Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2897
  Reference Plasmid   DP1808006742_bin.7__NODE_15_length_29088_cov_9.666563
  Reference Plasmid Size   29088
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0066185 PFDEKNJO_00013 16786 6 Skin 0.14 protein_coding missense_variant MODERATE 217G>A Val73Ile
M0066186 PFDEKNJO_00013 16807 6 Skin 0.14 protein_coding missense_variant MODERATE 196A>G Lys66Glu
M0066187 PFDEKNJO_00013 16808 6 Skin 0.14 protein_coding synonymous_variant LOW 195T>C Leu65Leu
M0066188 PFDEKNJO_00013 16851 6 Skin 0.14 protein_coding missense_variant MODERATE 152G>A Arg51Lys
M0066189 PFDEKNJO_00013 16926 6 Skin 0.14 protein_coding missense_variant MODERATE 77A>G Glu26Gly
M0066190 PFDEKNJO_00008 17145 6 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3715A>T None
M0066191 PFDEKNJO_00014 17335 6 Skin 0.14 protein_coding synonymous_variant LOW 105A>G Arg35Arg
M0066192 PFDEKNJO_00014 17372 6 Skin 0.14 protein_coding missense_variant MODERATE 68G>C Ser23Thr
M0066193 PFDEKNJO_00014 17374 6 Skin 0.14 protein_coding synonymous_variant LOW 66G>A Leu22Leu
M0066194 PFDEKNJO_00014 17399 6 Skin 0.14 protein_coding missense_variant MODERATE 41C>T Thr14Ile
M0066195 PFDEKNJO_00014 17401 6 Skin 0.14 protein_coding synonymous_variant LOW 39C>A Ala13Ala
M0066196 PFDEKNJO_00008 17443 9 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4013A>G None
M0066197 PFDEKNJO_00008 17444 9 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4014A>G None
M0066198 PFDEKNJO_00015 17465 12 Skin 0.28 protein_coding synonymous_variant LOW 732T>A Arg244Arg
M0066199 PFDEKNJO_00015 17480 12 Skin 0.28 protein_coding missense_variant MODERATE 717G>T Gln239His
M0066200 PFDEKNJO_00015 17483 8 Skin 0.19 protein_coding synonymous_variant LOW 714A>G Leu238Leu
M0066201 PFDEKNJO_00015 17514 9 Skin 0.21 protein_coding missense_variant MODERATE 683G>A Arg228Lys
M0066202 PFDEKNJO_00015 17536 9 Skin 0.21 protein_coding synonymous_variant LOW 661T>C Leu221Leu
M0066203 PFDEKNJO_00015 17538 9 Skin 0.21 protein_coding missense_variant MODERATE 659C>T Ser220Leu
M0066204 PFDEKNJO_00015 17672 7 Skin 0.16 protein_coding synonymous_variant LOW 525G>A Lys175Lys
M0066205 PFDEKNJO_00015 17930 10 Skin 0.23 protein_coding synonymous_variant LOW 267G>A Gln89Gln
M0066206 PFDEKNJO_00015 18113 15 Skin 0.35 protein_coding synonymous_variant LOW 84T>C Asp28Asp
M0066207 PFDEKNJO_00016 18523 13 Skin 0.30 protein_coding synonymous_variant LOW 2523G>A Lys841Lys
M0066208 PFDEKNJO_00016 18682 7 Skin 0.16 protein_coding synonymous_variant LOW 2364C>T Phe788Phe
M0066209 PFDEKNJO_00016 19402 10 Skin 0.23 protein_coding synonymous_variant LOW 1644T>C Phe548Phe
M0066210 PFDEKNJO_00016 19472 10 Skin 0.23 protein_coding missense_variant MODERATE 1574C>T Ala525Val
M0066211 PFDEKNJO_00016 19582 11 Skin 0.26 protein_coding synonymous_variant LOW 1464T>C Phe488Phe
