Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2873
  Reference Plasmid   DP1807004558_bin.3__NODE_84_length_9235_cov_0.608800
  Reference Plasmid Size   9235
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0064892 JIAHDMFO_00001 512 8 Skin 0.89 protein_coding synonymous_variant LOW 786T>C Ala262Ala
M0064893 JIAHDMFO_00001 719 5 Skin 0.56 protein_coding synonymous_variant LOW 579A>G Pro193Pro
M0064894 JIAHDMFO_00001 844 5 Skin 0.56 protein_coding synonymous_variant LOW 454T>C Leu152Leu
M0064895 JIAHDMFO_00001 905 8 Skin 0.89 protein_coding synonymous_variant LOW 393A>G Ala131Ala
M0064896 JIAHDMFO_00001 1052 5 Skin 0.56 protein_coding synonymous_variant LOW 246T>C Ser82Ser
M0064897 JIAHDMFO_00001 1106 7 Skin 0.78 protein_coding synonymous_variant LOW 192T>C Phe64Phe
M0064898 JIAHDMFO_00002 1728 8 Skin 0.89 protein_coding missense_variant MODERATE 233T>C Ile78Thr
M0064899 JIAHDMFO_00002 1736 8 Skin 0.89 protein_coding missense_variant MODERATE 241C>G Pro81Ala
M0064900 JIAHDMFO_00002 1814 4 Skin 0.44 protein_coding missense_variant MODERATE 319T>C Phe107Leu
M0064901 JIAHDMFO_00002 1825 4 Skin 0.44 protein_coding synonymous_variant LOW 330G>C Thr110Thr
M0064902 JIAHDMFO_00002 1828 4 Skin 0.44 protein_coding synonymous_variant LOW 333G>T Ala111Ala
M0064903 JIAHDMFO_00002 1831 4 Skin 0.44 protein_coding synonymous_variant LOW 336C>G Leu112Leu
M0064904 JIAHDMFO_00002 1832 4 Skin 0.44 protein_coding missense_variant MODERATE 337T>G Ser113Ala
M0064905 JIAHDMFO_00002 1864 4 Skin 0.44 protein_coding synonymous_variant LOW 369T>C Gly123Gly
M0064906 JIAHDMFO_00002 1867 4 Skin 0.44 protein_coding synonymous_variant LOW 372C>T Ile124Ile
M0064907 JIAHDMFO_00002 2529 3 Skin 0.33 protein_coding missense_variant MODERATE 1034T>C Val345Ala
M0064908 JIAHDMFO_00002 2530 3 Skin 0.33 protein_coding synonymous_variant LOW 1035A>G Val345Val
M0064909 JIAHDMFO_00002 2549 3 Skin 0.33 protein_coding missense_variant MODERATE 1054A>G Ile352Val
M0064910 JIAHDMFO_00002 2551 3 Skin 0.33 protein_coding missense_variant MODERATE 1056C>G Ile352Met
M0064911 JIAHDMFO_00002 2554 3 Skin 0.33 protein_coding synonymous_variant LOW 1059T>G Pro353Pro
M0064912 JIAHDMFO_00002 2575 3 Skin 0.33 protein_coding synonymous_variant LOW 1080A>T Gly360Gly
M0064913 JIAHDMFO_00002 2584 4 Skin 0.44 protein_coding synonymous_variant LOW 1089G>C Thr363Thr
M0064914 JIAHDMFO_00003 2929 6 Skin 0.67 protein_coding synonymous_variant LOW 90C>G Leu30Leu
M0064915 JIAHDMFO_00003 3195 3 Skin 0.33 protein_coding missense_variant MODERATE 356G>A Ser119Asn
M0064916 JIAHDMFO_00003 3835 6 Skin 0.67 protein_coding synonymous_variant LOW 996G>C Leu332Leu
M0064917 JIAHDMFO_00003 3844 4 Skin 0.44 protein_coding synonymous_variant LOW 1005C>T Gly335Gly
M0064918 JIAHDMFO_00003 3925 6 Skin 0.67 protein_coding synonymous_variant LOW 1086C>G Gly362Gly
M0064919 JIAHDMFO_00004 4390 3 Skin 0.33 protein_coding synonymous_variant LOW 136T>C Leu46Leu
M0064920 JIAHDMFO_00004 4407 4 Skin 0.44 protein_coding synonymous_variant LOW 153C>G Leu51Leu
M0064921 JIAHDMFO_00004 4419 4 Skin 0.44 protein_coding synonymous_variant LOW 165T>C Phe55Phe
M0064922 JIAHDMFO_00004 4428 4 Skin 0.44 protein_coding synonymous_variant LOW 174T>C Tyr58Tyr
M0064923 JIAHDMFO_00004 4437 4 Skin 0.44 protein_coding synonymous_variant LOW 183G>A Pro61Pro
M0064924 JIAHDMFO_00004 4449 3 Skin 0.33 protein_coding synonymous_variant LOW 195G>A Lys65Lys
M0064925 JIAHDMFO_00004 4472 4 Skin 0.44 protein_coding missense_variant MODERATE 218T>C Val73Ala
M0064926 JIAHDMFO_00004 4476 4 Skin 0.44 protein_coding synonymous_variant LOW 222C>G Ala74Ala
M0064927 JIAHDMFO_00004 4479 4 Skin 0.44 protein_coding synonymous_variant LOW 225C>T Ser75Ser
M0064928 JIAHDMFO_00004 4482 4 Skin 0.44 protein_coding synonymous_variant LOW 228C>G Gly76Gly
