Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2820
  Reference Plasmid   DP1807004299_bin.4__NODE_15_length_44522_cov_2.527767
  Reference Plasmid Size   44522
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0062007 KKJGOFBD_00014 12570 21 Skin 0.17 protein_coding synonymous_variant LOW 345C>T Gly115Gly
M0062008 KKJGOFBD_00014 12657 23 Skin 0.18 protein_coding synonymous_variant LOW 258G>T Leu86Leu
M0062009 KKJGOFBD_00014 12696 23 Skin 0.18 protein_coding synonymous_variant LOW 219C>T Asp73Asp
M0062010 KKJGOFBD_00014 12702 23 Skin 0.18 protein_coding synonymous_variant LOW 213C>T Cys71Cys
M0062011 KKJGOFBD_00014 12720 23 Skin 0.18 protein_coding synonymous_variant LOW 195C>T Asp65Asp
M0062012 KKJGOFBD_00014 12732 23 Skin 0.18 protein_coding synonymous_variant LOW 183C>T Gly61Gly
M0062013 KKJGOFBD_00014 12738 23 Skin 0.18 protein_coding synonymous_variant LOW 177C>A Ala59Ala
M0062014 KKJGOFBD_00014 12744 23 Skin 0.18 protein_coding synonymous_variant LOW 171A>G Glu57Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
KKJGOFBD_00036 PHI:6456 MAB_4780 90.4 5.2e-179 1 341 1.0000 1.0000 bony fishes pulmonary disease MaoC-like dehydratase loss of pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
KKJGOFBD_00021 QQG89980.1|GH0 100 9.04e-186 1 270 1 1
KKJGOFBD_00034 AMW22296.1|GH0 99.6 1.48e-171 1 230 1 0.9583
KKJGOFBD_00038 QQH00080.1|GH6 100 6.08e-219 1 299 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term