Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2887
  Reference Plasmid   DP1808006663_bin.2__NODE_64_length_10244_cov_0.946772
  Reference Plasmid Size   10244
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0065635 HKJPLCCB_00006 8974 43 Skin 0.55 protein_coding synonymous_variant LOW 216C>T Arg72Arg
M0065636 HKJPLCCB_00005 10144 34 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2029A>G None
M0065637 HKJPLCCB_00005 8528 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -413A>C None
M0065638 HKJPLCCB_00005 8535 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -420T>C None
M0065639 HKJPLCCB_00005 8544 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -429T>G None
M0065640 HKJPLCCB_00005 8557 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -442A>G None
M0065641 HKJPLCCB_00005 8564 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -449A>T None
M0065642 HKJPLCCB_00005 8625 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -510C>T None
M0065643 HKJPLCCB_00005 8675 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -560G>T None
M0065644 HKJPLCCB_00006 8815 3 Skin 0.04 protein_coding synonymous_variant LOW 57C>T Val19Val
M0065645 HKJPLCCB_00006 8902 5 Skin 0.06 protein_coding synonymous_variant LOW 144C>T Ala48Ala
M0065646 HKJPLCCB_00006 8908 10 Skin 0.13 protein_coding synonymous_variant LOW 150T>C Gly50Gly
M0065647 HKJPLCCB_00006 8929 10 Skin 0.13 protein_coding synonymous_variant LOW 171T>A Ile57Ile
M0065648 HKJPLCCB_00006 9010 5 Skin 0.06 protein_coding synonymous_variant LOW 252G>A Ala84Ala
M0065649 HKJPLCCB_00006 9046 4 Skin 0.05 protein_coding synonymous_variant LOW 288T>C Asp96Asp
M0065650 HKJPLCCB_00006 9106 8 Skin 0.10 protein_coding synonymous_variant LOW 348A>C Ser116Ser
M0065651 HKJPLCCB_00006 9149 8 Skin 0.10 protein_coding missense_variant MODERATE 391A>G Thr131Ala
M0065652 HKJPLCCB_00006 9190 7 Skin 0.09 protein_coding synonymous_variant LOW 432T>C Phe144Phe
M0065653 HKJPLCCB_00006 9248 7 Skin 0.09 protein_coding missense_variant MODERATE 490A>G Thr164Ala
M0065654 HKJPLCCB_00006 9292 8 Skin 0.10 protein_coding synonymous_variant LOW 534C>T Ala178Ala
M0065655 HKJPLCCB_00006 9298 6 Skin 0.08 protein_coding synonymous_variant LOW 540C>T Arg180Arg
M0065656 HKJPLCCB_00006 9345 5 Skin 0.06 protein_coding missense_variant MODERATE 587A>G Asn196Ser
M0065657 HKJPLCCB_00006 9374 4 Skin 0.05 protein_coding missense_variant MODERATE 616C>T Arg206Cys
M0065658 HKJPLCCB_00006 9424 3 Skin 0.04 protein_coding synonymous_variant LOW 666G>A Pro222Pro
M0065659 HKJPLCCB_00006 9514 3 Skin 0.04 protein_coding synonymous_variant LOW 756T>A Val252Val
M0065660 HKJPLCCB_00006 9541 3 Skin 0.04 protein_coding synonymous_variant LOW 783A>G Pro261Pro
M0065661 HKJPLCCB_00006 9555 5 Skin 0.06 protein_coding missense_variant MODERATE 797G>A Gly266Glu
M0065662 HKJPLCCB_00006 9577 3 Skin 0.04 protein_coding synonymous_variant LOW 819C>T Val273Val
M0065663 HKJPLCCB_00006 9593 3 Skin 0.04 protein_coding missense_variant MODERATE 835A>G Ile279Val
M0065664 HKJPLCCB_00006 9634 3 Skin 0.04 protein_coding synonymous_variant LOW 876C>T Pro292Pro
M0065665 HKJPLCCB_00005 9804 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1689T>C None
M0065666 HKJPLCCB_00005 9816 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1701C>T None
