Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2844
  Reference Plasmid   DP1807004401_bin.3__NODE_769_length_4775_cov_0.287639
  Reference Plasmid Size   4775
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0063844 KHKOHMJD_00002 308 4 Skin 0.29 protein_coding synonymous_variant LOW 246T>C Ile82Ile
M0063845 KHKOHMJD_00003 798 10 Skin 0.71 protein_coding synonymous_variant LOW 168T>A Leu56Leu
M0063846 KHKOHMJD_00003 912 4 Skin 0.29 protein_coding synonymous_variant LOW 54T>C Ala18Ala
M0063847 KHKOHMJD_00003 915 5 Skin 0.36 protein_coding synonymous_variant LOW 51T>C Arg17Arg
M0063848 KHKOHMJD_00004 991 6 Skin 0.43 protein_coding synonymous_variant LOW 300G>C Ala100Ala
M0063849 KHKOHMJD_00004 997 7 Skin 0.50 protein_coding synonymous_variant LOW 294G>C Thr98Thr
M0063850 KHKOHMJD_00004 1009 6 Skin 0.43 protein_coding synonymous_variant LOW 282C>T Phe94Phe
M0063851 KHKOHMJD_00004 1024 8 Skin 0.57 protein_coding missense_variant MODERATE 267G>C Glu89Asp
M0063852 KHKOHMJD_00004 1026 8 Skin 0.57 protein_coding missense_variant MODERATE 265G>C Glu89Gln
M0063853 KHKOHMJD_00004 1027 8 Skin 0.57 protein_coding synonymous_variant LOW 264T>G Ala88Ala
M0063854 KHKOHMJD_00004 1032 11 Skin 0.79 protein_coding synonymous_variant LOW 259T>C Leu87Leu
M0063855 KHKOHMJD_00004 1045 11 Skin 0.79 protein_coding synonymous_variant LOW 246C>G Leu82Leu
M0063856 KHKOHMJD_00004 1063 9 Skin 0.64 protein_coding synonymous_variant LOW 228T>C Tyr76Tyr
M0063857 KHKOHMJD_00004 1099 4 Skin 0.29 protein_coding synonymous_variant LOW 192C>T Phe64Phe
M0063858 KHKOHMJD_00004 1117 10 Skin 0.71 protein_coding synonymous_variant LOW 174C>G Gly58Gly
M0063859 KHKOHMJD_00004 1159 12 Skin 0.86 protein_coding synonymous_variant LOW 132G>A Glu44Glu
M0063860 KHKOHMJD_00004 1213 4 Skin 0.29 protein_coding synonymous_variant LOW 78C>T Phe26Phe
M0063861 KHKOHMJD_00004 1249 11 Skin 0.79 protein_coding synonymous_variant LOW 42T>C Leu14Leu
M0063862 KHKOHMJD_00004 1257 5 Skin 0.36 protein_coding synonymous_variant LOW 34C>T Leu12Leu
M0063863 KHKOHMJD_00002 1307 10 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -754A>G None
M0063864 KHKOHMJD_00002 1323 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -770C>T None
M0063865 KHKOHMJD_00002 1381 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -828G>A None
M0063866 KHKOHMJD_00002 1386 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -833G>A None
M0063867 KHKOHMJD_00002 1387 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -834T>C None
M0063868 KHKOHMJD_00002 1391 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -838C>T None
M0063869 KHKOHMJD_00002 1418 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -865C>A None
M0063870 KHKOHMJD_00005 1733 3 Skin 0.21 protein_coding missense_variant MODERATE 313G>A Val105Ile
M0063871 KHKOHMJD_00005 1840 12 Skin 0.86 protein_coding synonymous_variant LOW 420C>T Arg140Arg
M0063872 KHKOHMJD_00002 2678 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2125G>A None
M0063873 KHKOHMJD_00002 2679 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2126C>T None
M0063874 KHKOHMJD_00002 2683 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2130T>G None
M0063875 KHKOHMJD_00002 2684 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2131C>G None
M0063876 KHKOHMJD_00002 2685 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2132T>G None
M0063877 KHKOHMJD_00002 2688 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2135C>G None
