Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2894
  Reference Plasmid   DP1808006707_bin.6__NODE_995_length_3566_cov_1.343525
  Reference Plasmid Size   3566
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0066091 MAMNPAEJ_00001 204 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *718A>G None
M0066092 MAMNPAEJ_00001 243 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *679A>C None
M0066093 MAMNPAEJ_00001 245 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *677G>C None
M0066094 MAMNPAEJ_00001 254 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *668C>A None
M0066095 MAMNPAEJ_00001 258 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *664C>T None
M0066096 MAMNPAEJ_00001 345 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *577C>T None
M0066097 MAMNPAEJ_00001 438 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *484C>T None
M0066098 MAMNPAEJ_00001 459 6 Skin 0.60 protein_coding downstream_gene_variant MODIFIER *463T>C None
M0066099 MAMNPAEJ_00001 590 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *332G>A None
M0066100 MAMNPAEJ_00001 604 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *318G>A None
M0066101 MAMNPAEJ_00001 621 8 Skin 0.80 protein_coding downstream_gene_variant MODIFIER *301T>C None
M0066102 MAMNPAEJ_00001 639 9 Skin 0.90 protein_coding downstream_gene_variant MODIFIER *283C>A None
M0066103 MAMNPAEJ_00001 663 7 Skin 0.70 protein_coding downstream_gene_variant MODIFIER *259A>G None
M0066104 MAMNPAEJ_00001 713 10 Skin 1.00 protein_coding downstream_gene_variant MODIFIER *209T>A None
M0066105 MAMNPAEJ_00001 719 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *203G>A None
M0066106 MAMNPAEJ_00001 722 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *200C>G None
M0066107 MAMNPAEJ_00001 815 10 Skin 1.00 protein_coding downstream_gene_variant MODIFIER *107C>T None
M0066108 MAMNPAEJ_00001 886 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *36A>G None
M0066109 MAMNPAEJ_00001 892 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *30G>A None
M0066110 MAMNPAEJ_00001 1078 8 Skin 0.80 protein_coding synonymous_variant LOW 627G>A Gln209Gln
M0066111 MAMNPAEJ_00001 1081 10 Skin 1.00 protein_coding synonymous_variant LOW 624A>G Lys208Lys
M0066112 MAMNPAEJ_00001 1095 9 Skin 0.90 protein_coding missense_variant MODERATE 610A>G Ile204Val
M0066113 MAMNPAEJ_00001 1228 9 Skin 0.90 protein_coding synonymous_variant LOW 477C>T Val159Val
M0066114 MAMNPAEJ_00001 1315 3 Skin 0.30 protein_coding synonymous_variant LOW 390G>A Gly130Gly
M0066115 MAMNPAEJ_00001 1396 3 Skin 0.30 protein_coding synonymous_variant LOW 309T>C Thr103Thr
M0066116 MAMNPAEJ_00001 1564 6 Skin 0.60 protein_coding synonymous_variant LOW 141A>G Val47Val
M0066117 MAMNPAEJ_00001 1567 7 Skin 0.70 protein_coding synonymous_variant LOW 138A>G Leu46Leu
M0066118 MAMNPAEJ_00001 1624 6 Skin 0.60 protein_coding synonymous_variant LOW 81G>C Pro27Pro
M0066119 MAMNPAEJ_00001 1632 5 Skin 0.50 protein_coding missense_variant MODERATE 73A>C Ile25Leu
M0066120 MAMNPAEJ_00001 1660 4 Skin 0.40 protein_coding missense_variant MODERATE 45T>G Asp15Glu
M0066121 MAMNPAEJ_00001 1726 8 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -22C>T None
M0066122 MAMNPAEJ_00001 1785 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -81G>C None
M0066123 MAMNPAEJ_00001 1829 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -125C>T None
M0066124 MAMNPAEJ_00001 1943 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -239C>T None
M0066125 MAMNPAEJ_00001 1951 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -247C>G None
M0066126 MAMNPAEJ_00001 1957 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -253G>T None
M0066127 MAMNPAEJ_00002 2047 4 Skin 0.40 protein_coding synonymous_variant LOW 1110T>C Val370Val
M0066128 MAMNPAEJ_00002 2056 5 Skin 0.50 protein_coding synonymous_variant LOW 1101T>C Ile367Ile
M0066129 MAMNPAEJ_00002 2059 5 Skin 0.50 protein_coding synonymous_variant LOW 1098G>T Gly366Gly
M0066130 MAMNPAEJ_00002 2104 3 Skin 0.30 protein_coding synonymous_variant LOW 1053C>T Thr351Thr
M0066131 MAMNPAEJ_00002 2152 4 Skin 0.40 protein_coding synonymous_variant LOW 1005C>T Gly335Gly
M0066132 MAMNPAEJ_00002 2155 3 Skin 0.30 protein_coding synonymous_variant LOW 1002C>G Pro334Pro
M0066133 MAMNPAEJ_00002 2448 4 Skin 0.40 protein_coding missense_variant MODERATE 709A>T Met237Leu