M0066212 PFDEKNJO_00016 19973 9 Skin 0.21 protein_coding missense_variant MODERATE 1073G>A Gly358Asp
M0066213 PFDEKNJO_00016 20335 9 Skin 0.21 protein_coding synonymous_variant LOW 711C>T Thr237Thr
M0066214 PFDEKNJO_00016 20523 11 Skin 0.26 protein_coding missense_variant MODERATE 523C>A Arg175Ser
M0066215 PFDEKNJO_00016 20908 12 Skin 0.28 protein_coding synonymous_variant LOW 138T>C Leu46Leu
M0066216 PFDEKNJO_00016 20920 12 Skin 0.28 protein_coding synonymous_variant LOW 126C>T Phe42Phe
M0066217 PFDEKNJO_00016 20953 11 Skin 0.26 protein_coding synonymous_variant LOW 93C>T Phe31Phe
M0066218 PFDEKNJO_00016 20956 12 Skin 0.28 protein_coding synonymous_variant LOW 90T>G Ala30Ala
M0066219 PFDEKNJO_00018 21729 6 Skin 0.14 protein_coding missense_variant MODERATE 250G>A Gly84Arg
M0066220 PFDEKNJO_00019 22154 6 Skin 0.14 protein_coding missense_variant MODERATE 1021G>A Gly341Ser
M0066221 PFDEKNJO_00019 22633 6 Skin 0.14 protein_coding missense_variant MODERATE 542A>G Lys181Arg
M0066222 PFDEKNJO_00019 22762 9 Skin 0.21 protein_coding missense_variant MODERATE 413G>A Arg138Gln
M0066223 PFDEKNJO_00019 22786 9 Skin 0.21 protein_coding missense_variant MODERATE 389T>C Val130Ala
M0066224 PFDEKNJO_00019 22991 9 Skin 0.21 protein_coding synonymous_variant LOW 184T>C Leu62Leu
M0066225 PFDEKNJO_00019 23152 5 Skin 0.12 protein_coding missense_variant MODERATE 23G>A Ser8Asn
M0066226 PFDEKNJO_00016 23252 9 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2207C>T None
M0066227 PFDEKNJO_00007 11482 4 Skin 0.09 protein_coding synonymous_variant LOW 582A>G Glu194Glu
M0066228 PFDEKNJO_00007 11598 4 Skin 0.09 protein_coding missense_variant MODERATE 466T>C Ser156Pro
M0066229 PFDEKNJO_00008 12134 3 Skin 0.07 protein_coding missense_variant MODERATE 1297G>A Val433Ile
M0066230 PFDEKNJO_00008 12226 4 Skin 0.09 protein_coding missense_variant MODERATE 1205G>A Ser402Asn
M0066231 PFDEKNJO_00008 12597 7 Skin 0.16 protein_coding synonymous_variant LOW 834C>T Ser278Ser
M0066232 PFDEKNJO_00008 12816 7 Skin 0.16 protein_coding missense_variant MODERATE 615C>A Asp205Glu
M0066233 PFDEKNJO_00008 12826 6 Skin 0.14 protein_coding missense_variant MODERATE 605C>T Ser202Phe
M0066234 PFDEKNJO_00008 13197 6 Skin 0.14 protein_coding synonymous_variant LOW 234T>C Asn78Asn
M0066235 PFDEKNJO_00008 13230 6 Skin 0.14 protein_coding synonymous_variant LOW 201A>G Arg67Arg
M0066236 PFDEKNJO_00008 13274 10 Skin 0.23 protein_coding missense_variant MODERATE 157A>G Asn53Asp
M0066237 PFDEKNJO_00008 13323 11 Skin 0.26 protein_coding synonymous_variant LOW 108A>G Glu36Glu
M0066238 PFDEKNJO_00009 13478 6 Skin 0.14 protein_coding synonymous_variant LOW 831A>G Pro277Pro
M0066239 PFDEKNJO_00009 13493 5 Skin 0.12 protein_coding synonymous_variant LOW 816C>T Ser272Ser
M0066240 PFDEKNJO_00009 13931 6 Skin 0.14 protein_coding synonymous_variant LOW 378C>T Phe126Phe
