Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2882
  Reference Plasmid   DP1808006646_bin.4__NODE_105_length_11070_cov_4.498496
  Reference Plasmid Size   11070
  Reference Plasmid GC Content   0.46
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0065238 PHMFFHMH_00005 3731 3 Skin 0.13 protein_coding missense_variant MODERATE 1168G>C Gly390Arg
M0065239 PHMFFHMH_00005 3900 5 Skin 0.21 protein_coding synonymous_variant LOW 999C>G Arg333Arg
M0065240 PHMFFHMH_00005 3906 3 Skin 0.13 protein_coding synonymous_variant LOW 993G>A Leu331Leu
M0065241 PHMFFHMH_00005 3951 8 Skin 0.33 protein_coding synonymous_variant LOW 948T>C Ala316Ala
M0065242 PHMFFHMH_00005 3959 6 Skin 0.25 protein_coding synonymous_variant LOW 940T>C Leu314Leu
M0065243 PHMFFHMH_00005 4011 4 Skin 0.17 protein_coding synonymous_variant LOW 888T>C Ala296Ala
M0065244 PHMFFHMH_00005 4014 4 Skin 0.17 protein_coding synonymous_variant LOW 885T>C Phe295Phe
M0065245 PHMFFHMH_00005 4029 13 Skin 0.54 protein_coding synonymous_variant LOW 870A>G Leu290Leu
M0065246 PHMFFHMH_00005 4043 7 Skin 0.29 protein_coding missense_variant MODERATE 856A>C Ser286Arg
M0065247 PHMFFHMH_00005 4044 11 Skin 0.46 protein_coding synonymous_variant LOW 855G>T Leu285Leu
M0065248 PHMFFHMH_00005 4080 7 Skin 0.29 protein_coding synonymous_variant LOW 819G>A Gly273Gly
M0065249 PHMFFHMH_00005 4107 9 Skin 0.38 protein_coding synonymous_variant LOW 792G>A Arg264Arg
M0065250 PHMFFHMH_00005 4110 9 Skin 0.38 protein_coding synonymous_variant LOW 789G>T Gly263Gly
M0065251 PHMFFHMH_00005 4182 3 Skin 0.13 protein_coding synonymous_variant LOW 717C>G Pro239Pro
M0065252 PHMFFHMH_00005 4226 4 Skin 0.17 protein_coding synonymous_variant LOW 673C>T Leu225Leu
M0065253 PHMFFHMH_00005 4264 6 Skin 0.25 protein_coding missense_variant MODERATE 635G>A Ser212Asn
M0065254 PHMFFHMH_00005 4269 12 Skin 0.50 protein_coding synonymous_variant LOW 630A>G Thr210Thr
M0065255 PHMFFHMH_00005 4275 8 Skin 0.33 protein_coding synonymous_variant LOW 624T>C Gly208Gly
M0065256 PHMFFHMH_00005 4284 6 Skin 0.25 protein_coding synonymous_variant LOW 615A>G Lys205Lys
M0065257 PHMFFHMH_00005 4288 4 Skin 0.17 protein_coding missense_variant MODERATE 611A>G Asp204Gly
M0065258 PHMFFHMH_00005 4312 6 Skin 0.25 protein_coding missense_variant MODERATE 587A>G Asp196Gly
M0065259 PHMFFHMH_00005 4331 3 Skin 0.13 protein_coding synonymous_variant LOW 568C>T Leu190Leu
M0065260 PHMFFHMH_00005 4362 3 Skin 0.13 protein_coding synonymous_variant LOW 537A>G Leu179Leu
M0065261 PHMFFHMH_00005 4364 3 Skin 0.13 protein_coding missense_variant MODERATE 535T>A Leu179Ile
M0065262 PHMFFHMH_00005 4536 3 Skin 0.13 protein_coding synonymous_variant LOW 363T>C Phe121Phe
M0065263 PHMFFHMH_00005 4543 3 Skin 0.13 protein_coding missense_variant MODERATE 356C>A Ala119Glu
M0065264 PHMFFHMH_00005 4581 4 Skin 0.17 protein_coding synonymous_variant LOW 318C>T Ala106Ala
M0065265 PHMFFHMH_00005 4584 3 Skin 0.13 protein_coding synonymous_variant LOW 315A>G Gln105Gln
M0065266 PHMFFHMH_00005 4644 5 Skin 0.21 protein_coding synonymous_variant LOW 255T>A Ala85Ala
M0065267 PHMFFHMH_00005 4650 3 Skin 0.13 protein_coding synonymous_variant LOW 249C>T Gly83Gly
M0065268 PHMFFHMH_00005 4671 6 Skin 0.25 protein_coding synonymous_variant LOW 228T>C Pro76Pro
