Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2859
  Reference Plasmid   DP1807004435_bin.8__NODE_2024_length_3602_cov_0.966315
  Reference Plasmid Size   3602
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0064426 OJNADDHN_00003 40 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1592C>G None
M0064427 OJNADDHN_00001 133 4 Skin 0.80 protein_coding missense_variant MODERATE 911G>A Gly304Glu
M0064428 OJNADDHN_00001 137 3 Skin 0.60 protein_coding missense_variant MODERATE 907A>G Thr303Ala
M0064429 OJNADDHN_00001 258 3 Skin 0.60 protein_coding synonymous_variant LOW 786C>G Arg262Arg
M0064430 OJNADDHN_00001 743 3 Skin 0.60 protein_coding synonymous_variant LOW 301T>C Leu101Leu
M0064431 OJNADDHN_00001 801 3 Skin 0.60 protein_coding synonymous_variant LOW 243T>C Gly81Gly
M0064432 OJNADDHN_00001 909 3 Skin 0.60 protein_coding synonymous_variant LOW 135G>A Gly45Gly
M0064433 OJNADDHN_00001 935 3 Skin 0.60 protein_coding missense_variant MODERATE 109A>G Ser37Gly
M0064434 OJNADDHN_00001 1017 3 Skin 0.60 protein_coding synonymous_variant LOW 27C>G Pro9Pro
M0064435 OJNADDHN_00001 1569 4 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -526G>A None
M0064436 OJNADDHN_00001 1577 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -534G>A None
M0064437 OJNADDHN_00001 1585 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -542C>A None
M0064438 OJNADDHN_00001 1590 4 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -547G>T None
M0064439 OJNADDHN_00001 1600 4 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -557A>T None
M0064440 OJNADDHN_00001 1602 4 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -559T>G None
M0064441 OJNADDHN_00001 1619 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -576A>C None
M0064442 OJNADDHN_00003 1662 4 Skin 0.80 protein_coding missense_variant MODERATE 31A>G Thr11Ala
M0064443 OJNADDHN_00003 1924 3 Skin 0.60 protein_coding missense_variant MODERATE 293T>G Val98Gly
M0064444 OJNADDHN_00003 2079 3 Skin 0.60 protein_coding missense_variant MODERATE 448T>C Trp150Arg
M0064445 OJNADDHN_00003 2243 3 Skin 0.60 protein_coding synonymous_variant LOW 612T>G Ala204Ala
M0064446 OJNADDHN_00003 2723 3 Skin 0.60 protein_coding synonymous_variant LOW 1092G>C Thr364Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term