M0063878 KHKOHMJD_00002 2697 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2144C>G None
M0063879 KHKOHMJD_00002 2730 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2177G>C None
M0063880 KHKOHMJD_00002 2734 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2181T>C None
M0063881 KHKOHMJD_00002 2833 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2280G>T None
M0063882 KHKOHMJD_00002 2834 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2281C>G None
M0063883 KHKOHMJD_00002 2838 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2285T>C None
M0063884 KHKOHMJD_00002 2839 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2286G>A None
M0063885 KHKOHMJD_00002 2842 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2289G>C None
M0063886 KHKOHMJD_00002 2863 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -2310G>T None
M0063887 KHKOHMJD_00006 2873 6 Skin 0.43 protein_coding missense_variant MODERATE 10G>A Ala4Thr
M0063888 KHKOHMJD_00006 2876 6 Skin 0.43 protein_coding missense_variant MODERATE 13G>C Glu5Gln
M0063889 KHKOHMJD_00006 2935 13 Skin 0.93 protein_coding synonymous_variant LOW 72G>C Pro24Pro
M0063890 KHKOHMJD_00006 2938 13 Skin 0.93 protein_coding synonymous_variant LOW 75A>G Gln25Gln
M0063891 KHKOHMJD_00006 3088 6 Skin 0.43 protein_coding synonymous_variant LOW 225C>T Asp75Asp
M0063892 KHKOHMJD_00006 3089 6 Skin 0.43 protein_coding missense_variant MODERATE 226G>A Ala76Thr
M0063893 KHKOHMJD_00006 3099 7 Skin 0.50 protein_coding missense_variant MODERATE 236G>A Arg79Gln
M0063894 KHKOHMJD_00006 3112 7 Skin 0.50 protein_coding synonymous_variant LOW 249G>A Glu83Glu
M0063895 KHKOHMJD_00006 3157 9 Skin 0.64 protein_coding synonymous_variant LOW 294T>C Ala98Ala
M0063896 KHKOHMJD_00006 3166 7 Skin 0.50 protein_coding synonymous_variant LOW 303C>T His101His
M0063897 KHKOHMJD_00006 3167 7 Skin 0.50 protein_coding synonymous_variant LOW 304C>T Leu102Leu
M0063898 KHKOHMJD_00006 3191 8 Skin 0.57 protein_coding synonymous_variant LOW 328T>C Leu110Leu
M0063899 KHKOHMJD_00006 3339 5 Skin 0.36 protein_coding missense_variant MODERATE 476T>G Leu159Arg
M0063900 KHKOHMJD_00006 3340 5 Skin 0.36 protein_coding synonymous_variant LOW 477C>G Leu159Leu
M0063901 KHKOHMJD_00006 3346 5 Skin 0.36 protein_coding synonymous_variant LOW 483T>C His161His
M0063902 KHKOHMJD_00006 3353 5 Skin 0.36 protein_coding missense_variant MODERATE 490A>G Ser164Gly
M0063903 KHKOHMJD_00006 3355 5 Skin 0.36 protein_coding synonymous_variant LOW 492C>T Ser164Ser
M0063904 KHKOHMJD_00006 3361 5 Skin 0.36 protein_coding synonymous_variant LOW 498T>C Tyr166Tyr
M0063905 KHKOHMJD_00006 3370 5 Skin 0.36 protein_coding synonymous_variant LOW 507A>G Lys169Lys
M0063906 KHKOHMJD_00006 3384 5 Skin 0.36 protein_coding missense_variant MODERATE 521G>A Arg174Gln
M0063907 KHKOHMJD_00006 3391 6 Skin 0.43 protein_coding synonymous_variant LOW 528C>G Arg176Arg
M0063908 KHKOHMJD_00006 3412 5 Skin 0.36 protein_coding synonymous_variant LOW 549C>T Thr183Thr
M0063909 KHKOHMJD_00006 3416 5 Skin 0.36 protein_coding missense_variant MODERATE 553T>C Ser185Pro
M0063910 KHKOHMJD_00007 3486 4 Skin 0.29 protein_coding synonymous_variant LOW 18C>G Val6Val
M0063911 KHKOHMJD_00007 3588 7 Skin 0.50 protein_coding missense_variant MODERATE 120A>C Glu40Asp
M0063912 KHKOHMJD_00007 3591 6 Skin 0.43 protein_coding synonymous_variant LOW 123C>T Gly41Gly
M0063913 KHKOHMJD_00007 3611 6 Skin 0.43 protein_coding missense_variant MODERATE 143G>C Gly48Ala
M0063914 KHKOHMJD_00007 3897 6 Skin 0.43 protein_coding synonymous_variant LOW 429C>T Asp143Asp
