Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2824
  Reference Plasmid   DP1807004325_bin.3__NODE_297_length_8145_cov_0.878076
  Reference Plasmid Size   8145
  Reference Plasmid GC Content   0.61
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0063455 JAJPAHNK_00001 116 4 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -188C>T None
M0063456 JAJPAHNK_00001 466 7 Skin 0.78 protein_coding missense_variant MODERATE 163A>G Ser55Gly
M0063457 JAJPAHNK_00001 509 7 Skin 0.78 protein_coding missense_variant MODERATE 206T>C Val69Ala
M0063458 JAJPAHNK_00001 519 7 Skin 0.78 protein_coding synonymous_variant LOW 216G>C Val72Val
M0063459 JAJPAHNK_00002 812 3 Skin 0.33 protein_coding synonymous_variant LOW 366A>G Gln122Gln
M0063460 JAJPAHNK_00004 2106 3 Skin 0.33 protein_coding synonymous_variant LOW 291G>A Thr97Thr
M0063461 JAJPAHNK_00004 2166 3 Skin 0.33 protein_coding synonymous_variant LOW 351C>T Ser117Ser
M0063462 JAJPAHNK_00004 2154 4 Skin 0.44 protein_coding synonymous_variant LOW 339G>A Lys113Lys
M0063463 JAJPAHNK_00001 200 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -104G>T None
M0063464 JAJPAHNK_00001 359 3 Skin 0.33 protein_coding missense_variant MODERATE 56T>A Met19Lys
M0063465 JAJPAHNK_00001 363 3 Skin 0.33 protein_coding synonymous_variant LOW 60C>T Ile20Ile
M0063466 JAJPAHNK_00001 393 3 Skin 0.33 protein_coding synonymous_variant LOW 90C>T Val30Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term