Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2813
  Reference Plasmid   DP1806001416_bin.4__NODE_143_length_5563_cov_0.583455
  Reference Plasmid Size   5563
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0061593 BLAJNNOA_00001 788 13 Skin 0.28 protein_coding synonymous_variant LOW 771G>A Glu257Glu
M0061594 BLAJNNOA_00006 813 17 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2730C>A None
M0061595 BLAJNNOA_00003 1424 21 Skin 0.45 protein_coding missense_variant MODERATE 190T>G Ser64Ala
M0061596 BLAJNNOA_00002 3478 26 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -2318C>T None
M0061597 BLAJNNOA_00006 3781 35 Skin 0.74 protein_coding missense_variant MODERATE 239A>G Lys80Arg
M0061598 BLAJNNOA_00007 3999 30 Skin 0.64 protein_coding missense_variant MODERATE 182G>T Cys61Phe
M0061599 BLAJNNOA_00007 4507 11 Skin 0.23 protein_coding synonymous_variant LOW 690C>A Thr230Thr
M0061600 BLAJNNOA_00007 4558 29 Skin 0.62 protein_coding synonymous_variant LOW 741C>T Cys247Cys
M0061601 BLAJNNOA_00007 4590 23 Skin 0.49 protein_coding missense_variant MODERATE 773G>C Gly258Ala
M0061602 BLAJNNOA_00007 4301 10 Skin 0.21 protein_coding missense_variant MODERATE 484C>T Pro162Ser
M0061603 BLAJNNOA_00004 2624 4 Skin 0.09 protein_coding synonymous_variant LOW 364T>C Leu122Leu
M0061604 BLAJNNOA_00004 2982 3 Skin 0.06 protein_coding synonymous_variant LOW 6T>C Ser2Ser
M0061605 BLAJNNOA_00005 3011 4 Skin 0.09 protein_coding synonymous_variant LOW 465T>C Asp155Asp
M0061606 BLAJNNOA_00005 3072 3 Skin 0.06 protein_coding missense_variant MODERATE 404A>G Asp135Gly
M0061607 BLAJNNOA_00005 3074 3 Skin 0.06 protein_coding synonymous_variant LOW 402A>G Arg134Arg
M0061608 BLAJNNOA_00005 3093 3 Skin 0.06 protein_coding missense_variant MODERATE 383T>C Met128Thr
M0061609 BLAJNNOA_00005 3102 3 Skin 0.06 protein_coding missense_variant MODERATE 374C>T Ala125Val
M0061610 BLAJNNOA_00002 4695 6 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3535A>G None
M0061611 BLAJNNOA_00004 1971 3 Skin 0.06 protein_coding synonymous_variant LOW 1017T>C Ser339Ser
M0061612 BLAJNNOA_00004 2001 3 Skin 0.06 protein_coding synonymous_variant LOW 987C>T Ile329Ile
M0061613 BLAJNNOA_00004 2034 3 Skin 0.06 protein_coding synonymous_variant LOW 954C>T Ala318Ala
M0061614 BLAJNNOA_00004 2037 3 Skin 0.06 protein_coding synonymous_variant LOW 951T>C Thr317Thr
M0061615 BLAJNNOA_00004 2060 3 Skin 0.06 protein_coding synonymous_variant LOW 928C>T Leu310Leu
M0061616 BLAJNNOA_00004 2069 3 Skin 0.06 protein_coding missense_variant MODERATE 919C>T Leu307Phe
M0061617 BLAJNNOA_00004 2072 3 Skin 0.06 protein_coding missense_variant MODERATE 916G>A Val306Ile
M0061618 BLAJNNOA_00004 2085 3 Skin 0.06 protein_coding synonymous_variant LOW 903A>G Gln301Gln
M0061619 BLAJNNOA_00001 789 4 Skin 0.09 protein_coding missense_variant MODERATE 772G>A Val258Ile
M0061620 BLAJNNOA_00004 2596 4 Skin 0.09 protein_coding missense_variant MODERATE 392C>T Ala131Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term