M0063915 KHKOHMJD_00007 3903 6 Skin 0.43 protein_coding synonymous_variant LOW 435C>T Ile145Ile
M0063916 KHKOHMJD_00007 3984 5 Skin 0.36 protein_coding synonymous_variant LOW 516C>T Ile172Ile
M0063917 KHKOHMJD_00007 4071 4 Skin 0.29 protein_coding synonymous_variant LOW 603G>C Val201Val
M0063918 KHKOHMJD_00007 4109 4 Skin 0.29 protein_coding missense_variant MODERATE 641G>C Ser214Thr
M0063919 KHKOHMJD_00007 4110 4 Skin 0.29 protein_coding synonymous_variant LOW 642C>T Ser214Ser
M0063920 KHKOHMJD_00007 4115 4 Skin 0.29 protein_coding missense_variant MODERATE 647A>C Asp216Ala
M0063921 KHKOHMJD_00007 4119 5 Skin 0.36 protein_coding missense_variant MODERATE 651G>C Gln217His
M0063922 KHKOHMJD_00007 4491 5 Skin 0.36 protein_coding synonymous_variant LOW 1023T>C Pro341Pro
M0063923 KHKOHMJD_00002 4677 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4124G>T None
M0063924 KHKOHMJD_00002 4678 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4125C>A None
M0063925 KHKOHMJD_00002 4680 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4127T>A None
M0063926 KHKOHMJD_00002 4682 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4129T>C None
M0063927 KHKOHMJD_00002 4713 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4160C>T None
M0063928 KHKOHMJD_00003 795 8 Skin 0.57 protein_coding synonymous_variant LOW 171C>T Ala57Ala
M0063929 KHKOHMJD_00004 1000 5 Skin 0.36 protein_coding synonymous_variant LOW 291C>T Phe97Phe
M0063930 KHKOHMJD_00004 1012 4 Skin 0.29 protein_coding synonymous_variant LOW 279G>A Glu93Glu
M0063931 KHKOHMJD_00004 1150 10 Skin 0.71 protein_coding synonymous_variant LOW 141G>C Leu47Leu
M0063932 KHKOHMJD_00004 1246 5 Skin 0.36 protein_coding synonymous_variant LOW 45G>C Leu15Leu
M0063933 KHKOHMJD_00004 1261 6 Skin 0.43 protein_coding synonymous_variant LOW 30T>C Leu10Leu
M0063934 KHKOHMJD_00004 1275 7 Skin 0.50 protein_coding synonymous_variant LOW 16C>T Leu6Leu
M0063935 KHKOHMJD_00004 1276 7 Skin 0.50 protein_coding synonymous_variant LOW 15A>G Leu5Leu
M0063936 KHKOHMJD_00002 2560 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2007C>T None
M0063937 KHKOHMJD_00001 45 3 Skin 0.21 protein_coding start_lost HIGH 1A>G Met1?
M0063938 KHKOHMJD_00001 59 3 Skin 0.21 protein_coding synonymous_variant LOW 15C>G Val5Val
M0063939 KHKOHMJD_00001 62 3 Skin 0.21 protein_coding synonymous_variant LOW 18C>T Ser6Ser
M0063940 KHKOHMJD_00001 65 3 Skin 0.21 protein_coding synonymous_variant LOW 21G>C Val7Val
M0063941 KHKOHMJD_00001 72 3 Skin 0.21 protein_coding missense_variant MODERATE 28G>A Val10Ile
M0063942 KHKOHMJD_00001 78 3 Skin 0.21 protein_coding missense_variant MODERATE 34T>C Tyr12His
M0063943 KHKOHMJD_00001 92 3 Skin 0.21 protein_coding synonymous_variant LOW 48C>T Phe16Phe
M0063944 KHKOHMJD_00001 125 4 Skin 0.29 protein_coding synonymous_variant LOW 81T>C Asp27Asp
M0063945 KHKOHMJD_00001 147 4 Skin 0.29 protein_coding missense_variant MODERATE 103A>G Ile35Val
M0063946 KHKOHMJD_00001 149 4 Skin 0.29 protein_coding missense_variant MODERATE 105A>G Ile35Met
M0063947 KHKOHMJD_00001 150 4 Skin 0.29 protein_coding missense_variant MODERATE 106T>A Ser36Thr
M0063948 KHKOHMJD_00001 152 4 Skin 0.29 protein_coding synonymous_variant LOW 108G>A Ser36Ser
M0063949 KHKOHMJD_00001 170 4 Skin 0.29 protein_coding synonymous_variant LOW 126T>C Cys42Cys
M0063950 KHKOHMJD_00001 173 4 Skin 0.29 protein_coding synonymous_variant LOW 129A>G Glu43Glu
M0063951 KHKOHMJD_00001 176 4 Skin 0.29 protein_coding synonymous_variant LOW 132A>G Lys44Lys