M0065667 HKJPLCCB_00005 9854 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1739G>T None
M0065668 HKJPLCCB_00005 9901 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1786C>T None
M0065669 HKJPLCCB_00005 10022 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1907T>C None
M0065670 HKJPLCCB_00005 10069 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1954A>C None
M0065671 HKJPLCCB_00005 10137 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2022G>A None
M0065672 HKJPLCCB_00004 6580 5 Skin 0.06 protein_coding missense_variant MODERATE 268G>A Ala90Thr
M0065673 HKJPLCCB_00004 6583 5 Skin 0.06 protein_coding missense_variant MODERATE 271A>G Thr91Ala
M0065674 HKJPLCCB_00003 5941 4 Skin 0.05 protein_coding synonymous_variant LOW 3660A>T Pro1220Pro
M0065675 HKJPLCCB_00005 7847 4 Skin 0.05 protein_coding missense_variant MODERATE 269C>T Ser90Leu
M0065676 HKJPLCCB_00005 8043 5 Skin 0.06 protein_coding missense_variant MODERATE 73T>G Leu25Val
M0065677 HKJPLCCB_00005 8133 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -18G>A None
M0065678 HKJPLCCB_00006 9198 12 Skin 0.15 protein_coding missense_variant MODERATE 440G>C Arg147Pro
M0065679 HKJPLCCB_00001 110 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -75G>A None
M0065680 HKJPLCCB_00003 742 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1540C>A None
M0065681 HKJPLCCB_00002 1473 5 Skin 0.06 protein_coding missense_variant MODERATE 638A>G Lys213Arg
M0065682 HKJPLCCB_00002 1474 5 Skin 0.06 protein_coding missense_variant MODERATE 637A>G Lys213Glu
M0065683 HKJPLCCB_00003 2510 9 Skin 0.12 protein_coding missense_variant MODERATE 229A>G Asn77Asp
M0065684 HKJPLCCB_00003 4283 12 Skin 0.15 protein_coding missense_variant MODERATE 2002A>G Thr668Ala
M0065685 HKJPLCCB_00003 4912 3 Skin 0.04 protein_coding synonymous_variant LOW 2631A>G Thr877Thr
M0065686 HKJPLCCB_00003 5439 12 Skin 0.15 protein_coding missense_variant MODERATE 3158C>T Ala1053Val
M0065687 HKJPLCCB_00006 8772 6 Skin 0.08 protein_coding missense_variant MODERATE 14G>A Arg5Gln
M0065688 HKJPLCCB_00005 9743 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1628C>T None
M0065689 HKJPLCCB_00005 9744 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1629G>T None
M0065690 HKJPLCCB_00005 9866 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1751G>A None
M0065691 HKJPLCCB_00005 9867 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1752C>T None
M0065692 HKJPLCCB_00005 9912 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1797C>T None
M0065693 HKJPLCCB_00005 9917 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1802A>G None
M0065694 HKJPLCCB_00005 10052 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1937C>T None
M0065695 HKJPLCCB_00005 10134 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2019C>T None
M0065696 HKJPLCCB_00005 10209 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2094C>G None
M0065697 HKJPLCCB_00005 8262 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -147G>T None
M0065698 HKJPLCCB_00005 8263 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -148C>T None
M0065699 HKJPLCCB_00006 8911 5 Skin 0.06 protein_coding synonymous_variant LOW 153T>C Ser51Ser
M0065700 HKJPLCCB_00006 8921 5 Skin 0.06 protein_coding missense_variant MODERATE 163G>A Val55Ile
