Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2851
  Reference Plasmid   DP1807004434_bin.11__NODE_332_length_6809_cov_0.919821
  Reference Plasmid Size   6809
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0064235 PGLDMCEF_00006 261 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3691C>G None
M0064236 PGLDMCEF_00006 270 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3682T>G None
M0064237 PGLDMCEF_00006 276 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3676C>T None
M0064238 PGLDMCEF_00006 298 6 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3654T>G None
M0064239 PGLDMCEF_00001 310 6 Skin 0.23 protein_coding synonymous_variant LOW 571C>T Leu191Leu
M0064240 PGLDMCEF_00001 323 6 Skin 0.23 protein_coding synonymous_variant LOW 558G>A Leu186Leu
M0064241 PGLDMCEF_00001 329 6 Skin 0.23 protein_coding synonymous_variant LOW 552C>T Pro184Pro
M0064242 PGLDMCEF_00001 339 6 Skin 0.23 protein_coding missense_variant MODERATE 542G>T Trp181Leu
M0064243 PGLDMCEF_00001 340 6 Skin 0.23 protein_coding missense_variant MODERATE 541T>G Trp181Gly
M0064244 PGLDMCEF_00001 353 6 Skin 0.23 protein_coding synonymous_variant LOW 528T>C Ile176Ile
M0064245 PGLDMCEF_00002 1164 13 Skin 0.50 protein_coding synonymous_variant LOW 570T>C His190His
M0064246 PGLDMCEF_00002 1215 12 Skin 0.46 protein_coding synonymous_variant LOW 519T>C Ser173Ser
M0064247 PGLDMCEF_00002 1221 12 Skin 0.46 protein_coding synonymous_variant LOW 513G>C Gly171Gly
M0064248 PGLDMCEF_00002 1230 12 Skin 0.46 protein_coding synonymous_variant LOW 504C>T Tyr168Tyr
M0064249 PGLDMCEF_00002 1281 11 Skin 0.42 protein_coding synonymous_variant LOW 453T>C Gly151Gly
M0064250 PGLDMCEF_00002 1364 9 Skin 0.35 protein_coding missense_variant MODERATE 370C>T Pro124Ser
M0064251 PGLDMCEF_00002 1722 15 Skin 0.58 protein_coding synonymous_variant LOW 12G>A Ala4Ala
M0064252 PGLDMCEF_00002 1727 3 Skin 0.12 protein_coding synonymous_variant LOW 7C>T Leu3Leu
M0064253 PGLDMCEF_00001 383 4 Skin 0.15 protein_coding synonymous_variant LOW 498T>C Ile166Ile
M0064254 PGLDMCEF_00002 1410 4 Skin 0.15 protein_coding synonymous_variant LOW 324C>T Ala108Ala
M0064255 PGLDMCEF_00005 2578 5 Skin 0.19 protein_coding synonymous_variant LOW 1221C>T Pro407Pro
M0064256 PGLDMCEF_00005 2583 7 Skin 0.27 protein_coding synonymous_variant LOW 1216T>C Leu406Leu
M0064257 PGLDMCEF_00005 2584 7 Skin 0.27 protein_coding synonymous_variant LOW 1215C>T Arg405Arg
M0064258 PGLDMCEF_00005 2602 7 Skin 0.27 protein_coding synonymous_variant LOW 1197A>G Lys399Lys
M0064259 PGLDMCEF_00005 2617 6 Skin 0.23 protein_coding synonymous_variant LOW 1182C>T His394His
M0064260 PGLDMCEF_00005 2620 6 Skin 0.23 protein_coding synonymous_variant LOW 1179G>T Gly393Gly
M0064261 PGLDMCEF_00005 2623 6 Skin 0.23 protein_coding synonymous_variant LOW 1176A>G Glu392Glu
M0064262 PGLDMCEF_00005 2647 5 Skin 0.19 protein_coding synonymous_variant LOW 1152C>T Val384Val
M0064263 PGLDMCEF_00005 2662 5 Skin 0.19 protein_coding synonymous_variant LOW 1137T>C Ala379Ala
M0064264 PGLDMCEF_00005 2668 4 Skin 0.15 protein_coding synonymous_variant LOW 1131G>A Lys377Lys
M0064265 PGLDMCEF_00005 2670 4 Skin 0.15 protein_coding missense_variant MODERATE 1129A>G Lys377Glu
