Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2907
  Reference Plasmid   DP1808006750_bin.4__NODE_3298_length_2903_cov_0.808488
  Reference Plasmid Size   2903
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0066857 JMFBEDKC_00001 78 6 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -757A>G None
M0066858 JMFBEDKC_00001 79 6 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -756G>C None
M0066859 JMFBEDKC_00001 115 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -720A>G None
M0066860 JMFBEDKC_00001 190 6 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -645T>C None
M0066861 JMFBEDKC_00001 206 6 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -629A>G None
M0066862 JMFBEDKC_00001 212 6 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -623T>G None
M0066863 JMFBEDKC_00001 222 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -613A>C None
M0066864 JMFBEDKC_00001 266 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -569A>G None
M0066865 JMFBEDKC_00001 282 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -553T>C None
M0066866 JMFBEDKC_00001 425 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -410C>G None
M0066867 JMFBEDKC_00001 740 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -95A>G None
M0066868 JMFBEDKC_00002 2187 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -124A>T None
M0066869 JMFBEDKC_00002 2189 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -122G>C None
M0066870 JMFBEDKC_00002 2216 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -95T>C None
M0066871 JMFBEDKC_00002 2298 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -13C>A None
M0066872 JMFBEDKC_00002 2340 3 Skin 0.50 protein_coding synonymous_variant LOW 30A>C Arg10Arg
M0066873 JMFBEDKC_00002 2431 3 Skin 0.50 protein_coding synonymous_variant LOW 121C>T Leu41Leu
M0066874 JMFBEDKC_00002 2532 5 Skin 0.83 protein_coding synonymous_variant LOW 222C>T Tyr74Tyr
M0066875 JMFBEDKC_00002 2536 5 Skin 0.83 protein_coding synonymous_variant LOW 226A>C Arg76Arg
M0066876 JMFBEDKC_00002 2760 4 Skin 0.67 protein_coding missense_variant MODERATE 450G>C Glu150Asp
M0066877 JMFBEDKC_00001 2788 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *610T>G None
M0066878 JMFBEDKC_00001 2803 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *625G>T None
M0066879 JMFBEDKC_00001 2815 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *637C>T None
M0066880 JMFBEDKC_00001 2844 3 Skin 0.50 protein_coding downstream_gene_variant MODIFIER *666A>G None
M0066881 JMFBEDKC_00001 517 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -318A>G None
M0066882 JMFBEDKC_00001 540 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -295G>C None
M0066883 JMFBEDKC_00001 573 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -262A>C None
M0066884 JMFBEDKC_00001 628 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -207A>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term