Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2848
  Reference Plasmid   DP1807004423_bin.9__NODE_586_length_5428_cov_5.497091
  Reference Plasmid Size   5428
  Reference Plasmid GC Content   0.45
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0064031 EBFMCNOJ_00001 942 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -760A>G None
M0064032 EBFMCNOJ_00001 954 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -748C>G None
M0064033 EBFMCNOJ_00001 960 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -742A>G None
M0064034 EBFMCNOJ_00001 963 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -739T>C None
M0064035 EBFMCNOJ_00001 1567 16 Skin 0.59 protein_coding upstream_gene_variant MODIFIER -135G>C None
M0064036 EBFMCNOJ_00001 1599 18 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -103C>T None
M0064037 EBFMCNOJ_00001 1612 8 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -90C>T None
M0064038 EBFMCNOJ_00001 1654 8 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -48T>C None
M0064039 EBFMCNOJ_00001 1672 18 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -30A>G None
M0064040 EBFMCNOJ_00001 1722 21 Skin 0.78 protein_coding synonymous_variant LOW 21T>G Ser7Ser
M0064041 EBFMCNOJ_00001 1737 12 Skin 0.44 protein_coding synonymous_variant LOW 36G>A Glu12Glu
M0064042 EBFMCNOJ_00001 1740 16 Skin 0.59 protein_coding synonymous_variant LOW 39G>A Gln13Gln
M0064043 EBFMCNOJ_00001 1743 16 Skin 0.59 protein_coding synonymous_variant LOW 42C>A Ser14Ser
M0064044 EBFMCNOJ_00001 1746 16 Skin 0.59 protein_coding synonymous_variant LOW 45G>A Gln15Gln
M0064045 EBFMCNOJ_00001 1749 16 Skin 0.59 protein_coding synonymous_variant LOW 48T>C Arg16Arg
M0064046 EBFMCNOJ_00001 1785 16 Skin 0.59 protein_coding synonymous_variant LOW 84C>T Ile28Ile
M0064047 EBFMCNOJ_00001 1833 19 Skin 0.70 protein_coding synonymous_variant LOW 132A>G Val44Val
M0064048 EBFMCNOJ_00001 1842 21 Skin 0.78 protein_coding synonymous_variant LOW 141C>G Ala47Ala
M0064049 EBFMCNOJ_00001 1848 19 Skin 0.70 protein_coding synonymous_variant LOW 147T>C Gly49Gly
M0064050 EBFMCNOJ_00002 2335 7 Skin 0.26 protein_coding synonymous_variant LOW 195C>T Gly65Gly
M0064051 EBFMCNOJ_00003 2652 6 Skin 0.22 protein_coding synonymous_variant LOW 1908C>T Arg636Arg
M0064052 EBFMCNOJ_00003 2697 10 Skin 0.37 protein_coding synonymous_variant LOW 1863C>T Asp621Asp
M0064053 EBFMCNOJ_00003 2856 6 Skin 0.22 protein_coding synonymous_variant LOW 1704C>G Val568Val
M0064054 EBFMCNOJ_00001 1215 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -487T>G None
M0064055 EBFMCNOJ_00001 1224 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -478A>G None
M0064056 EBFMCNOJ_00001 1233 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -469G>A None
M0064057 EBFMCNOJ_00001 1263 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -439A>G None
M0064058 EBFMCNOJ_00001 1311 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -391A>G None
M0064059 EBFMCNOJ_00001 1439 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -263A>G None
M0064060 EBFMCNOJ_00001 1464 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -238A>G None
M0064061 EBFMCNOJ_00001 1466 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -236C>A None
M0064062 EBFMCNOJ_00001 1467 12 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -235A>C None
M0064063 EBFMCNOJ_00001 1524 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -178A>G None
M0064064 EBFMCNOJ_00001 1538 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -164T>C None
M0064065 EBFMCNOJ_00001 1549 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -153C>T None
M0064066 EBFMCNOJ_00001 1590 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -112T>C None
M0064067 EBFMCNOJ_00001 1645 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -57A>G None
