Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2909
  Reference Plasmid   DP1808006750_bin.9__NODE_554_length_5850_cov_3.704225
  Reference Plasmid Size   5850
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0066904 OCMOIBEH_00001 1341 7 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -667T>C None
M0066905 OCMOIBEH_00003 1694 3 Skin 0.19 protein_coding synonymous_variant LOW 93G>A Ala31Ala
M0066906 OCMOIBEH_00003 1724 3 Skin 0.19 protein_coding synonymous_variant LOW 63T>C His21His
M0066907 OCMOIBEH_00003 1778 3 Skin 0.19 protein_coding synonymous_variant LOW 9T>C Pro3Pro
M0066908 OCMOIBEH_00003 1783 3 Skin 0.19 protein_coding missense_variant MODERATE 4G>C Ala2Pro
M0066909 OCMOIBEH_00004 2500 5 Skin 0.31 protein_coding synonymous_variant LOW 627T>C Asp209Asp
M0066910 OCMOIBEH_00004 2515 5 Skin 0.31 protein_coding synonymous_variant LOW 642G>A Pro214Pro
M0066911 OCMOIBEH_00004 2536 5 Skin 0.31 protein_coding synonymous_variant LOW 663T>C Pro221Pro
M0066912 OCMOIBEH_00004 2553 5 Skin 0.31 protein_coding missense_variant MODERATE 680A>G Asn227Ser
M0066913 OCMOIBEH_00004 2593 5 Skin 0.31 protein_coding synonymous_variant LOW 720A>G Arg240Arg
M0066914 OCMOIBEH_00004 2599 5 Skin 0.31 protein_coding synonymous_variant LOW 726T>C Ser242Ser
M0066915 OCMOIBEH_00005 3326 5 Skin 0.31 protein_coding synonymous_variant LOW 111A>G Val37Val
M0066916 OCMOIBEH_00005 3329 5 Skin 0.31 protein_coding synonymous_variant LOW 114C>T Phe38Phe
M0066917 OCMOIBEH_00005 3347 5 Skin 0.31 protein_coding synonymous_variant LOW 132A>G Arg44Arg
M0066918 OCMOIBEH_00005 3662 5 Skin 0.31 protein_coding synonymous_variant LOW 447T>C Pro149Pro
M0066919 OCMOIBEH_00004 2140 3 Skin 0.19 protein_coding synonymous_variant LOW 267C>T Gly89Gly
M0066920 OCMOIBEH_00004 2548 3 Skin 0.19 protein_coding synonymous_variant LOW 675C>T Ala225Ala
M0066921 OCMOIBEH_00004 2596 3 Skin 0.19 protein_coding synonymous_variant LOW 723C>T Leu241Leu
M0066922 OCMOIBEH_00004 2782 3 Skin 0.19 protein_coding synonymous_variant LOW 909A>G Glu303Glu
M0066923 OCMOIBEH_00004 3190 3 Skin 0.19 protein_coding synonymous_variant LOW 1317G>A Arg439Arg
M0066924 OCMOIBEH_00004 3200 3 Skin 0.19 protein_coding missense_variant MODERATE 1327G>A Glu443Lys
M0066925 OCMOIBEH_00004 3202 3 Skin 0.19 protein_coding missense_variant MODERATE 1329G>C Glu443Asp
M0066926 OCMOIBEH_00005 3407 3 Skin 0.19 protein_coding synonymous_variant LOW 192G>A Lys64Lys
M0066927 OCMOIBEH_00005 3482 3 Skin 0.19 protein_coding synonymous_variant LOW 267G>A Gln89Gln
M0066928 OCMOIBEH_00005 3998 3 Skin 0.19 protein_coding synonymous_variant LOW 783C>A Pro261Pro
M0066929 OCMOIBEH_00005 4037 3 Skin 0.19 protein_coding synonymous_variant LOW 822C>T Asp274Asp
M0066930 OCMOIBEH_00005 4070 3 Skin 0.19 protein_coding synonymous_variant LOW 855A>G Glu285Glu
M0066931 OCMOIBEH_00005 4132 3 Skin 0.19 protein_coding missense_variant MODERATE 917A>C Lys306Thr
M0066932 OCMOIBEH_00005 4136 3 Skin 0.19 protein_coding synonymous_variant LOW 921A>G Leu307Leu
M0066933 OCMOIBEH_00005 4166 3 Skin 0.19 protein_coding synonymous_variant LOW 951C>G Pro317Pro
M0066934 OCMOIBEH_00005 4169 3 Skin 0.19 protein_coding synonymous_variant LOW 954T>G Gly318Gly
M0066935 OCMOIBEH_00005 4184 3 Skin 0.19 protein_coding synonymous_variant LOW 969C>G Pro323Pro
M0066936 OCMOIBEH_00005 4217 3 Skin 0.19 protein_coding synonymous_variant LOW 1002T>C Ser334Ser
M0066937 OCMOIBEH_00005 4219 3 Skin 0.19 protein_coding missense_variant MODERATE 1004C>T Ala335Val
M0066938 OCMOIBEH_00005 4271 3 Skin 0.19 protein_coding synonymous_variant LOW 1056C>T Phe352Phe
M0066939 OCMOIBEH_00005 4283 3 Skin 0.19 protein_coding synonymous_variant LOW 1068G>A Arg356Arg
M0066940 OCMOIBEH_00006 4349 3 Skin 0.19 protein_coding missense_variant MODERATE 457C>A His153Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term