M0063952 KHKOHMJD_00003 948 6 Skin 0.43 protein_coding synonymous_variant LOW 18C>T Ala6Ala
M0063953 KHKOHMJD_00003 951 6 Skin 0.43 protein_coding synonymous_variant LOW 15T>C Ser5Ser
M0063954 KHKOHMJD_00003 952 6 Skin 0.43 protein_coding missense_variant MODERATE 14G>C Ser5Thr
M0063955 KHKOHMJD_00004 1030 3 Skin 0.21 protein_coding synonymous_variant LOW 261G>A Leu87Leu
M0063956 KHKOHMJD_00004 1047 3 Skin 0.21 protein_coding missense_variant MODERATE 244C>T Leu82Phe
M0063957 KHKOHMJD_00004 1048 3 Skin 0.21 protein_coding synonymous_variant LOW 243C>T Asp81Asp
M0063958 KHKOHMJD_00004 1051 3 Skin 0.21 protein_coding synonymous_variant LOW 240C>G Thr80Thr
M0063959 KHKOHMJD_00004 1054 3 Skin 0.21 protein_coding synonymous_variant LOW 237C>T Ile79Ile
M0063960 KHKOHMJD_00004 1057 3 Skin 0.21 protein_coding synonymous_variant LOW 234C>G Ala78Ala
M0063961 KHKOHMJD_00005 1594 5 Skin 0.36 protein_coding synonymous_variant LOW 174T>C Tyr58Tyr
M0063962 KHKOHMJD_00007 3595 3 Skin 0.21 protein_coding missense_variant MODERATE 127G>A Gly43Ser
M0063963 KHKOHMJD_00007 4173 3 Skin 0.21 protein_coding synonymous_variant LOW 705T>C Ala235Ala
M0063964 KHKOHMJD_00007 4179 3 Skin 0.21 protein_coding synonymous_variant LOW 711G>A Lys237Lys
M0063965 KHKOHMJD_00007 4181 3 Skin 0.21 protein_coding missense_variant MODERATE 713G>A Arg238Lys
M0063966 KHKOHMJD_00007 4197 3 Skin 0.21 protein_coding synonymous_variant LOW 729G>C Val243Val
M0063967 KHKOHMJD_00007 4203 3 Skin 0.21 protein_coding synonymous_variant LOW 735A>G Ala245Ala
M0063968 KHKOHMJD_00002 2802 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2249A>G None
M0063969 KHKOHMJD_00006 3313 3 Skin 0.21 protein_coding synonymous_variant LOW 450G>A Ala150Ala
M0063970 KHKOHMJD_00006 3316 3 Skin 0.21 protein_coding synonymous_variant LOW 453G>A Ala151Ala
M0063971 KHKOHMJD_00006 3320 3 Skin 0.21 protein_coding missense_variant MODERATE 457C>G Leu153Val
M0063972 KHKOHMJD_00003 897 3 Skin 0.21 protein_coding synonymous_variant LOW 69G>C Pro23Pro
M0063973 KHKOHMJD_00002 1883 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1330T>C None
M0063974 KHKOHMJD_00002 1887 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1334G>T None
M0063975 KHKOHMJD_00002 1889 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1336G>A None
M0063976 KHKOHMJD_00001 172 3 Skin 0.21 protein_coding missense_variant MODERATE 128A>C Glu43Ala
M0063977 KHKOHMJD_00006 3128 3 Skin 0.21 protein_coding missense_variant MODERATE 265G>A Asp89Asn
M0063978 KHKOHMJD_00006 3133 3 Skin 0.21 protein_coding synonymous_variant LOW 270G>C Ala90Ala
M0063979 KHKOHMJD_00006 3139 3 Skin 0.21 protein_coding missense_variant MODERATE 276A>G Ile92Met
M0063980 KHKOHMJD_00006 3145 3 Skin 0.21 protein_coding synonymous_variant LOW 282C>T Leu94Leu
M0063981 KHKOHMJD_00006 3148 3 Skin 0.21 protein_coding synonymous_variant LOW 285C>T Arg95Arg
M0063982 KHKOHMJD_00006 3151 3 Skin 0.21 protein_coding synonymous_variant LOW 288C>T Asn96Asn
M0063983 KHKOHMJD_00007 3873 3 Skin 0.21 protein_coding synonymous_variant LOW 405C>G Arg135Arg
M0063984 KHKOHMJD_00007 3876 3 Skin 0.21 protein_coding synonymous_variant LOW 408C>G Leu136Leu
M0063985 KHKOHMJD_00007 3882 3 Skin 0.21 protein_coding synonymous_variant LOW 414T>C His138His
M0063986 KHKOHMJD_00007 3915 3 Skin 0.21 protein_coding synonymous_variant LOW 447A>T Gly149Gly
M0063987 KHKOHMJD_00007 3927 3 Skin 0.21 protein_coding synonymous_variant LOW 459C>G Val153Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term