M0066134 MAMNPAEJ_00002 2571 3 Skin 0.30 protein_coding missense_variant MODERATE 586C>A Gln196Lys
M0066135 MAMNPAEJ_00002 2587 4 Skin 0.40 protein_coding synonymous_variant LOW 570G>C Thr190Thr
M0066136 MAMNPAEJ_00002 2608 4 Skin 0.40 protein_coding synonymous_variant LOW 549T>C Asn183Asn
M0066137 MAMNPAEJ_00002 2620 4 Skin 0.40 protein_coding synonymous_variant LOW 537C>T Pro179Pro
M0066138 MAMNPAEJ_00002 2662 4 Skin 0.40 protein_coding synonymous_variant LOW 495T>C Phe165Phe
M0066139 MAMNPAEJ_00002 2665 4 Skin 0.40 protein_coding synonymous_variant LOW 492C>T Ala164Ala
M0066140 MAMNPAEJ_00002 2755 3 Skin 0.30 protein_coding synonymous_variant LOW 402C>T Ile134Ile
M0066141 MAMNPAEJ_00002 2880 3 Skin 0.30 protein_coding missense_variant MODERATE 277C>A Gln93Lys
M0066142 MAMNPAEJ_00002 2899 4 Skin 0.40 protein_coding synonymous_variant LOW 258T>C Asp86Asp
M0066143 MAMNPAEJ_00002 2929 4 Skin 0.40 protein_coding synonymous_variant LOW 228G>C Ala76Ala
M0066144 MAMNPAEJ_00002 2959 4 Skin 0.40 protein_coding synonymous_variant LOW 198A>G Leu66Leu
M0066145 MAMNPAEJ_00001 566 7 Skin 0.70 protein_coding downstream_gene_variant MODIFIER *356G>T None
M0066146 MAMNPAEJ_00001 571 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *351T>C None
M0066147 MAMNPAEJ_00001 576 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *346G>C None
M0066148 MAMNPAEJ_00001 615 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *307C>G None
M0066149 MAMNPAEJ_00001 708 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *214C>G None
M0066150 MAMNPAEJ_00001 709 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *213T>C None
M0066151 MAMNPAEJ_00001 711 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *211G>A None
M0066152 MAMNPAEJ_00001 804 6 Skin 0.60 protein_coding downstream_gene_variant MODIFIER *118A>G None
M0066153 MAMNPAEJ_00001 806 5 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *116C>G None
M0066154 MAMNPAEJ_00001 879 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *43C>T None
M0066155 MAMNPAEJ_00001 890 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *32T>C None
M0066156 MAMNPAEJ_00001 912 6 Skin 0.60 protein_coding downstream_gene_variant MODIFIER *10C>T None
M0066157 MAMNPAEJ_00001 918 7 Skin 0.70 protein_coding downstream_gene_variant MODIFIER *4T>C None
M0066158 MAMNPAEJ_00001 1036 8 Skin 0.80 protein_coding synonymous_variant LOW 669G>A Lys223Lys
M0066159 MAMNPAEJ_00001 1764 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -60C>G None
M0066160 MAMNPAEJ_00001 1801 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -97T>G None
M0066161 MAMNPAEJ_00001 1802 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -98C>G None
M0066162 MAMNPAEJ_00001 1868 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -164A>G None
M0066163 MAMNPAEJ_00001 1933 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -229G>A None
M0066164 MAMNPAEJ_00001 1955 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -251A>G None
M0066165 MAMNPAEJ_00001 1201 4 Skin 0.40 protein_coding synonymous_variant LOW 504C>T Thr168Thr
M0066166 MAMNPAEJ_00001 1615 3 Skin 0.30 protein_coding synonymous_variant LOW 90A>T Arg30Arg
M0066167 MAMNPAEJ_00001 1651 3 Skin 0.30 protein_coding synonymous_variant LOW 54A>G Pro18Pro
M0066168 MAMNPAEJ_00001 390 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *532T>C None
M0066169 MAMNPAEJ_00001 432 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *490A>T None
M0066170 MAMNPAEJ_00001 434 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *488T>G None
M0066171 MAMNPAEJ_00001 486 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *436T>C None
M0066172 MAMNPAEJ_00001 491 4 Skin 0.40 protein_coding downstream_gene_variant MODIFIER *431C>A None
M0066173 MAMNPAEJ_00001 501 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *421G>A None
M0066174 MAMNPAEJ_00001 555 3 Skin 0.30 protein_coding downstream_gene_variant MODIFIER *367G>A None
M0066175 MAMNPAEJ_00001 1234 3 Skin 0.30 protein_coding synonymous_variant LOW 471T>A Pro157Pro
M0066176 MAMNPAEJ_00001 1303 3 Skin 0.30 protein_coding synonymous_variant LOW 402A>G Leu134Leu
M0066177 MAMNPAEJ_00002 3052 3 Skin 0.30 protein_coding synonymous_variant LOW 105A>C Val35Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term