M0065269 PHMFFHMH_00005 4695 5 Skin 0.21 protein_coding synonymous_variant LOW 204G>A Ala68Ala
M0065270 PHMFFHMH_00005 4702 12 Skin 0.50 protein_coding missense_variant MODERATE 197G>A Arg66Gln
M0065271 PHMFFHMH_00005 4797 11 Skin 0.46 protein_coding synonymous_variant LOW 102A>G Glu34Glu
M0065272 PHMFFHMH_00005 4836 12 Skin 0.50 protein_coding synonymous_variant LOW 63G>T Thr21Thr
M0065273 PHMFFHMH_00005 4848 6 Skin 0.25 protein_coding synonymous_variant LOW 51T>C Arg17Arg
M0065274 PHMFFHMH_00005 4874 5 Skin 0.21 protein_coding synonymous_variant LOW 25T>C Leu9Leu
M0065275 PHMFFHMH_00002 4925 11 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -3400G>C None
M0065276 PHMFFHMH_00006 4958 5 Skin 0.21 protein_coding synonymous_variant LOW 1053T>C Arg351Arg
M0065277 PHMFFHMH_00006 4976 7 Skin 0.29 protein_coding synonymous_variant LOW 1035T>C Ile345Ile
M0065278 PHMFFHMH_00006 5011 5 Skin 0.21 protein_coding missense_variant MODERATE 1000A>G Thr334Ala
M0065279 PHMFFHMH_00006 5031 5 Skin 0.21 protein_coding missense_variant MODERATE 980C>G Ala327Gly
M0065280 PHMFFHMH_00006 5039 4 Skin 0.17 protein_coding missense_variant MODERATE 972A>C Leu324Phe
M0065281 PHMFFHMH_00006 5041 4 Skin 0.17 protein_coding synonymous_variant LOW 970T>C Leu324Leu
M0065282 PHMFFHMH_00006 5060 5 Skin 0.21 protein_coding synonymous_variant LOW 951T>C Gly317Gly
M0065283 PHMFFHMH_00006 5104 11 Skin 0.46 protein_coding missense_variant MODERATE 907C>G Pro303Ala
M0065284 PHMFFHMH_00006 5122 3 Skin 0.13 protein_coding synonymous_variant LOW 889C>T Leu297Leu
M0065285 PHMFFHMH_00006 5133 10 Skin 0.42 protein_coding missense_variant MODERATE 878C>T Thr293Met
M0065286 PHMFFHMH_00006 5150 10 Skin 0.42 protein_coding synonymous_variant LOW 861G>A Lys287Lys
M0065287 PHMFFHMH_00006 5211 4 Skin 0.17 protein_coding missense_variant MODERATE 800A>C Glu267Ala
M0065288 PHMFFHMH_00006 5222 10 Skin 0.42 protein_coding synonymous_variant LOW 789A>G Glu263Glu
M0065289 PHMFFHMH_00006 5288 5 Skin 0.21 protein_coding synonymous_variant LOW 723G>A Thr241Thr
M0065290 PHMFFHMH_00006 5297 5 Skin 0.21 protein_coding synonymous_variant LOW 714G>A Val238Val
M0065291 PHMFFHMH_00006 5329 4 Skin 0.17 protein_coding synonymous_variant LOW 682T>C Leu228Leu
M0065292 PHMFFHMH_00006 5341 4 Skin 0.17 protein_coding synonymous_variant LOW 670C>T Leu224Leu
M0065293 PHMFFHMH_00006 5348 5 Skin 0.21 protein_coding synonymous_variant LOW 663T>C Ala221Ala
M0065294 PHMFFHMH_00006 5687 5 Skin 0.21 protein_coding synonymous_variant LOW 324G>A Leu108Leu
M0065295 PHMFFHMH_00006 5702 6 Skin 0.25 protein_coding synonymous_variant LOW 309C>A Ala103Ala
M0065296 PHMFFHMH_00006 5707 6 Skin 0.25 protein_coding missense_variant MODERATE 304G>A Glu102Lys
M0065297 PHMFFHMH_00006 5734 3 Skin 0.13 protein_coding missense_variant MODERATE 277C>G His93Asp
M0065298 PHMFFHMH_00006 5737 3 Skin 0.13 protein_coding missense_variant MODERATE 274A>C Lys92Gln
M0065299 PHMFFHMH_00006 5783 6 Skin 0.25 protein_coding synonymous_variant LOW 228A>G Gln76Gln
M0065300 PHMFFHMH_00006 5869 6 Skin 0.25 protein_coding missense_variant MODERATE 142T>C Ser48Pro
M0065301 PHMFFHMH_00006 5897 3 Skin 0.13 protein_coding synonymous_variant LOW 114C>G Pro38Pro
