Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2902
  Reference Plasmid   DP1808006749_bin.3__NODE_105_length_10307_cov_0.632641
  Reference Plasmid Size   10307
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0066742 DKBHGAMF_00007 8423 3 Skin 0.50 protein_coding synonymous_variant LOW 918T>C Tyr306Tyr
M0066743 DKBHGAMF_00007 8444 3 Skin 0.50 protein_coding synonymous_variant LOW 897T>C Cys299Cys
M0066744 DKBHGAMF_00007 8459 3 Skin 0.50 protein_coding synonymous_variant LOW 882T>C Asn294Asn
M0066745 DKBHGAMF_00007 8498 3 Skin 0.50 protein_coding synonymous_variant LOW 843C>T Asp281Asp
M0066746 DKBHGAMF_00007 8537 3 Skin 0.50 protein_coding synonymous_variant LOW 804C>A Gly268Gly
M0066747 DKBHGAMF_00007 8597 3 Skin 0.50 protein_coding synonymous_variant LOW 744C>G Gly248Gly
M0066748 DKBHGAMF_00007 8600 3 Skin 0.50 protein_coding synonymous_variant LOW 741C>G Val247Val
M0066749 DKBHGAMF_00007 8633 3 Skin 0.50 protein_coding synonymous_variant LOW 708G>C Val236Val
M0066750 DKBHGAMF_00007 8702 3 Skin 0.50 protein_coding synonymous_variant LOW 639G>C Gly213Gly
M0066751 DKBHGAMF_00007 9081 3 Skin 0.50 protein_coding missense_variant MODERATE 260G>A Arg87Lys
M0066752 DKBHGAMF_00007 9146 3 Skin 0.50 protein_coding synonymous_variant LOW 195A>C Ala65Ala
M0066753 DKBHGAMF_00007 9161 3 Skin 0.50 protein_coding synonymous_variant LOW 180G>A Lys60Lys
M0066754 DKBHGAMF_00007 9173 3 Skin 0.50 protein_coding synonymous_variant LOW 168C>G Arg56Arg
M0066755 DKBHGAMF_00007 9207 3 Skin 0.50 protein_coding missense_variant MODERATE 134G>T Gly45Val
M0066756 DKBHGAMF_00007 9251 3 Skin 0.50 protein_coding missense_variant MODERATE 90C>G Asp30Glu
M0066757 DKBHGAMF_00007 9254 3 Skin 0.50 protein_coding synonymous_variant LOW 87G>C Val29Val
M0066758 DKBHGAMF_00007 9260 3 Skin 0.50 protein_coding synonymous_variant LOW 81A>G Glu27Glu
M0066759 DKBHGAMF_00007 9305 3 Skin 0.50 protein_coding synonymous_variant LOW 36G>C Leu12Leu
M0066760 DKBHGAMF_00008 10033 3 Skin 0.50 protein_coding synonymous_variant LOW 447C>G Ala149Ala
M0066761 DKBHGAMF_00008 10060 3 Skin 0.50 protein_coding synonymous_variant LOW 474G>A Ala158Ala
M0066762 DKBHGAMF_00008 10063 3 Skin 0.50 protein_coding synonymous_variant LOW 477A>C Pro159Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term