Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2825
  Reference Plasmid   DP1807004325_bin.3__NODE_357_length_7471_cov_1.135106
  Reference Plasmid Size   7471
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0063467 MOCGLKOC_00003 2768 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -59A>G None
M0063468 MOCGLKOC_00004 2975 5 Skin 0.63 protein_coding synonymous_variant LOW 192G>A Leu64Leu
M0063469 MOCGLKOC_00004 2984 7 Skin 0.88 protein_coding synonymous_variant LOW 201A>T Ile67Ile
M0063470 MOCGLKOC_00004 3023 6 Skin 0.75 protein_coding synonymous_variant LOW 240G>A Gly80Gly
M0063471 MOCGLKOC_00004 3422 3 Skin 0.38 protein_coding synonymous_variant LOW 639G>C Val213Val
M0063472 MOCGLKOC_00004 3425 3 Skin 0.38 protein_coding synonymous_variant LOW 642T>C Cys214Cys
M0063473 MOCGLKOC_00004 3428 3 Skin 0.38 protein_coding synonymous_variant LOW 645C>T Gly215Gly
M0063474 MOCGLKOC_00004 3434 5 Skin 0.63 protein_coding synonymous_variant LOW 651G>A Glu217Glu
M0063475 MOCGLKOC_00004 3464 4 Skin 0.50 protein_coding synonymous_variant LOW 681C>G Ala227Ala
M0063476 MOCGLKOC_00005 4080 6 Skin 0.75 protein_coding synonymous_variant LOW 810C>G Leu270Leu
M0063477 MOCGLKOC_00005 4086 6 Skin 0.75 protein_coding synonymous_variant LOW 804C>T Gly268Gly
M0063478 MOCGLKOC_00005 4101 6 Skin 0.75 protein_coding synonymous_variant LOW 789C>T Asp263Asp
M0063479 MOCGLKOC_00005 4113 7 Skin 0.88 protein_coding synonymous_variant LOW 777C>G Arg259Arg
M0063480 MOCGLKOC_00005 4119 7 Skin 0.88 protein_coding synonymous_variant LOW 771T>C Ile257Ile
M0063481 MOCGLKOC_00005 4449 7 Skin 0.88 protein_coding synonymous_variant LOW 441A>G Thr147Thr
M0063482 MOCGLKOC_00005 4494 7 Skin 0.88 protein_coding synonymous_variant LOW 396C>T Pro132Pro
M0063483 MOCGLKOC_00005 4542 7 Skin 0.88 protein_coding synonymous_variant LOW 348G>A Val116Val
M0063484 MOCGLKOC_00005 4866 3 Skin 0.38 protein_coding synonymous_variant LOW 24C>T Leu8Leu
M0063485 MOCGLKOC_00003 3533 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -824A>G None
M0063486 MOCGLKOC_00006 5234 6 Skin 0.75 protein_coding missense_variant MODERATE 61C>A Arg21Ser
M0063487 MOCGLKOC_00005 3828 3 Skin 0.38 protein_coding synonymous_variant LOW 1062G>A Lys354Lys
M0063488 MOCGLKOC_00005 3846 3 Skin 0.38 protein_coding synonymous_variant LOW 1044G>T Val348Val
M0063489 MOCGLKOC_00005 3870 3 Skin 0.38 protein_coding synonymous_variant LOW 1020C>T Gly340Gly
M0063490 MOCGLKOC_00005 3873 3 Skin 0.38 protein_coding synonymous_variant LOW 1017A>G Val339Val
M0063491 MOCGLKOC_00005 3876 3 Skin 0.38 protein_coding synonymous_variant LOW 1014G>C Ser338Ser
M0063492 MOCGLKOC_00005 3877 3 Skin 0.38 protein_coding missense_variant MODERATE 1013C>G Ser338Trp
M0063493 MOCGLKOC_00005 3878 3 Skin 0.38 protein_coding missense_variant MODERATE 1012T>A Ser338Thr
M0063494 MOCGLKOC_00005 3879 3 Skin 0.38 protein_coding synonymous_variant LOW 1011G>A Glu337Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term