M0065302 PHMFFHMH_00006 5905 6 Skin 0.25 protein_coding missense_variant MODERATE 106G>A Asp36Asn
M0065303 PHMFFHMH_00006 5942 4 Skin 0.17 protein_coding missense_variant MODERATE 69C>G Asp23Glu
M0065304 PHMFFHMH_00006 5990 4 Skin 0.17 protein_coding synonymous_variant LOW 21C>T Asn7Asn
M0065305 PHMFFHMH_00002 6047 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4522A>C None
M0065306 PHMFFHMH_00007 6467 4 Skin 0.17 protein_coding synonymous_variant LOW 798G>A Glu266Glu
M0065307 PHMFFHMH_00004 2790 18 Skin 0.75 protein_coding synonymous_variant LOW 801A>G Leu267Leu
M0065308 PHMFFHMH_00004 2847 19 Skin 0.79 protein_coding synonymous_variant LOW 744A>G Ala248Ala
M0065309 PHMFFHMH_00004 2928 14 Skin 0.58 protein_coding synonymous_variant LOW 663T>C Asn221Asn
M0065310 PHMFFHMH_00004 2946 12 Skin 0.50 protein_coding synonymous_variant LOW 645G>A Leu215Leu
M0065311 PHMFFHMH_00004 2948 12 Skin 0.50 protein_coding synonymous_variant LOW 643T>C Leu215Leu
M0065312 PHMFFHMH_00004 2999 4 Skin 0.17 protein_coding missense_variant MODERATE 592G>A Ala198Thr
M0065313 PHMFFHMH_00004 3014 6 Skin 0.25 protein_coding missense_variant MODERATE 577G>T Val193Leu
M0065314 PHMFFHMH_00004 3018 3 Skin 0.13 protein_coding synonymous_variant LOW 573G>A Pro191Pro
M0065315 PHMFFHMH_00004 3039 3 Skin 0.13 protein_coding synonymous_variant LOW 552G>A Leu184Leu
M0065316 PHMFFHMH_00004 3064 6 Skin 0.25 protein_coding missense_variant MODERATE 527A>G Gln176Arg
M0065317 PHMFFHMH_00004 3098 9 Skin 0.38 protein_coding missense_variant MODERATE 493G>A Ala165Thr
M0065318 PHMFFHMH_00004 3120 14 Skin 0.58 protein_coding synonymous_variant LOW 471T>C His157His
M0065319 PHMFFHMH_00004 3242 6 Skin 0.25 protein_coding missense_variant MODERATE 349A>C Ile117Leu
M0065320 PHMFFHMH_00004 3256 8 Skin 0.33 protein_coding missense_variant MODERATE 335A>C Glu112Ala
M0065321 PHMFFHMH_00004 3258 8 Skin 0.33 protein_coding synonymous_variant LOW 333C>A Ile111Ile
M0065322 PHMFFHMH_00004 3260 8 Skin 0.33 protein_coding missense_variant MODERATE 331A>G Ile111Val
M0065323 PHMFFHMH_00004 3309 14 Skin 0.58 protein_coding synonymous_variant LOW 282G>C Val94Val
M0065324 PHMFFHMH_00004 3339 9 Skin 0.38 protein_coding synonymous_variant LOW 252C>T Thr84Thr
M0065325 PHMFFHMH_00004 3351 7 Skin 0.29 protein_coding synonymous_variant LOW 240C>T Leu80Leu
M0065326 PHMFFHMH_00004 3389 6 Skin 0.25 protein_coding missense_variant MODERATE 202C>T Arg68Cys
M0065327 PHMFFHMH_00004 3390 6 Skin 0.25 protein_coding synonymous_variant LOW 201G>A Gln67Gln
M0065328 PHMFFHMH_00004 3486 4 Skin 0.17 protein_coding synonymous_variant LOW 105A>G Gln35Gln
M0065329 PHMFFHMH_00004 3531 11 Skin 0.46 protein_coding synonymous_variant LOW 60A>G Lys20Lys
M0065330 PHMFFHMH_00004 3546 11 Skin 0.46 protein_coding missense_variant MODERATE 45A>C Lys15Asn
M0065331 PHMFFHMH_00004 3564 13 Skin 0.54 protein_coding synonymous_variant LOW 27G>C Ala9Ala
M0065332 PHMFFHMH_00002 3593 14 Skin 0.58 protein_coding upstream_gene_variant MODIFIER -2068C>T None
M0065333 PHMFFHMH_00002 3650 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2125T>A None
M0065334 PHMFFHMH_00002 3655 13 Skin 0.54 protein_coding upstream_gene_variant MODIFIER -2130C>G None
M0065335 PHMFFHMH_00002 3656 7 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2131A>C None
