0.32 protein_coding synonymous_variant LOW 621T>C Asp207Asp
M0061347 JPDAAOPO_00006 6765 4 Skin 0.21 protein_coding synonymous_variant LOW 172T>C Leu58Leu
M0061348 JPDAAOPO_00001 107 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -281C>T None
M0061349 JPDAAOPO_00002 4827 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -905G>A None
M0061350 JPDAAOPO_00006 5259 4 Skin 0.21 protein_coding missense_variant MODERATE 1678T>C Tyr560His
M0061351 JPDAAOPO_00006 5353 3 Skin 0.16 protein_coding synonymous_variant LOW 1584A>G Pro528Pro
M0061352 JPDAAOPO_00006 5821 3 Skin 0.16 protein_coding synonymous_variant LOW 1116C>T Asp372Asp
M0061353 JPDAAOPO_00006 6274 3 Skin 0.16 protein_coding synonymous_variant LOW 663C>T Ala221Ala
M0061354 JPDAAOPO_00006 6673 3 Skin 0.16 protein_coding synonymous_variant LOW 264A>G Pro88Pro
M0061355 JPDAAOPO_00006 6679 3 Skin 0.16 protein_coding synonymous_variant LOW 258A>G Pro86Pro
M0061356 JPDAAOPO_00006 6691 3 Skin 0.16 protein_coding synonymous_variant LOW 246T>C Tyr82Tyr
M0061357 JPDAAOPO_00006 6715 3 Skin 0.16 protein_coding synonymous_variant LOW 222C>T Gly74Gly
M0061358 JPDAAOPO_00002 3890 3 Skin 0.16 protein_coding synonymous_variant LOW 33C>T Pro11Pro
M0061359 JPDAAOPO_00004 4411 3 Skin 0.16 protein_coding stop_gained HIGH 102G>A Trp34*
M0061360 JPDAAOPO_00004 4426 3 Skin 0.16 protein_coding synonymous_variant LOW 87C>T His29His
M0061361 JPDAAOPO_00002 4596 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -674T>C None
M0061362 JPDAAOPO_00002 4636 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -714A>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
JPDAAOPO_00003 Cobalt (Co), Nickel (Ni) 99.2 1.1e-61 1 119 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term