Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2847
  Reference Plasmid   DP1807004423_bin.7__NODE_55_length_17719_cov_1.666118
  Reference Plasmid Size   17719
  Reference Plasmid GC Content   0.67
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0064001 IKFGMPHL_00001 797 3 Skin 0.50 protein_coding synonymous_variant LOW 544C>T Leu182Leu
M0064002 IKFGMPHL_00001 2239 4 Skin 0.67 protein_coding synonymous_variant LOW 1986A>G Glu662Glu
M0064003 IKFGMPHL_00002 3140 3 Skin 0.50 protein_coding synonymous_variant LOW 1290C>T Arg430Arg
M0064004 IKFGMPHL_00002 3686 3 Skin 0.50 protein_coding synonymous_variant LOW 744C>T Ser248Ser
M0064005 IKFGMPHL_00002 3893 3 Skin 0.50 protein_coding synonymous_variant LOW 537A>G Thr179Thr
M0064006 IKFGMPHL_00002 4334 3 Skin 0.50 protein_coding synonymous_variant LOW 96C>G Ala32Ala
M0064007 IKFGMPHL_00002 4364 3 Skin 0.50 protein_coding synonymous_variant LOW 66C>G Arg22Arg
M0064008 IKFGMPHL_00006 6732 3 Skin 0.50 protein_coding synonymous_variant LOW 75G>A Gln25Gln
M0064009 IKFGMPHL_00006 6945 3 Skin 0.50 protein_coding synonymous_variant LOW 288A>C Thr96Thr
M0064010 IKFGMPHL_00006 6993 3 Skin 0.50 protein_coding synonymous_variant LOW 336T>C Ser112Ser
M0064011 IKFGMPHL_00006 7002 3 Skin 0.50 protein_coding synonymous_variant LOW 345T>C Ile115Ile
M0064012 IKFGMPHL_00006 7155 3 Skin 0.50 protein_coding synonymous_variant LOW 498T>C Asp166Asp
M0064013 IKFGMPHL_00006 7186 3 Skin 0.50 protein_coding missense_variant MODERATE 529G>A Val177Ile
M0064014 IKFGMPHL_00007 7733 4 Skin 0.67 protein_coding synonymous_variant LOW 1422T>C Asn474Asn
M0064015 IKFGMPHL_00007 7879 3 Skin 0.50 protein_coding missense_variant MODERATE 1276G>T Ala426Ser
M0064016 IKFGMPHL_00007 7880 3 Skin 0.50 protein_coding synonymous_variant LOW 1275C>T Ala425Ala
M0064017 IKFGMPHL_00007 7881 3 Skin 0.50 protein_coding missense_variant MODERATE 1274C>A Ala425Asp
M0064018 IKFGMPHL_00007 7886 3 Skin 0.50 protein_coding synonymous_variant LOW 1269T>C Asp423Asp
M0064019 IKFGMPHL_00007 7887 3 Skin 0.50 protein_coding missense_variant MODERATE 1268A>G Asp423Gly
M0064020 IKFGMPHL_00007 7967 3 Skin 0.50 protein_coding synonymous_variant LOW 1188A>G Arg396Arg
M0064021 IKFGMPHL_00007 7997 3 Skin 0.50 protein_coding synonymous_variant LOW 1158C>G Leu386Leu
M0064022 IKFGMPHL_00007 8015 3 Skin 0.50 protein_coding synonymous_variant LOW 1140C>T Gly380Gly
M0064023 IKFGMPHL_00007 8059 3 Skin 0.50 protein_coding synonymous_variant LOW 1096C>T Leu366Leu
M0064024 IKFGMPHL_00007 8060 3 Skin 0.50 protein_coding synonymous_variant LOW 1095T>C Phe365Phe
M0064025 IKFGMPHL_00007 8062 3 Skin 0.50 protein_coding missense_variant MODERATE 1093T>G Phe365Val
M0064026 IKFGMPHL_00007 8077 3 Skin 0.50 protein_coding missense_variant MODERATE 1078A>G Ile360Val
M0064027 IKFGMPHL_00007 8090 3 Skin 0.50 protein_coding synonymous_variant LOW 1065T>G Arg355Arg
M0064028 IKFGMPHL_00007 8102 3 Skin 0.50 protein_coding synonymous_variant LOW 1053C>G Gly351Gly
M0064029 IKFGMPHL_00001 2185 3 Skin 0.50 protein_coding synonymous_variant LOW 1932A>G Pro644Pro
M0064030 IKFGMPHL_00001 2209 3 Skin 0.50 protein_coding synonymous_variant LOW 1956A>C Thr652Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term