M0065336 PHMFFHMH_00005 3702 7 Skin 0.29 protein_coding synonymous_variant LOW 1197G>T Pro399Pro
M0065337 PHMFFHMH_00005 3765 7 Skin 0.29 protein_coding synonymous_variant LOW 1134A>G Glu378Glu
M0065338 PHMFFHMH_00005 4064 11 Skin 0.46 protein_coding missense_variant MODERATE 835G>C Glu279Gln
M0065339 PHMFFHMH_00005 4065 11 Skin 0.46 protein_coding synonymous_variant LOW 834A>G Leu278Leu
M0065340 PHMFFHMH_00005 4193 11 Skin 0.46 protein_coding missense_variant MODERATE 706A>G Ile236Val
M0065341 PHMFFHMH_00005 4215 5 Skin 0.21 protein_coding synonymous_variant LOW 684C>A Gly228Gly
M0065342 PHMFFHMH_00005 4329 3 Skin 0.13 protein_coding synonymous_variant LOW 570G>A Leu190Leu
M0065343 PHMFFHMH_00005 4335 7 Skin 0.29 protein_coding synonymous_variant LOW 564G>A Ala188Ala
M0065344 PHMFFHMH_00005 4379 6 Skin 0.25 protein_coding synonymous_variant LOW 520T>C Leu174Leu
M0065345 PHMFFHMH_00005 4704 5 Skin 0.21 protein_coding synonymous_variant LOW 195C>T Thr65Thr
M0065346 PHMFFHMH_00005 4833 6 Skin 0.25 protein_coding synonymous_variant LOW 66G>T Ala22Ala
M0065347 PHMFFHMH_00006 5075 8 Skin 0.33 protein_coding synonymous_variant LOW 936C>T His312His
M0065348 PHMFFHMH_00006 5084 8 Skin 0.33 protein_coding synonymous_variant LOW 927T>C Tyr309Tyr
M0065349 PHMFFHMH_00006 5087 6 Skin 0.25 protein_coding synonymous_variant LOW 924T>C Gly308Gly
M0065350 PHMFFHMH_00006 5099 8 Skin 0.33 protein_coding synonymous_variant LOW 912A>T Ser304Ser
M0065351 PHMFFHMH_00006 5102 8 Skin 0.33 protein_coding synonymous_variant LOW 909G>C Pro303Pro
M0065352 PHMFFHMH_00006 5135 7 Skin 0.29 protein_coding synonymous_variant LOW 876G>C Gly292Gly
M0065353 PHMFFHMH_00006 5191 5 Skin 0.21 protein_coding missense_variant MODERATE 820G>A Ala274Thr
M0065354 PHMFFHMH_00006 5210 7 Skin 0.29 protein_coding synonymous_variant LOW 801A>G Glu267Glu
M0065355 PHMFFHMH_00006 5221 6 Skin 0.25 protein_coding missense_variant MODERATE 790G>A Ala264Thr
M0065356 PHMFFHMH_00006 5489 4 Skin 0.17 protein_coding synonymous_variant LOW 522A>G Gly174Gly
M0065357 PHMFFHMH_00006 5510 3 Skin 0.13 protein_coding synonymous_variant LOW 501C>T Val167Val
M0065358 PHMFFHMH_00006 5594 3 Skin 0.13 protein_coding synonymous_variant LOW 417A>C Ala139Ala
M0065359 PHMFFHMH_00006 5599 5 Skin 0.21 protein_coding missense_variant MODERATE 412A>G Met138Val
M0065360 PHMFFHMH_00006 5609 5 Skin 0.21 protein_coding missense_variant MODERATE 402G>T Gln134His
M0065361 PHMFFHMH_00006 5651 4 Skin 0.17 protein_coding synonymous_variant LOW 360G>A Leu120Leu
M0065362 PHMFFHMH_00006 5765 3 Skin 0.13 protein_coding synonymous_variant LOW 246T>C Ser82Ser
M0065363 PHMFFHMH_00006 5771 3 Skin 0.13 protein_coding synonymous_variant LOW 240C>T His80His
M0065364 PHMFFHMH_00006 5787 3 Skin 0.13 protein_coding missense_variant MODERATE 224C>A Ala75Glu
M0065365 PHMFFHMH_00002 6078 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4553C>T None
M0065366 PHMFFHMH_00002 6135 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4610G>C None
M0065367 PHMFFHMH_00005 4707 3 Skin 0.13 protein_coding synonymous_variant LOW 192C>T Phe64Phe
M0065368 PHMFFHMH_00006 5572 3 Skin 0.13 protein_coding missense_variant MODERATE 439A>G Thr147Ala
M0065369 PHMFFHMH_00006 5615 3 Skin 0.13 protein_coding synonymous_variant LOW 396A>G Gln132Gln