M0066241 PFDEKNJO_00009 14054 11 Skin 0.26 protein_coding synonymous_variant LOW 255G>C Gly85Gly
M0066242 PFDEKNJO_00009 14118 6 Skin 0.14 protein_coding missense_variant MODERATE 191C>A Pro64Gln
M0066243 PFDEKNJO_00009 14181 10 Skin 0.23 protein_coding missense_variant MODERATE 128A>G Asn43Ser
M0066244 PFDEKNJO_00009 14224 6 Skin 0.14 protein_coding missense_variant MODERATE 85C>T His29Tyr
M0066245 PFDEKNJO_00009 14272 6 Skin 0.14 protein_coding missense_variant MODERATE 37G>A Ala13Thr
M0066246 PFDEKNJO_00009 14275 6 Skin 0.14 protein_coding missense_variant MODERATE 34A>T Thr12Ser
M0066247 PFDEKNJO_00009 14294 7 Skin 0.16 protein_coding synonymous_variant LOW 15T>C Leu5Leu
M0066248 PFDEKNJO_00010 14634 13 Skin 0.30 protein_coding synonymous_variant LOW 390A>G Glu130Glu
M0066249 PFDEKNJO_00012 15313 8 Skin 0.19 protein_coding missense_variant MODERATE 1166G>A Arg389His
M0066250 PFDEKNJO_00012 15374 8 Skin 0.19 protein_coding missense_variant MODERATE 1105G>A Val369Ile
M0066251 PFDEKNJO_00012 15440 8 Skin 0.19 protein_coding missense_variant MODERATE 1039G>A Ala347Thr
M0066252 PFDEKNJO_00012 15568 3 Skin 0.07 protein_coding missense_variant MODERATE 911G>T Ser304Ile
M0066253 PFDEKNJO_00012 15661 11 Skin 0.26 protein_coding missense_variant MODERATE 818G>A Gly273Glu
M0066254 PFDEKNJO_00012 15781 9 Skin 0.21 protein_coding missense_variant MODERATE 698A>G Asp233Gly
M0066255 PFDEKNJO_00012 15785 9 Skin 0.21 protein_coding missense_variant MODERATE 694G>A Val232Ile
M0066256 PFDEKNJO_00012 15790 9 Skin 0.21 protein_coding missense_variant MODERATE 689T>C Val230Ala
M0066257 PFDEKNJO_00012 15791 9 Skin 0.21 protein_coding missense_variant MODERATE 688G>A Val230Ile
M0066258 PFDEKNJO_00012 15804 9 Skin 0.21 protein_coding missense_variant MODERATE 675A>T Lys225Asn
M0066259 PFDEKNJO_00012 15852 9 Skin 0.21 protein_coding synonymous_variant LOW 627T>G Val209Val
M0066260 PFDEKNJO_00012 15873 8 Skin 0.19 protein_coding synonymous_variant LOW 606G>A Ser202Ser
M0066261 PFDEKNJO_00012 15993 8 Skin 0.19 protein_coding synonymous_variant LOW 486A>G Lys162Lys
M0066262 PFDEKNJO_00012 16017 12 Skin 0.28 protein_coding synonymous_variant LOW 462A>G Leu154Leu
M0066263 PFDEKNJO_00012 16045 8 Skin 0.19 protein_coding missense_variant MODERATE 434G>T Cys145Phe
M0066264 PFDEKNJO_00012 16053 12 Skin 0.28 protein_coding synonymous_variant LOW 426T>C Gly142Gly
M0066265 PFDEKNJO_00012 16057 12 Skin 0.28 protein_coding missense_variant MODERATE 422C>T Ser141Leu
M0066266 PFDEKNJO_00012 16059 11 Skin 0.26 protein_coding synonymous_variant LOW 420A>C Ala140Ala
M0066267 PFDEKNJO_00012 16061 11 Skin 0.26 protein_coding missense_variant MODERATE 418G>T Ala140Ser
M0066268 PFDEKNJO_00012 16100 8 Skin 0.19 protein_coding missense_variant MODERATE 379C>T Pro127Ser
M0066269 PFDEKNJO_00012 16103 8 Skin 0.19 protein_coding missense_variant MODERATE 376T>C Phe126Leu