M0064068 EBFMCNOJ_00003 3192 4 Skin 0.15 protein_coding synonymous_variant LOW 1368T>G Gly456Gly
M0064069 EBFMCNOJ_00003 3231 11 Skin 0.41 protein_coding synonymous_variant LOW 1329A>G Ala443Ala
M0064070 EBFMCNOJ_00003 3243 16 Skin 0.59 protein_coding synonymous_variant LOW 1317T>C Asp439Asp
M0064071 EBFMCNOJ_00003 3264 16 Skin 0.59 protein_coding synonymous_variant LOW 1296A>G Leu432Leu
M0064072 EBFMCNOJ_00003 3267 6 Skin 0.22 protein_coding synonymous_variant LOW 1293A>G Glu431Glu
M0064073 EBFMCNOJ_00003 3456 19 Skin 0.70 protein_coding synonymous_variant LOW 1104T>A Ser368Ser
M0064074 EBFMCNOJ_00003 3465 18 Skin 0.67 protein_coding synonymous_variant LOW 1095A>G Pro365Pro
M0064075 EBFMCNOJ_00003 3468 18 Skin 0.67 protein_coding synonymous_variant LOW 1092A>G Glu364Glu
M0064076 EBFMCNOJ_00003 3510 18 Skin 0.67 protein_coding synonymous_variant LOW 1050A>G Leu350Leu
M0064077 EBFMCNOJ_00003 3543 16 Skin 0.59 protein_coding synonymous_variant LOW 1017A>G Val339Val
M0064078 EBFMCNOJ_00003 3552 6 Skin 0.22 protein_coding synonymous_variant LOW 1008C>T His336His
M0064079 EBFMCNOJ_00003 3621 15 Skin 0.56 protein_coding synonymous_variant LOW 939T>C Gly313Gly
M0064080 EBFMCNOJ_00003 3627 8 Skin 0.30 protein_coding synonymous_variant LOW 933T>C Asn311Asn
M0064081 EBFMCNOJ_00003 3701 3 Skin 0.11 protein_coding missense_variant MODERATE 859A>C Asn287His
M0064082 EBFMCNOJ_00003 3702 3 Skin 0.11 protein_coding synonymous_variant LOW 858T>C Asp286Asp
M0064083 EBFMCNOJ_00003 3870 7 Skin 0.26 protein_coding synonymous_variant LOW 690T>C Ala230Ala
M0064084 EBFMCNOJ_00003 3876 3 Skin 0.11 protein_coding synonymous_variant LOW 684A>T Leu228Leu
M0064085 EBFMCNOJ_00003 3918 9 Skin 0.33 protein_coding synonymous_variant LOW 642A>T Leu214Leu
M0064086 EBFMCNOJ_00003 3921 10 Skin 0.37 protein_coding synonymous_variant LOW 639A>G Gln213Gln
M0064087 EBFMCNOJ_00003 3986 6 Skin 0.22 protein_coding synonymous_variant LOW 574T>C Leu192Leu
M0064088 EBFMCNOJ_00003 4029 6 Skin 0.22 protein_coding synonymous_variant LOW 531T>C Tyr177Tyr
M0064089 EBFMCNOJ_00003 4059 10 Skin 0.37 protein_coding synonymous_variant LOW 501T>C Thr167Thr
M0064090 EBFMCNOJ_00001 1116 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -586A>T None
M0064091 EBFMCNOJ_00001 1119 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -583A>G None
M0064092 EBFMCNOJ_00001 1124 9 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -578A>G None
M0064093 EBFMCNOJ_00001 1146 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -556A>C None
M0064094 EBFMCNOJ_00001 1191 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -511C>G None
M0064095 EBFMCNOJ_00001 1254 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -448C>A None
M0064096 EBFMCNOJ_00001 1272 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -430A>C None
M0064097 EBFMCNOJ_00001 1274 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -428G>A None
M0064098 EBFMCNOJ_00001 1451 11 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -251T>G None
M0064099 EBFMCNOJ_00001 1628 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -74C>T None
M0064100 EBFMCNOJ_00001 1767 3 Skin 0.11 protein_coding synonymous_variant LOW 66C>T Asp22Asp
M0064101 EBFMCNOJ_00001 1782 3 Skin 0.11 protein_coding synonymous_variant LOW 81C>T Tyr27Tyr
M0064102 EBFMCNOJ_00001 1872 7 Skin 0.26 protein_coding synonymous_variant LOW 171G>A Leu57Leu
M0064103 EBFMCNOJ_00001 1893 3 Skin 0.11 protein_coding synonymous_variant LOW 192T>C Tyr64Tyr
M0064104 EBFMCNOJ_00001 1896 11 Skin 0.41 protein_coding synonymous_variant LOW 195T>C Ala65Ala
M0064105 EBFMCNOJ_00001 1899 9 Skin 0.33 protein_coding synonymous_variant LOW 198T>C Arg66Arg
M0064106 EBFMCNOJ_00001 1900 9 Skin 0.33 protein_coding missense_variant MODERATE 199G>A Glu67Lys