M0065370 PHMFFHMH_00002 644 3 Skin 0.13 protein_coding synonymous_variant LOW 882T>C Phe294Phe
M0065371 PHMFFHMH_00002 665 7 Skin 0.29 protein_coding synonymous_variant LOW 861T>C Ala287Ala
M0065372 PHMFFHMH_00002 689 6 Skin 0.25 protein_coding synonymous_variant LOW 837A>C Arg279Arg
M0065373 PHMFFHMH_00002 701 3 Skin 0.13 protein_coding synonymous_variant LOW 825T>C Asn275Asn
M0065374 PHMFFHMH_00002 716 5 Skin 0.21 protein_coding missense_variant MODERATE 810A>C Gln270His
M0065375 PHMFFHMH_00002 722 4 Skin 0.17 protein_coding synonymous_variant LOW 804G>C Val268Val
M0065376 PHMFFHMH_00002 728 3 Skin 0.13 protein_coding synonymous_variant LOW 798C>T Ala266Ala
M0065377 PHMFFHMH_00002 743 5 Skin 0.21 protein_coding synonymous_variant LOW 783T>C His261His
M0065378 PHMFFHMH_00002 767 3 Skin 0.13 protein_coding synonymous_variant LOW 759A>G Gly253Gly
M0065379 PHMFFHMH_00002 854 7 Skin 0.29 protein_coding synonymous_variant LOW 672G>A Gln224Gln
M0065380 PHMFFHMH_00002 860 9 Skin 0.38 protein_coding synonymous_variant LOW 666A>G Val222Val
M0065381 PHMFFHMH_00002 869 9 Skin 0.38 protein_coding synonymous_variant LOW 657C>G Ala219Ala
M0065382 PHMFFHMH_00002 887 5 Skin 0.21 protein_coding synonymous_variant LOW 639C>T Leu213Leu
M0065383 PHMFFHMH_00002 1010 5 Skin 0.21 protein_coding synonymous_variant LOW 516G>T Ala172Ala
M0065384 PHMFFHMH_00002 1037 10 Skin 0.42 protein_coding synonymous_variant LOW 489A>G Pro163Pro
M0065385 PHMFFHMH_00002 1205 6 Skin 0.25 protein_coding synonymous_variant LOW 321C>T Ala107Ala
M0065386 PHMFFHMH_00002 1232 7 Skin 0.29 protein_coding synonymous_variant LOW 294C>G Pro98Pro
M0065387 PHMFFHMH_00002 1259 6 Skin 0.25 protein_coding synonymous_variant LOW 267T>C Gly89Gly
M0065388 PHMFFHMH_00002 1474 10 Skin 0.42 protein_coding missense_variant MODERATE 52G>A Ala18Thr
M0065389 PHMFFHMH_00002 1475 3 Skin 0.13 protein_coding synonymous_variant LOW 51G>A Pro17Pro
M0065390 PHMFFHMH_00002 1478 3 Skin 0.13 protein_coding synonymous_variant LOW 48G>C Ala16Ala
M0065391 PHMFFHMH_00003 1660 10 Skin 0.42 protein_coding synonymous_variant LOW 1098T>C Pro366Pro
M0065392 PHMFFHMH_00003 1679 12 Skin 0.50 protein_coding missense_variant MODERATE 1079C>A Ala360Glu
M0065393 PHMFFHMH_00003 1759 10 Skin 0.42 protein_coding synonymous_variant LOW 999G>A Val333Val
M0065394 PHMFFHMH_00003 1763 10 Skin 0.42 protein_coding missense_variant MODERATE 995G>A Cys332Tyr
M0065395 PHMFFHMH_00003 1832 5 Skin 0.21 protein_coding missense_variant MODERATE 926A>G Asn309Ser
M0065396 PHMFFHMH_00003 1969 6 Skin 0.25 protein_coding synonymous_variant LOW 789C>T Asp263Asp
M0065397 PHMFFHMH_00003 1976 16 Skin 0.67 protein_coding missense_variant MODERATE 782T>C Leu261Pro
M0065398 PHMFFHMH_00003 2125 4 Skin 0.17 protein_coding synonymous_variant LOW 633T>C Ala211Ala
M0065399 PHMFFHMH_00003 2149 15 Skin 0.63 protein_coding synonymous_variant LOW 609C>A Pro203Pro
M0065400 PHMFFHMH_00003 2161 5 Skin 0.21 protein_coding missense_variant MODERATE 597C>G Asp199Glu
M0065401 PHMFFHMH_00003 2192 14 Skin 0.58 protein_coding missense_variant MODERATE 566A>G Gln189Arg
M0065402 PHMFFHMH_00003 2194 15 Skin 0.63 protein_coding synonymous_variant LOW 564A>G Lys188Lys