M0065701 HKJPLCCB_00003 976 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1306A>T None
M0065702 HKJPLCCB_00005 8193 19 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -78G>A None
M0065703 HKJPLCCB_00004 7146 5 Skin 0.06 protein_coding synonymous_variant LOW 834C>T Asn278Asn
M0065704 HKJPLCCB_00003 6287 7 Skin 0.09 protein_coding missense_variant MODERATE 4006A>G Thr1336Ala
M0065705 HKJPLCCB_00003 6318 5 Skin 0.06 protein_coding missense_variant MODERATE 4037G>A Gly1346Glu
M0065706 HKJPLCCB_00003 6351 6 Skin 0.08 protein_coding missense_variant MODERATE 4070C>T Ser1357Phe
M0065707 HKJPLCCB_00006 9487 3 Skin 0.04 protein_coding synonymous_variant LOW 729G>A Pro243Pro
M0065708 HKJPLCCB_00006 9506 3 Skin 0.04 protein_coding missense_variant MODERATE 748G>A Asp250Asn
M0065709 HKJPLCCB_00003 6062 3 Skin 0.04 protein_coding missense_variant MODERATE 3781G>A Gly1261Arg
M0065710 HKJPLCCB_00003 6063 3 Skin 0.04 protein_coding missense_variant MODERATE 3782G>A Gly1261Glu
M0065711 HKJPLCCB_00003 6066 3 Skin 0.04 protein_coding missense_variant MODERATE 3785A>G Asp1262Gly
M0065712 HKJPLCCB_00003 6076 3 Skin 0.04 protein_coding synonymous_variant LOW 3795G>A Val1265Val
M0065713 HKJPLCCB_00003 6094 3 Skin 0.04 protein_coding synonymous_variant LOW 3813T>C Leu1271Leu
M0065714 HKJPLCCB_00003 6097 3 Skin 0.04 protein_coding synonymous_variant LOW 3816A>G Val1272Val
M0065715 HKJPLCCB_00003 6103 3 Skin 0.04 protein_coding synonymous_variant LOW 3822G>A Gly1274Gly
M0065716 HKJPLCCB_00003 6106 3 Skin 0.04 protein_coding synonymous_variant LOW 3825T>C Ala1275Ala
M0065717 HKJPLCCB_00003 6126 3 Skin 0.04 protein_coding missense_variant MODERATE 3845A>G His1282Arg
M0065718 HKJPLCCB_00003 6142 3 Skin 0.04 protein_coding synonymous_variant LOW 3861A>G Leu1287Leu
M0065719 HKJPLCCB_00003 6145 3 Skin 0.04 protein_coding synonymous_variant LOW 3864A>C Pro1288Pro
M0065720 HKJPLCCB_00003 6163 3 Skin 0.04 protein_coding synonymous_variant LOW 3882C>T Gly1294Gly
M0065721 HKJPLCCB_00003 6208 6 Skin 0.08 protein_coding synonymous_variant LOW 3927G>C Pro1309Pro
M0065722 HKJPLCCB_00003 6226 6 Skin 0.08 protein_coding synonymous_variant LOW 3945T>C Pro1315Pro
M0065723 HKJPLCCB_00003 6232 6 Skin 0.08 protein_coding synonymous_variant LOW 3951G>A Gln1317Gln
M0065724 HKJPLCCB_00003 6235 6 Skin 0.08 protein_coding synonymous_variant LOW 3954C>A Pro1318Pro
M0065725 HKJPLCCB_00003 6238 6 Skin 0.08 protein_coding synonymous_variant LOW 3957C>T Ala1319Ala
M0065726 HKJPLCCB_00003 6243 6 Skin 0.08 protein_coding missense_variant MODERATE 3962C>T Ala1321Val
M0065727 HKJPLCCB_00003 6245 6 Skin 0.08 protein_coding missense_variant MODERATE 3964A>G Thr1322Ala
M0065728 HKJPLCCB_00004 6480 7 Skin 0.09 protein_coding synonymous_variant LOW 168G>A Leu56Leu
M0065729 HKJPLCCB_00005 8303 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -188T>C None
M0065730 HKJPLCCB_00005 8305 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -190C>T None
M0065731 HKJPLCCB_00005 8306 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -191C>T None
M0065732 HKJPLCCB_00005 8328 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -213G>T None
M0065733 HKJPLCCB_00005 8336 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -221T>C None