M0064266 PGLDMCEF_00005 2671 4 Skin 0.15 protein_coding synonymous_variant LOW 1128T>C His376His
M0064267 PGLDMCEF_00005 2686 5 Skin 0.19 protein_coding synonymous_variant LOW 1113T>C Ala371Ala
M0064268 PGLDMCEF_00005 2689 5 Skin 0.19 protein_coding synonymous_variant LOW 1110C>T Pro370Pro
M0064269 PGLDMCEF_00005 2702 5 Skin 0.19 protein_coding missense_variant MODERATE 1097G>A Arg366Gln
M0064270 PGLDMCEF_00005 2725 5 Skin 0.19 protein_coding synonymous_variant LOW 1074G>A Glu358Glu
M0064271 PGLDMCEF_00005 2821 4 Skin 0.15 protein_coding synonymous_variant LOW 978T>C Val326Val
M0064272 PGLDMCEF_00005 2827 4 Skin 0.15 protein_coding missense_variant MODERATE 972C>G Asp324Glu
M0064273 PGLDMCEF_00005 2828 4 Skin 0.15 protein_coding missense_variant MODERATE 971A>C Asp324Ala
M0064274 PGLDMCEF_00005 2830 4 Skin 0.15 protein_coding synonymous_variant LOW 969G>A Ala323Ala
M0064275 PGLDMCEF_00005 2833 4 Skin 0.15 protein_coding synonymous_variant LOW 966T>C Asp322Asp
M0064276 PGLDMCEF_00005 2836 4 Skin 0.15 protein_coding synonymous_variant LOW 963A>G Glu321Glu
M0064277 PGLDMCEF_00005 2839 4 Skin 0.15 protein_coding synonymous_variant LOW 960C>T Pro320Pro
M0064278 PGLDMCEF_00005 2842 4 Skin 0.15 protein_coding synonymous_variant LOW 957A>T Arg319Arg
M0064279 PGLDMCEF_00005 2902 4 Skin 0.15 protein_coding synonymous_variant LOW 897A>G Val299Val
M0064280 PGLDMCEF_00005 2911 4 Skin 0.15 protein_coding synonymous_variant LOW 888C>T Ala296Ala
M0064281 PGLDMCEF_00005 3004 4 Skin 0.15 protein_coding synonymous_variant LOW 795A>G Val265Val
M0064282 PGLDMCEF_00005 3070 4 Skin 0.15 protein_coding synonymous_variant LOW 729C>G Pro243Pro
M0064283 PGLDMCEF_00005 3079 4 Skin 0.15 protein_coding synonymous_variant LOW 720C>T Pro240Pro
M0064284 PGLDMCEF_00005 3085 4 Skin 0.15 protein_coding synonymous_variant LOW 714T>G Gly238Gly
M0064285 PGLDMCEF_00005 3094 3 Skin 0.12 protein_coding synonymous_variant LOW 705G>C Leu235Leu
M0064286 PGLDMCEF_00005 3109 3 Skin 0.12 protein_coding synonymous_variant LOW 690T>C Gly230Gly
M0064287 PGLDMCEF_00005 3169 4 Skin 0.15 protein_coding synonymous_variant LOW 630G>C Val210Val
M0064288 PGLDMCEF_00005 3205 4 Skin 0.15 protein_coding synonymous_variant LOW 594T>C Cys198Cys
M0064289 PGLDMCEF_00005 3211 4 Skin 0.15 protein_coding missense_variant MODERATE 588C>G Ser196Arg
M0064290 PGLDMCEF_00005 3212 4 Skin 0.15 protein_coding missense_variant MODERATE 587G>C Ser196Thr
M0064291 PGLDMCEF_00005 3213 4 Skin 0.15 protein_coding missense_variant MODERATE 586A>T Ser196Cys
M0064292 PGLDMCEF_00005 3214 4 Skin 0.15 protein_coding synonymous_variant LOW 585G>C Gly195Gly
M0064293 PGLDMCEF_00005 3217 4 Skin 0.15 protein_coding synonymous_variant LOW 582C>T Ser194Ser
M0064294 PGLDMCEF_00005 3226 4 Skin 0.15 protein_coding synonymous_variant LOW 573G>A Ala191Ala
M0064295 PGLDMCEF_00005 3241 4 Skin 0.15 protein_coding synonymous_variant LOW 558A>G Val186Val
M0064296 PGLDMCEF_00005 3271 4 Skin 0.15 protein_coding synonymous_variant LOW 528T>C Arg176Arg
M0064297 PGLDMCEF_00005 3282 4 Skin 0.15 protein_coding missense_variant MODERATE 517G>A Ala173Thr
M0064298 PGLDMCEF_00005 3325 5 Skin 0.19 protein_coding synonymous_variant LOW 474A>G Ala158Ala