M0065403 PHMFFHMH_00003 2227 9 Skin 0.38 protein_coding synonymous_variant LOW 531G>A Glu177Glu
M0065404 PHMFFHMH_00003 2251 16 Skin 0.67 protein_coding synonymous_variant LOW 507A>G Thr169Thr
M0065405 PHMFFHMH_00003 2290 5 Skin 0.21 protein_coding synonymous_variant LOW 468G>A Gln156Gln
M0065406 PHMFFHMH_00003 2311 17 Skin 0.71 protein_coding synonymous_variant LOW 447T>C Ala149Ala
M0065407 PHMFFHMH_00003 2317 9 Skin 0.38 protein_coding synonymous_variant LOW 441T>G Pro147Pro
M0065408 PHMFFHMH_00003 2373 6 Skin 0.25 protein_coding missense_variant MODERATE 385G>A Ala129Thr
M0065409 PHMFFHMH_00003 2377 7 Skin 0.29 protein_coding synonymous_variant LOW 381C>T Ser127Ser
M0065410 PHMFFHMH_00003 2380 11 Skin 0.46 protein_coding synonymous_variant LOW 378T>C Ala126Ala
M0065411 PHMFFHMH_00003 2386 11 Skin 0.46 protein_coding synonymous_variant LOW 372C>A Ala124Ala
M0065412 PHMFFHMH_00003 2407 6 Skin 0.25 protein_coding synonymous_variant LOW 351G>A Leu117Leu
M0065413 PHMFFHMH_00003 2454 16 Skin 0.67 protein_coding missense_variant MODERATE 304G>A Val102Ile
M0065414 PHMFFHMH_00003 2497 4 Skin 0.17 protein_coding synonymous_variant LOW 261A>G Leu87Leu
M0065415 PHMFFHMH_00003 2506 5 Skin 0.21 protein_coding synonymous_variant LOW 252C>G Ala84Ala
M0065416 PHMFFHMH_00003 2692 7 Skin 0.29 protein_coding synonymous_variant LOW 66C>T Ile22Ile
M0065417 PHMFFHMH_00003 2707 5 Skin 0.21 protein_coding synonymous_variant LOW 51C>A Thr17Thr
M0065418 PHMFFHMH_00003 2743 9 Skin 0.38 protein_coding synonymous_variant LOW 15G>T Ala5Ala
M0065419 PHMFFHMH_00003 2746 17 Skin 0.71 protein_coding missense_variant MODERATE 12A>C Gln4His
M0065420 PHMFFHMH_00003 2750 3 Skin 0.13 protein_coding missense_variant MODERATE 8T>C Ile3Thr
M0065421 PHMFFHMH_00003 2752 3 Skin 0.13 protein_coding synonymous_variant LOW 6A>G Thr2Thr
M0065422 PHMFFHMH_00004 2766 13 Skin 0.54 protein_coding synonymous_variant LOW 825C>T Cys275Cys
M0065423 PHMFFHMH_00004 2775 17 Skin 0.71 protein_coding synonymous_variant LOW 816C>T Ser272Ser
M0065424 PHMFFHMH_00004 2925 9 Skin 0.38 protein_coding synonymous_variant LOW 666A>G Lys222Lys
M0065425 PHMFFHMH_00004 2967 9 Skin 0.38 protein_coding synonymous_variant LOW 624C>T Val208Val
M0065426 PHMFFHMH_00004 3207 9 Skin 0.38 protein_coding synonymous_variant LOW 384G>A Gln128Gln
M0065427 PHMFFHMH_00004 3305 3 Skin 0.13 protein_coding synonymous_variant LOW 286C>T Leu96Leu
M0065428 PHMFFHMH_00004 3569 3 Skin 0.13 protein_coding missense_variant MODERATE 22G>A Glu8Lys
M0065429 PHMFFHMH_00005 3858 7 Skin 0.29 protein_coding synonymous_variant LOW 1041T>C Val347Val
M0065430 PHMFFHMH_00005 4035 5 Skin 0.21 protein_coding synonymous_variant LOW 864A>G Arg288Arg
M0065431 PHMFFHMH_00005 4191 6 Skin 0.25 protein_coding missense_variant MODERATE 708A>G Ile236Met
M0065432 PHMFFHMH_00005 4230 3 Skin 0.13 protein_coding synonymous_variant LOW 669T>C His223His
M0065433 PHMFFHMH_00006 5421 3 Skin 0.13 protein_coding missense_variant MODERATE 590A>C Asp197Ala
M0065434 PHMFFHMH_00006 5423 3 Skin 0.13 protein_coding missense_variant MODERATE 588G>T Glu196Asp
M0065435 PHMFFHMH_00002 1142 9 Skin 0.38 protein_coding synonymous_variant LOW 384C>A Pro128Pro
M0065436 PHMFFHMH_00002 1166 6 Skin 0.25 protein_coding synonymous_variant LOW 360T>C Ala120Ala