M0066270 PFDEKNJO_00012 16111 8 Skin 0.19 protein_coding missense_variant MODERATE 368A>T Tyr123Phe
M0066271 PFDEKNJO_00012 16137 8 Skin 0.19 protein_coding missense_variant MODERATE 342A>T Glu114Asp
M0066272 PFDEKNJO_00012 16139 8 Skin 0.19 protein_coding missense_variant MODERATE 340G>A Glu114Lys
M0066273 PFDEKNJO_00012 16149 12 Skin 0.28 protein_coding synonymous_variant LOW 330A>G Gln110Gln
M0066274 PFDEKNJO_00012 16163 8 Skin 0.19 protein_coding missense_variant MODERATE 316G>A Asp106Asn
M0066275 PFDEKNJO_00012 16166 8 Skin 0.19 protein_coding missense_variant MODERATE 313G>A Val105Ile
M0066276 PFDEKNJO_00012 16169 8 Skin 0.19 protein_coding missense_variant MODERATE 310A>G Asn104Asp
M0066277 PFDEKNJO_00012 16171 8 Skin 0.19 protein_coding missense_variant MODERATE 308A>T Lys103Ile
M0066278 PFDEKNJO_00012 16191 12 Skin 0.28 protein_coding synonymous_variant LOW 288T>C Pro96Pro
M0066279 PFDEKNJO_00012 16206 12 Skin 0.28 protein_coding synonymous_variant LOW 273G>A Gly91Gly
M0066280 PFDEKNJO_00012 16305 9 Skin 0.21 protein_coding synonymous_variant LOW 174C>T Thr58Thr
M0066281 PFDEKNJO_00012 16317 9 Skin 0.21 protein_coding synonymous_variant LOW 162C>T Pro54Pro
M0066282 PFDEKNJO_00012 16332 9 Skin 0.21 protein_coding synonymous_variant LOW 147G>T Gly49Gly
M0066283 PFDEKNJO_00012 16384 10 Skin 0.23 protein_coding missense_variant MODERATE 95C>T Ala32Val
M0066284 PFDEKNJO_00012 16458 11 Skin 0.26 protein_coding synonymous_variant LOW 21C>T Ile7Ile
M0066285 PFDEKNJO_00013 16692 5 Skin 0.12 protein_coding missense_variant MODERATE 311C>G Thr104Ser
M0066286 PFDEKNJO_00013 16694 5 Skin 0.12 protein_coding synonymous_variant LOW 309A>G Leu103Leu
M0066287 PFDEKNJO_00013 16714 5 Skin 0.12 protein_coding missense_variant MODERATE 289A>C Ile97Leu
M0066288 PFDEKNJO_00013 16717 5 Skin 0.12 protein_coding missense_variant MODERATE 286A>G Thr96Ala
M0066289 PFDEKNJO_00006 10009 4 Skin 0.09 protein_coding missense_variant MODERATE 796A>G Thr266Ala
M0066290 PFDEKNJO_00016 18322 6 Skin 0.14 protein_coding synonymous_variant LOW 2724A>G Arg908Arg
M0066291 PFDEKNJO_00016 18379 6 Skin 0.14 protein_coding synonymous_variant LOW 2667T>C Ser889Ser
M0066292 PFDEKNJO_00015 18106 7 Skin 0.16 protein_coding synonymous_variant LOW 91T>C Leu31Leu
M0066293 PFDEKNJO_00016 19764 3 Skin 0.07 protein_coding synonymous_variant LOW 1282C>T Leu428Leu
M0066294 PFDEKNJO_00019 22967 3 Skin 0.07 protein_coding missense_variant MODERATE 208G>C Glu70Gln
M0066295 PFDEKNJO_00006 10795 4 Skin 0.09 protein_coding missense_variant MODERATE 10G>A Asp4Asn
M0066296 PFDEKNJO_00008 12699 6 Skin 0.14 protein_coding synonymous_variant LOW 732A>G Glu244Glu
M0066297 PFDEKNJO_00008 13333 6 Skin 0.14 protein_coding missense_variant MODERATE 98T>C Leu33Ser
M0066298 PFDEKNJO_00008 13335 6 Skin 0.14 protein_coding missense_variant MODERATE 96G>T Glu32Asp