M0064107 EBFMCNOJ_00001 1917 3 Skin 0.11 protein_coding synonymous_variant LOW 216C>A Val72Val
M0064108 EBFMCNOJ_00001 2031 3 Skin 0.11 protein_coding downstream_gene_variant MODIFIER *42G>C None
M0064109 EBFMCNOJ_00001 2032 7 Skin 0.26 protein_coding downstream_gene_variant MODIFIER *43T>G None
M0064110 EBFMCNOJ_00001 2065 3 Skin 0.11 protein_coding downstream_gene_variant MODIFIER *76A>G None
M0064111 EBFMCNOJ_00002 2176 10 Skin 0.37 protein_coding synonymous_variant LOW 354C>T Asp118Asp
M0064112 EBFMCNOJ_00002 2338 3 Skin 0.11 protein_coding synonymous_variant LOW 192T>C Pro64Pro
M0064113 EBFMCNOJ_00003 2730 10 Skin 0.37 protein_coding synonymous_variant LOW 1830C>T Arg610Arg
M0064114 EBFMCNOJ_00003 2910 19 Skin 0.70 protein_coding synonymous_variant LOW 1650G>A Gln550Gln
M0064115 EBFMCNOJ_00003 2931 15 Skin 0.56 protein_coding synonymous_variant LOW 1629C>G Val543Val
M0064116 EBFMCNOJ_00003 2934 15 Skin 0.56 protein_coding synonymous_variant LOW 1626T>G Val542Val
M0064117 EBFMCNOJ_00003 2973 9 Skin 0.33 protein_coding synonymous_variant LOW 1587G>C Ala529Ala
M0064118 EBFMCNOJ_00003 3033 3 Skin 0.11 protein_coding synonymous_variant LOW 1527C>A Leu509Leu
M0064119 EBFMCNOJ_00003 3087 6 Skin 0.22 protein_coding synonymous_variant LOW 1473C>A Arg491Arg
M0064120 EBFMCNOJ_00003 3135 5 Skin 0.19 protein_coding synonymous_variant LOW 1425G>C Arg475Arg
M0064121 EBFMCNOJ_00003 3237 7 Skin 0.26 protein_coding synonymous_variant LOW 1323G>A Ala441Ala
M0064122 EBFMCNOJ_00003 3474 3 Skin 0.11 protein_coding synonymous_variant LOW 1086T>C Arg362Arg
M0064123 EBFMCNOJ_00003 3522 4 Skin 0.15 protein_coding synonymous_variant LOW 1038C>T Ser346Ser
M0064124 EBFMCNOJ_00003 3579 5 Skin 0.19 protein_coding synonymous_variant LOW 981C>A Ala327Ala
M0064125 EBFMCNOJ_00003 3690 14 Skin 0.52 protein_coding missense_variant MODERATE 870A>T Gln290His
M0064126 EBFMCNOJ_00003 3691 14 Skin 0.52 protein_coding missense_variant MODERATE 869A>T Gln290Leu
M0064127 EBFMCNOJ_00003 3798 7 Skin 0.26 protein_coding synonymous_variant LOW 762C>T His254His
M0064128 EBFMCNOJ_00001 1523 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -179C>T None
M0064129 EBFMCNOJ_00001 1601 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -101A>C None
M0064130 EBFMCNOJ_00001 1604 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -98G>C None
M0064131 EBFMCNOJ_00001 1627 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -75A>G None
M0064132 EBFMCNOJ_00001 1629 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -73G>A None
M0064133 EBFMCNOJ_00001 1630 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -72G>A None
M0064134 EBFMCNOJ_00002 2137 11 Skin 0.41 protein_coding synonymous_variant LOW 393T>C Arg131Arg
M0064135 EBFMCNOJ_00002 2140 5 Skin 0.19 protein_coding synonymous_variant LOW 390T>C Gly130Gly
M0064136 EBFMCNOJ_00002 2161 5 Skin 0.19 protein_coding synonymous_variant LOW 369A>G Glu123Glu
M0064137 EBFMCNOJ_00002 2182 10 Skin 0.37 protein_coding synonymous_variant LOW 348G>C Thr116Thr
M0064138 EBFMCNOJ_00002 2562 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -33T>C None
M0064139 EBFMCNOJ_00003 2873 7 Skin 0.26 protein_coding missense_variant MODERATE 1687C>G Gln563Glu
M0064140 EBFMCNOJ_00003 2905 10 Skin 0.37 protein_coding missense_variant MODERATE 1655C>A Pro552Gln
M0064141 EBFMCNOJ_00003 2906 12 Skin 0.44 protein_coding missense_variant MODERATE 1654C>G Pro552Ala
M0064142 EBFMCNOJ_00003 2907 10 Skin 0.37 protein_coding synonymous_variant LOW 1653G>C Ala551Ala
M0064143 EBFMCNOJ_00003 2994 18 Skin 0.67 protein_coding synonymous_variant LOW 1566G>T Gly522Gly
M0064144 EBFMCNOJ_00003 3219 11 Skin 0.41 protein_coding synonymous_variant LOW 1341C>A Ala447Ala
M0064145 EBFMCNOJ_00003 3861 14 Skin 0.52 protein_coding synonymous_variant LOW 699A>G Gln233Gln