M0065437 PHMFFHMH_00002 1174 7 Skin 0.29 protein_coding missense_variant MODERATE 352T>C Ser118Pro
M0065438 PHMFFHMH_00002 1226 6 Skin 0.25 protein_coding synonymous_variant LOW 300A>G Val100Val
M0065439 PHMFFHMH_00002 1288 5 Skin 0.21 protein_coding missense_variant MODERATE 238G>A Ala80Thr
M0065440 PHMFFHMH_00002 1376 3 Skin 0.13 protein_coding synonymous_variant LOW 150C>T Asp50Asp
M0065441 PHMFFHMH_00002 1454 7 Skin 0.29 protein_coding synonymous_variant LOW 72G>A Leu24Leu
M0065442 PHMFFHMH_00002 1456 8 Skin 0.33 protein_coding synonymous_variant LOW 70T>C Leu24Leu
M0065443 PHMFFHMH_00003 1798 8 Skin 0.33 protein_coding synonymous_variant LOW 960G>A Glu320Glu
M0065444 PHMFFHMH_00003 1801 8 Skin 0.33 protein_coding synonymous_variant LOW 957C>T Ala319Ala
M0065445 PHMFFHMH_00003 1852 9 Skin 0.38 protein_coding synonymous_variant LOW 906G>A Leu302Leu
M0065446 PHMFFHMH_00003 1935 10 Skin 0.42 protein_coding synonymous_variant LOW 823C>T Leu275Leu
M0065447 PHMFFHMH_00003 1937 11 Skin 0.46 protein_coding missense_variant MODERATE 821C>G Ala274Gly
M0065448 PHMFFHMH_00003 2080 5 Skin 0.21 protein_coding synonymous_variant LOW 678C>G Pro226Pro
M0065449 PHMFFHMH_00003 2718 6 Skin 0.25 protein_coding missense_variant MODERATE 40G>T Ala14Ser
M0065450 PHMFFHMH_00003 2719 6 Skin 0.25 protein_coding synonymous_variant LOW 39C>T Pro13Pro
M0065451 PHMFFHMH_00004 3183 4 Skin 0.17 protein_coding synonymous_variant LOW 408G>A Leu136Leu
M0065452 PHMFFHMH_00004 3249 9 Skin 0.38 protein_coding synonymous_variant LOW 342G>A Ser114Ser
M0065453 PHMFFHMH_00002 635 4 Skin 0.17 protein_coding synonymous_variant LOW 891T>C Asp297Asp
M0065454 PHMFFHMH_00002 824 3 Skin 0.13 protein_coding synonymous_variant LOW 702G>A Glu234Glu
M0065455 PHMFFHMH_00002 1194 6 Skin 0.25 protein_coding missense_variant MODERATE 332C>G Thr111Ser
M0065456 PHMFFHMH_00002 1319 3 Skin 0.13 protein_coding synonymous_variant LOW 207C>T Leu69Leu
M0065457 PHMFFHMH_00002 1596 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -71A>C None
M0065458 PHMFFHMH_00003 2100 10 Skin 0.42 protein_coding missense_variant MODERATE 658A>G Asn220Asp
M0065459 PHMFFHMH_00003 2284 10 Skin 0.42 protein_coding synonymous_variant LOW 474C>G Pro158Pro
M0065460 PHMFFHMH_00003 2362 3 Skin 0.13 protein_coding synonymous_variant LOW 396T>C Ser132Ser
M0065461 PHMFFHMH_00003 2413 4 Skin 0.17 protein_coding synonymous_variant LOW 345A>C Val115Val
M0065462 PHMFFHMH_00003 2578 12 Skin 0.50 protein_coding synonymous_variant LOW 180A>G Thr60Thr
M0065463 PHMFFHMH_00003 2656 7 Skin 0.29 protein_coding synonymous_variant LOW 102G>C Thr34Thr
M0065464 PHMFFHMH_00004 3357 3 Skin 0.13 protein_coding synonymous_variant LOW 234G>T Thr78Thr
M0065465 PHMFFHMH_00003 1996 3 Skin 0.13 protein_coding synonymous_variant LOW 762G>A Val254Val
M0065466 PHMFFHMH_00003 2476 8 Skin 0.33 protein_coding synonymous_variant LOW 282C>T Cys94Cys
M0065467 PHMFFHMH_00003 2549 10 Skin 0.42 protein_coding missense_variant MODERATE 209T>C Met70Thr
M0065468 PHMFFHMH_00003 2550 10 Skin 0.42 protein_coding missense_variant MODERATE 208A>G Met70Val
M0065469 PHMFFHMH_00004 3191 5 Skin 0.21 protein_coding missense_variant MODERATE 400G>C Ala134Pro
M0065470 PHMFFHMH_00004 3255 3 Skin 0.13 protein_coding synonymous_variant LOW 336G>A Glu112Glu