M0065734 HKJPLCCB_00005 8351 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -236G>A None
M0065735 HKJPLCCB_00005 8389 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -274C>T None
M0065736 HKJPLCCB_00005 8400 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -285C>T None
M0065737 HKJPLCCB_00005 8466 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -351T>C None
M0065738 HKJPLCCB_00005 8481 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -366G>A None
M0065739 HKJPLCCB_00005 8487 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -372C>T None
M0065740 HKJPLCCB_00005 8549 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -434C>G None
M0065741 HKJPLCCB_00005 8580 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -465T>C None
M0065742 HKJPLCCB_00005 8604 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -489G>A None
M0065743 HKJPLCCB_00005 8637 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -522T>A None
M0065744 HKJPLCCB_00005 8645 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -530T>C None
M0065745 HKJPLCCB_00005 8701 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -586A>G None
M0065746 HKJPLCCB_00003 4943 3 Skin 0.04 protein_coding missense_variant MODERATE 2662C>A His888Asn
M0065747 HKJPLCCB_00003 5130 3 Skin 0.04 protein_coding missense_variant MODERATE 2849A>G His950Arg
M0065748 HKJPLCCB_00003 5146 3 Skin 0.04 protein_coding synonymous_variant LOW 2865A>G Pro955Pro
M0065749 HKJPLCCB_00005 10131 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2016C>T None
M0065750 HKJPLCCB_00003 5393 3 Skin 0.04 protein_coding missense_variant MODERATE 3112G>A Gly1038Ser
M0065751 HKJPLCCB_00003 5410 3 Skin 0.04 protein_coding synonymous_variant LOW 3129C>T Asp1043Asp
M0065752 HKJPLCCB_00003 5417 3 Skin 0.04 protein_coding missense_variant MODERATE 3136A>G Ser1046Gly
M0065753 HKJPLCCB_00003 5939 3 Skin 0.04 protein_coding missense_variant MODERATE 3658C>T Pro1220Ser
M0065754 HKJPLCCB_00003 5974 3 Skin 0.04 protein_coding synonymous_variant LOW 3693G>A Gly1231Gly
M0065755 HKJPLCCB_00003 5977 3 Skin 0.04 protein_coding synonymous_variant LOW 3696A>G Arg1232Arg
M0065756 HKJPLCCB_00003 5991 3 Skin 0.04 protein_coding missense_variant MODERATE 3710G>A Gly1237Asp
M0065757 HKJPLCCB_00003 6005 3 Skin 0.04 protein_coding missense_variant MODERATE 3724T>G Ser1242Ala
M0065758 HKJPLCCB_00003 6014 3 Skin 0.04 protein_coding missense_variant MODERATE 3733T>G Leu1245Val
M0065759 HKJPLCCB_00003 6236 5 Skin 0.06 protein_coding missense_variant MODERATE 3955G>A Ala1319Thr
M0065760 HKJPLCCB_00004 6474 6 Skin 0.08 protein_coding synonymous_variant LOW 162C>T Asp54Asp
M0065761 HKJPLCCB_00004 6483 6 Skin 0.08 protein_coding synonymous_variant LOW 171A>C Ala57Ala
M0065762 HKJPLCCB_00004 6484 6 Skin 0.08 protein_coding missense_variant MODERATE 172C>G Leu58Val
M0065763 HKJPLCCB_00004 6485 6 Skin 0.08 protein_coding missense_variant MODERATE 173T>G Leu58Arg
M0065764 HKJPLCCB_00004 6489 6 Skin 0.08 protein_coding synonymous_variant LOW 177C>G Leu59Leu
M0065765 HKJPLCCB_00006 9021 3 Skin 0.04 protein_coding missense_variant MODERATE 263G>A Arg88His
M0065766 HKJPLCCB_00006 9044 3 Skin 0.04 protein_coding missense_variant MODERATE 286G>A Asp96Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term