M0064146 EBFMCNOJ_00003 3864 9 Skin 0.33 protein_coding synonymous_variant LOW 696C>T Ile232Ile
M0064147 EBFMCNOJ_00003 3878 10 Skin 0.37 protein_coding synonymous_variant LOW 682C>T Leu228Leu
M0064148 EBFMCNOJ_00003 3879 10 Skin 0.37 protein_coding synonymous_variant LOW 681C>T Asp227Asp
M0064149 EBFMCNOJ_00003 3888 5 Skin 0.19 protein_coding synonymous_variant LOW 672T>C Asp224Asp
M0064150 EBFMCNOJ_00003 3897 3 Skin 0.11 protein_coding synonymous_variant LOW 663T>C Ala221Ala
M0064151 EBFMCNOJ_00003 3909 12 Skin 0.44 protein_coding synonymous_variant LOW 651C>T Ile217Ile
M0064152 EBFMCNOJ_00003 3969 3 Skin 0.11 protein_coding synonymous_variant LOW 591C>T Leu197Leu
M0064153 EBFMCNOJ_00003 4068 5 Skin 0.19 protein_coding synonymous_variant LOW 492G>C Pro164Pro
M0064154 EBFMCNOJ_00003 4161 13 Skin 0.48 protein_coding synonymous_variant LOW 399C>T Asp133Asp
M0064155 EBFMCNOJ_00001 1155 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -547G>A None
M0064156 EBFMCNOJ_00001 1656 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -46A>G None
M0064157 EBFMCNOJ_00001 1735 7 Skin 0.26 protein_coding missense_variant MODERATE 34G>A Glu12Lys
M0064158 EBFMCNOJ_00001 1868 6 Skin 0.22 protein_coding missense_variant MODERATE 167C>A Ala56Glu
M0064159 EBFMCNOJ_00001 1870 6 Skin 0.22 protein_coding synonymous_variant LOW 169T>C Leu57Leu
M0064160 EBFMCNOJ_00001 2038 3 Skin 0.11 protein_coding downstream_gene_variant MODIFIER *49T>C None
M0064161 EBFMCNOJ_00003 2937 10 Skin 0.37 protein_coding synonymous_variant LOW 1623C>T Val541Val
M0064162 EBFMCNOJ_00003 3098 7 Skin 0.26 protein_coding synonymous_variant LOW 1462C>T Leu488Leu
M0064163 EBFMCNOJ_00003 3717 4 Skin 0.15 protein_coding synonymous_variant LOW 843C>A Arg281Arg
M0064164 EBFMCNOJ_00003 3831 5 Skin 0.19 protein_coding synonymous_variant LOW 729T>C His243His
M0064165 EBFMCNOJ_00003 4148 3 Skin 0.11 protein_coding missense_variant MODERATE 412A>C Met138Leu
M0064166 EBFMCNOJ_00003 4248 4 Skin 0.15 protein_coding synonymous_variant LOW 312C>T Tyr104Tyr
M0064167 EBFMCNOJ_00003 4293 4 Skin 0.15 protein_coding synonymous_variant LOW 267A>G Glu89Glu
M0064168 EBFMCNOJ_00003 4434 9 Skin 0.33 protein_coding synonymous_variant LOW 126T>C Gly42Gly
M0064169 EBFMCNOJ_00003 4512 4 Skin 0.15 protein_coding synonymous_variant LOW 48A>G Gly16Gly
M0064170 EBFMCNOJ_00002 4650 10 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -2121A>G None
M0064171 EBFMCNOJ_00002 4721 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2192C>T None
M0064172 EBFMCNOJ_00002 4917 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2388G>T None
M0064173 EBFMCNOJ_00002 4981 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2452T>C None
M0064174 EBFMCNOJ_00002 5144 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2615G>A None
M0064175 EBFMCNOJ_00002 5198 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2669G>A None
M0064176 EBFMCNOJ_00002 5201 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2672T>A None
M0064177 EBFMCNOJ_00002 5216 6 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2687T>C None
M0064178 EBFMCNOJ_00002 5255 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2726G>C None
M0064179 EBFMCNOJ_00001 165 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1537C>T None
M0064180 EBFMCNOJ_00001 168 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1534G>A None
M0064181 EBFMCNOJ_00001 258 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1444C>T None
M0064182 EBFMCNOJ_00001 261 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1441T>C None
M0064183 EBFMCNOJ_00001 306 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1396G>T None
M0064184 EBFMCNOJ_00001 315 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1387A>G None
M0064185 EBFMCNOJ_00001 324 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1378A>G None