M0065471 PHMFFHMH_00004 3399 3 Skin 0.13 protein_coding synonymous_variant LOW 192C>G Thr64Thr
M0065472 PHMFFHMH_00002 863 6 Skin 0.25 protein_coding synonymous_variant LOW 663T>C Phe221Phe
M0065473 PHMFFHMH_00002 1148 3 Skin 0.13 protein_coding synonymous_variant LOW 378A>G Val126Val
M0065474 PHMFFHMH_00002 1160 5 Skin 0.21 protein_coding synonymous_variant LOW 366A>G Val122Val
M0065475 PHMFFHMH_00002 1163 5 Skin 0.21 protein_coding synonymous_variant LOW 363G>A Leu121Leu
M0065476 PHMFFHMH_00002 1245 7 Skin 0.29 protein_coding missense_variant MODERATE 281C>A Pro94Gln
M0065477 PHMFFHMH_00002 1247 8 Skin 0.33 protein_coding synonymous_variant LOW 279C>T Arg93Arg
M0065478 PHMFFHMH_00003 2032 4 Skin 0.17 protein_coding synonymous_variant LOW 726G>A Leu242Leu
M0065479 PHMFFHMH_00003 2183 4 Skin 0.17 protein_coding missense_variant MODERATE 575C>G Ala192Gly
M0065480 PHMFFHMH_00003 2196 4 Skin 0.17 protein_coding missense_variant MODERATE 562A>G Lys188Glu
M0065481 PHMFFHMH_00003 2581 4 Skin 0.17 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0065482 PHMFFHMH_00003 2638 6 Skin 0.25 protein_coding synonymous_variant LOW 120C>T Ile40Ile
M0065483 PHMFFHMH_00005 3963 7 Skin 0.29 protein_coding synonymous_variant LOW 936A>G Pro312Pro
M0065484 PHMFFHMH_00006 5471 3 Skin 0.13 protein_coding synonymous_variant LOW 540C>T Thr180Thr
M0065485 PHMFFHMH_00003 1986 3 Skin 0.13 protein_coding missense_variant MODERATE 772A>C Lys258Gln
M0065486 PHMFFHMH_00003 2663 3 Skin 0.13 protein_coding missense_variant MODERATE 95G>C Ser32Thr
M0065487 PHMFFHMH_00004 2811 5 Skin 0.21 protein_coding synonymous_variant LOW 780C>T Gly260Gly
M0065488 PHMFFHMH_00005 4181 3 Skin 0.13 protein_coding missense_variant MODERATE 718G>A Ala240Thr
M0065489 PHMFFHMH_00005 4249 4 Skin 0.17 protein_coding missense_variant MODERATE 650A>G Asp217Gly
M0065490 PHMFFHMH_00005 4250 4 Skin 0.17 protein_coding missense_variant MODERATE 649G>C Asp217His
M0065491 PHMFFHMH_00005 4386 5 Skin 0.21 protein_coding synonymous_variant LOW 513C>A Val171Val
M0065492 PHMFFHMH_00005 4892 3 Skin 0.13 protein_coding missense_variant MODERATE 7G>C Glu3Gln
M0065493 PHMFFHMH_00002 6012 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4487G>C None
M0065494 PHMFFHMH_00003 7302 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4545A>T None
M0065495 PHMFFHMH_00004 3015 4 Skin 0.17 protein_coding synonymous_variant LOW 576T>C Ser192Ser
M0065496 PHMFFHMH_00004 3108 3 Skin 0.13 protein_coding synonymous_variant LOW 483C>T Asp161Asp
M0065497 PHMFFHMH_00003 2152 3 Skin 0.13 protein_coding synonymous_variant LOW 606T>C Ile202Ile
M0065498 PHMFFHMH_00002 1124 3 Skin 0.13 protein_coding synonymous_variant LOW 402C>T Ser134Ser
M0065499 PHMFFHMH_00002 1287 3 Skin 0.13 protein_coding missense_variant MODERATE 239C>A Ala80Asp
M0065500 PHMFFHMH_00002 1346 3 Skin 0.13 protein_coding synonymous_variant LOW 180A>C Val60Val
M0065501 PHMFFHMH_00004 3107 3 Skin 0.13 protein_coding missense_variant MODERATE 484A>G Asn162Asp
M0065502 PHMFFHMH_00005 4083 4 Skin 0.17 protein_coding synonymous_variant LOW 816G>A Ser272Ser
M0065503 PHMFFHMH_00005 4317 3 Skin 0.13 protein_coding synonymous_variant LOW 582A>G Ser194Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term