M0064299 PGLDMCEF_00005 3538 5 Skin 0.19 protein_coding synonymous_variant LOW 261G>A Lys87Lys
M0064300 PGLDMCEF_00005 3583 7 Skin 0.27 protein_coding synonymous_variant LOW 216C>T Thr72Thr
M0064301 PGLDMCEF_00005 3586 7 Skin 0.27 protein_coding synonymous_variant LOW 213G>A Gln71Gln
M0064302 PGLDMCEF_00005 3587 7 Skin 0.27 protein_coding missense_variant MODERATE 212A>G Gln71Arg
M0064303 PGLDMCEF_00005 3590 4 Skin 0.15 protein_coding missense_variant MODERATE 209C>T Thr70Ile
M0064304 PGLDMCEF_00005 3661 4 Skin 0.15 protein_coding synonymous_variant LOW 138G>A Lys46Lys
M0064305 PGLDMCEF_00005 3672 4 Skin 0.15 protein_coding missense_variant MODERATE 127G>A Ala43Thr
M0064306 PGLDMCEF_00005 3676 4 Skin 0.15 protein_coding synonymous_variant LOW 123A>G Lys41Lys
M0064307 PGLDMCEF_00005 3682 4 Skin 0.15 protein_coding synonymous_variant LOW 117C>G Leu39Leu
M0064308 PGLDMCEF_00005 3696 4 Skin 0.15 protein_coding missense_variant MODERATE 103A>C Ile35Leu
M0064309 PGLDMCEF_00001 475 3 Skin 0.12 protein_coding synonymous_variant LOW 406T>C Leu136Leu
M0064310 PGLDMCEF_00002 975 6 Skin 0.23 protein_coding synonymous_variant LOW 759G>T Val253Val
M0064311 PGLDMCEF_00002 977 6 Skin 0.23 protein_coding missense_variant MODERATE 757G>C Val253Leu
M0064312 PGLDMCEF_00002 1480 4 Skin 0.15 protein_coding missense_variant MODERATE 254G>C Gly85Ala
M0064313 PGLDMCEF_00003 1989 10 Skin 0.38 protein_coding missense_variant MODERATE 59G>A Arg20Lys
M0064314 PGLDMCEF_00005 2446 3 Skin 0.12 protein_coding synonymous_variant LOW 1353A>G Glu451Glu
M0064315 PGLDMCEF_00005 3454 8 Skin 0.31 protein_coding synonymous_variant LOW 345C>T Gly115Gly
M0064316 PGLDMCEF_00008 5153 5 Skin 0.19 protein_coding synonymous_variant LOW 30G>T Gly10Gly
M0064317 PGLDMCEF_00008 5157 5 Skin 0.19 protein_coding missense_variant MODERATE 34C>T Leu12Phe
M0064318 PGLDMCEF_00008 5161 5 Skin 0.19 protein_coding missense_variant MODERATE 38C>T Ala13Val
M0064319 PGLDMCEF_00004 2328 7 Skin 0.27 protein_coding missense_variant MODERATE 83C>G Ser28Trp
M0064320 PGLDMCEF_00004 2329 7 Skin 0.27 protein_coding missense_variant MODERATE 82T>G Ser28Ala
M0064321 PGLDMCEF_00004 2340 7 Skin 0.27 protein_coding missense_variant MODERATE 71A>G Lys24Arg
M0064322 PGLDMCEF_00005 2437 6 Skin 0.23 protein_coding synonymous_variant LOW 1362A>G Glu454Glu
M0064323 PGLDMCEF_00005 3346 5 Skin 0.19 protein_coding synonymous_variant LOW 453C>T Pro151Pro
M0064324 PGLDMCEF_00005 3349 5 Skin 0.19 protein_coding synonymous_variant LOW 450C>G Arg150Arg
M0064325 PGLDMCEF_00005 3352 5 Skin 0.19 protein_coding synonymous_variant LOW 447C>G Gly149Gly
M0064326 PGLDMCEF_00005 3355 5 Skin 0.19 protein_coding synonymous_variant LOW 444T>C Ile148Ile
M0064327 PGLDMCEF_00005 3388 5 Skin 0.19 protein_coding synonymous_variant LOW 411T>C Tyr137Tyr
M0064328 PGLDMCEF_00005 3619 5 Skin 0.19 protein_coding synonymous_variant LOW 180C>T Asp60Asp
M0064329 PGLDMCEF_00002 1242 4 Skin 0.15 protein_coding synonymous_variant LOW 492G>A Leu164Leu
M0064330 PGLDMCEF_00004 2201 6 Skin 0.23 protein_coding synonymous_variant LOW 210C>T Ile70Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term