M0064186 EBFMCNOJ_00001 342 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1360A>G None
M0064187 EBFMCNOJ_00001 357 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1345C>G None
M0064188 EBFMCNOJ_00003 3171 7 Skin 0.26 protein_coding synonymous_variant LOW 1389C>T Pro463Pro
M0064189 EBFMCNOJ_00003 3432 8 Skin 0.30 protein_coding synonymous_variant LOW 1128T>C Arg376Arg
M0064190 EBFMCNOJ_00003 4405 5 Skin 0.19 protein_coding missense_variant MODERATE 155C>G Thr52Ser
M0064191 EBFMCNOJ_00003 4476 4 Skin 0.15 protein_coding synonymous_variant LOW 84C>T Gly28Gly
M0064192 EBFMCNOJ_00002 5133 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2604A>T None
M0064193 EBFMCNOJ_00002 5256 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2727G>A None
M0064194 EBFMCNOJ_00002 5265 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2736T>C None
M0064195 EBFMCNOJ_00001 375 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1327C>T None
M0064196 EBFMCNOJ_00001 759 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -943A>G None
M0064197 EBFMCNOJ_00001 1685 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -17T>C None
M0064198 EBFMCNOJ_00001 2081 8 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *92C>A None
M0064199 EBFMCNOJ_00003 2796 3 Skin 0.11 protein_coding synonymous_variant LOW 1764T>C Arg588Arg
M0064200 EBFMCNOJ_00001 1305 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -397T>C None
M0064201 EBFMCNOJ_00003 2985 6 Skin 0.22 protein_coding synonymous_variant LOW 1575T>C Ile525Ile
M0064202 EBFMCNOJ_00003 3090 4 Skin 0.15 protein_coding synonymous_variant LOW 1470A>G Glu490Glu
M0064203 EBFMCNOJ_00003 4008 8 Skin 0.30 protein_coding synonymous_variant LOW 552A>T Pro184Pro
M0064204 EBFMCNOJ_00003 4239 7 Skin 0.26 protein_coding synonymous_variant LOW 321T>C Tyr107Tyr
M0064205 EBFMCNOJ_00002 4797 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2268C>T None
M0064206 EBFMCNOJ_00002 4867 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2338A>C None
M0064207 EBFMCNOJ_00002 4870 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2341T>C None
M0064208 EBFMCNOJ_00003 2880 4 Skin 0.15 protein_coding synonymous_variant LOW 1680A>G Gln560Gln
M0064209 EBFMCNOJ_00003 3153 4 Skin 0.15 protein_coding synonymous_variant LOW 1407T>C Leu469Leu
M0064210 EBFMCNOJ_00001 1110 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -592C>G None
M0064211 EBFMCNOJ_00001 1113 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -589C>A None
M0064212 EBFMCNOJ_00001 1115 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -587A>G None
M0064213 EBFMCNOJ_00001 1326 7 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -376G>A None
M0064214 EBFMCNOJ_00001 1716 4 Skin 0.15 protein_coding synonymous_variant LOW 15A>G Gln5Gln
M0064215 EBFMCNOJ_00003 3384 4 Skin 0.15 protein_coding synonymous_variant LOW 1176C>T Ile392Ile
M0064216 EBFMCNOJ_00003 3576 4 Skin 0.15 protein_coding synonymous_variant LOW 984C>T Ile328Ile
M0064217 EBFMCNOJ_00002 4825 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2296C>T None
M0064218 EBFMCNOJ_00002 4892 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -2363G>A None
M0064219 EBFMCNOJ_00003 4221 4 Skin 0.15 protein_coding synonymous_variant LOW 339G>C Thr113Thr
M0064220 EBFMCNOJ_00002 4792 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -2263C>A None
M0064221 EBFMCNOJ_00001 1908 3 Skin 0.11 protein_coding synonymous_variant LOW 207T>C Gly69Gly
M0064222 EBFMCNOJ_00001 1990 3 Skin 0.11 protein_coding downstream_gene_variant MODIFIER *1C>T None
M0064223 EBFMCNOJ_00003 3279 4 Skin 0.15 protein_coding synonymous_variant LOW 1281C>T Val427Val
M0064224 EBFMCNOJ_00001 1495 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -207A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term