M0064929 JIAHDMFO_00004 4509 4 Skin 0.44 protein_coding synonymous_variant LOW 255T>C Gly85Gly
M0064930 JIAHDMFO_00004 4945 3 Skin 0.33 protein_coding missense_variant MODERATE 691A>G Ile231Val
M0064931 JIAHDMFO_00004 5148 5 Skin 0.56 protein_coding synonymous_variant LOW 894C>T Phe298Phe
M0064932 JIAHDMFO_00001 5645 5 Skin 0.56 protein_coding upstream_gene_variant MODIFIER -4348A>G None
M0064933 JIAHDMFO_00005 6012 5 Skin 0.56 protein_coding synonymous_variant LOW 186C>T Arg62Arg
M0064934 JIAHDMFO_00005 6027 5 Skin 0.56 protein_coding synonymous_variant LOW 201G>C Pro67Pro
M0064935 JIAHDMFO_00005 6033 5 Skin 0.56 protein_coding synonymous_variant LOW 207C>G Ala69Ala
M0064936 JIAHDMFO_00006 7075 5 Skin 0.56 protein_coding missense_variant MODERATE 170G>A Arg57Gln
M0064937 JIAHDMFO_00007 7862 4 Skin 0.44 protein_coding synonymous_variant LOW 876G>C Gly292Gly
M0064938 JIAHDMFO_00007 8588 4 Skin 0.44 protein_coding synonymous_variant LOW 150G>C Leu50Leu
M0064939 JIAHDMFO_00007 8708 3 Skin 0.33 protein_coding missense_variant MODERATE 30C>G His10Gln
M0064940 JIAHDMFO_00007 8716 3 Skin 0.33 protein_coding missense_variant MODERATE 22A>C Ile8Leu
M0064941 JIAHDMFO_00002 2266 3 Skin 0.33 protein_coding synonymous_variant LOW 771G>A Ala257Ala
M0064942 JIAHDMFO_00005 5967 3 Skin 0.33 protein_coding missense_variant MODERATE 141A>C Lys47Asn
M0064943 JIAHDMFO_00005 5970 3 Skin 0.33 protein_coding synonymous_variant LOW 144T>C Phe48Phe
M0064944 JIAHDMFO_00005 5979 3 Skin 0.33 protein_coding synonymous_variant LOW 153G>C Val51Val
M0064945 JIAHDMFO_00007 7415 3 Skin 0.33 protein_coding missense_variant MODERATE 1323G>C Leu441Phe
M0064946 JIAHDMFO_00007 7417 3 Skin 0.33 protein_coding synonymous_variant LOW 1321T>C Leu441Leu
M0064947 JIAHDMFO_00003 3514 3 Skin 0.33 protein_coding synonymous_variant LOW 675C>T Phe225Phe
M0064948 JIAHDMFO_00003 3515 3 Skin 0.33 protein_coding missense_variant MODERATE 676T>G Ser226Ala
M0064949 JIAHDMFO_00003 3562 4 Skin 0.44 protein_coding synonymous_variant LOW 723C>G Ala241Ala
M0064950 JIAHDMFO_00003 3574 3 Skin 0.33 protein_coding synonymous_variant LOW 735C>T Phe245Phe
M0064951 JIAHDMFO_00003 3577 3 Skin 0.33 protein_coding synonymous_variant LOW 738T>C Thr246Thr
M0064952 JIAHDMFO_00002 2347 3 Skin 0.33 protein_coding synonymous_variant LOW 852C>T Gly284Gly
M0064953 JIAHDMFO_00002 2351 3 Skin 0.33 protein_coding missense_variant MODERATE 856G>C Val286Leu
M0064954 JIAHDMFO_00002 2354 3 Skin 0.33 protein_coding missense_variant MODERATE 859A>C Met287Leu
M0064955 JIAHDMFO_00002 2356 3 Skin 0.33 protein_coding missense_variant MODERATE 861G>C Met287Ile
M0064956 JIAHDMFO_00002 2593 3 Skin 0.33 protein_coding synonymous_variant LOW 1098T>C Ile366Ile
M0064957 JIAHDMFO_00002 2600 3 Skin 0.33 protein_coding missense_variant MODERATE 1105A>T Ile369Phe
M0064958 JIAHDMFO_00002 2601 3 Skin 0.33 protein_coding missense_variant MODERATE 1106T>C Ile369Thr
M0064959 JIAHDMFO_00003 3752 3 Skin 0.33 protein_coding missense_variant MODERATE 913A>T Thr305Ser
M0064960 JIAHDMFO_00003 3766 3 Skin 0.33 protein_coding synonymous_variant LOW 927G>C Leu309Leu
M0064961 JIAHDMFO_00003 3773 3 Skin 0.33 protein_coding synonymous_variant LOW 934C>T Leu312Leu
M0064962 JIAHDMFO_00003 3790 3 Skin 0.33 protein_coding synonymous_variant LOW 951G>C Leu317Leu
M0064963 JIAHDMFO_00003 3793 3 Skin 0.33 protein_coding synonymous_variant LOW 954C>T Gly318Gly
M0064964 JIAHDMFO_00003 3955 3 Skin 0.33 protein_coding synonymous_variant LOW 1116C>T Ile372Ile
M0064965 JIAHDMFO_00003 4162 3 Skin 0.33 protein_coding synonymous_variant LOW 1323C>T Leu441Leu
M0064966 JIAHDMFO_00003 4204 3 Skin 0.33 protein_coding synonymous_variant LOW 1365T>C Ala455Ala
M0064967 JIAHDMFO_00005 6228 3 Skin 0.33 protein_coding synonymous_variant LOW 402C>T Gly134Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term