M0066299 PFDEKNJO_00009 13834 5 Skin 0.12 protein_coding missense_variant MODERATE 475A>C Lys159Gln
M0066300 PFDEKNJO_00010 14352 4 Skin 0.09 protein_coding synonymous_variant LOW 672T>C Pro224Pro
M0066301 PFDEKNJO_00010 14403 7 Skin 0.16 protein_coding synonymous_variant LOW 621C>T Asp207Asp
M0066302 PFDEKNJO_00012 15573 3 Skin 0.07 protein_coding synonymous_variant LOW 906C>T Leu302Leu
M0066303 PFDEKNJO_00012 15633 4 Skin 0.09 protein_coding synonymous_variant LOW 846G>A Gly282Gly
M0066304 PFDEKNJO_00012 16031 4 Skin 0.09 protein_coding missense_variant MODERATE 448G>A Val150Ile
M0066305 PFDEKNJO_00012 16074 4 Skin 0.09 protein_coding synonymous_variant LOW 405C>T Cys135Cys
M0066306 PFDEKNJO_00012 16078 4 Skin 0.09 protein_coding missense_variant MODERATE 401C>T Ala134Val
M0066307 PFDEKNJO_00012 16147 4 Skin 0.09 protein_coding missense_variant MODERATE 332C>T Thr111Ile
M0066308 PFDEKNJO_00012 16150 4 Skin 0.09 protein_coding missense_variant MODERATE 329A>T Gln110Leu
M0066309 PFDEKNJO_00012 16151 4 Skin 0.09 protein_coding missense_variant MODERATE 328C>A Gln110Lys
M0066310 PFDEKNJO_00012 16158 4 Skin 0.09 protein_coding missense_variant MODERATE 321C>A Asn107Lys
M0066311 PFDEKNJO_00012 16194 4 Skin 0.09 protein_coding synonymous_variant LOW 285G>A Gly95Gly
M0066312 PFDEKNJO_00012 16254 4 Skin 0.09 protein_coding synonymous_variant LOW 225C>T Gly75Gly
M0066313 PFDEKNJO_00012 16385 3 Skin 0.07 protein_coding missense_variant MODERATE 94G>A Ala32Thr
M0066314 PFDEKNJO_00012 16452 4 Skin 0.09 protein_coding synonymous_variant LOW 27T>C Asp9Asp
M0066315 PFDEKNJO_00012 16472 4 Skin 0.09 protein_coding missense_variant MODERATE 7A>C Asn3His
M0066316 PFDEKNJO_00013 16520 5 Skin 0.12 protein_coding synonymous_variant LOW 483A>G Glu161Glu
M0066317 PFDEKNJO_00013 16523 5 Skin 0.12 protein_coding missense_variant MODERATE 480G>A Met160Ile
M0066318 PFDEKNJO_00013 16534 5 Skin 0.12 protein_coding missense_variant MODERATE 469A>G Ile157Val
M0066319 PFDEKNJO_00013 16543 5 Skin 0.12 protein_coding missense_variant MODERATE 460A>G Lys154Glu
M0066320 PFDEKNJO_00013 16546 5 Skin 0.12 protein_coding missense_variant MODERATE 457C>A Gln153Lys
M0066321 PFDEKNJO_00013 16557 5 Skin 0.12 protein_coding missense_variant MODERATE 446A>T Tyr149Phe
M0066322 PFDEKNJO_00013 16587 5 Skin 0.12 protein_coding missense_variant MODERATE 416C>A Pro139His
M0066323 PFDEKNJO_00013 16589 5 Skin 0.12 protein_coding synonymous_variant LOW 414C>T Tyr138Tyr
M0066324 PFDEKNJO_00013 16624 4 Skin 0.09 protein_coding missense_variant MODERATE 379G>C Glu127Gln
M0066325 PFDEKNJO_00013 16631 4 Skin 0.09 protein_coding synonymous_variant LOW 372T>C Leu124Leu
M0066326 PFDEKNJO_00005 10958 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4619C>T None
M0066327 PFDEKNJO_00012 16108 3 Skin 0.07 protein_coding missense_variant MODERATE 371G>T Ser124Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term