Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2925
  Reference Plasmid   DP1808006803_bin.1__NODE_211_length_4938_cov_0.690019
  Reference Plasmid Size   4938
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067052 JKBPJJLG_00001 633 4 Skin 0.29 protein_coding synonymous_variant LOW 489C>T Tyr163Tyr
M0067053 JKBPJJLG_00001 717 4 Skin 0.29 protein_coding synonymous_variant LOW 573T>A Gly191Gly
M0067054 JKBPJJLG_00001 718 4 Skin 0.29 protein_coding missense_variant MODERATE 574G>A Val192Ile
M0067055 JKBPJJLG_00001 720 4 Skin 0.29 protein_coding synonymous_variant LOW 576T>C Val192Val
M0067056 JKBPJJLG_00001 726 4 Skin 0.29 protein_coding synonymous_variant LOW 582A>G Glu194Glu
M0067057 JKBPJJLG_00001 729 4 Skin 0.29 protein_coding synonymous_variant LOW 585A>G Lys195Lys
M0067058 JKBPJJLG_00001 732 4 Skin 0.29 protein_coding synonymous_variant LOW 588G>C Val196Val
M0067059 JKBPJJLG_00001 742 4 Skin 0.29 protein_coding missense_variant MODERATE 598G>A Val200Ile
M0067060 JKBPJJLG_00001 744 4 Skin 0.29 protein_coding synonymous_variant LOW 600C>T Val200Val
M0067061 JKBPJJLG_00001 810 4 Skin 0.29 protein_coding synonymous_variant LOW 666T>C Asn222Asn
M0067062 JKBPJJLG_00002 860 4 Skin 0.29 protein_coding synonymous_variant LOW 21C>T Thr7Thr
M0067063 JKBPJJLG_00002 893 4 Skin 0.29 protein_coding synonymous_variant LOW 54C>T Leu18Leu
M0067064 JKBPJJLG_00002 908 4 Skin 0.29 protein_coding synonymous_variant LOW 69T>C Phe23Phe
M0067065 JKBPJJLG_00002 911 4 Skin 0.29 protein_coding synonymous_variant LOW 72C>T Ser24Ser
M0067066 JKBPJJLG_00002 922 4 Skin 0.29 protein_coding missense_variant MODERATE 83G>C Gly28Ala
M0067067 JKBPJJLG_00001 1067 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *230A>C None
M0067068 JKBPJJLG_00003 1169 6 Skin 0.43 protein_coding synonymous_variant LOW 1476C>G Pro492Pro
M0067069 JKBPJJLG_00003 1199 6 Skin 0.43 protein_coding synonymous_variant LOW 1446C>T Phe482Phe
M0067070 JKBPJJLG_00003 1241 6 Skin 0.43 protein_coding synonymous_variant LOW 1404G>T Ala468Ala
M0067071 JKBPJJLG_00003 1265 6 Skin 0.43 protein_coding synonymous_variant LOW 1380C>T Ile460Ile
M0067072 JKBPJJLG_00003 1283 6 Skin 0.43 protein_coding synonymous_variant LOW 1362C>T Gly454Gly
M0067073 JKBPJJLG_00003 1295 6 Skin 0.43 protein_coding synonymous_variant LOW 1350C>T Gly450Gly
M0067074 JKBPJJLG_00003 1298 6 Skin 0.43 protein_coding synonymous_variant LOW 1347T>C Gly449Gly
M0067075 JKBPJJLG_00003 1301 6 Skin 0.43 protein_coding synonymous_variant LOW 1344G>T Arg448Arg
M0067076 JKBPJJLG_00003 1304 6 Skin 0.43 protein_coding synonymous_variant LOW 1341G>C Ala447Ala
M0067077 JKBPJJLG_00003 1340 6 Skin 0.43 protein_coding synonymous_variant LOW 1305G>C Val435Val
M0067078 JKBPJJLG_00003 1487 5 Skin 0.36 protein_coding synonymous_variant LOW 1158T>C Ile386Ile
M0067079 JKBPJJLG_00003 1496 5 Skin 0.36 protein_coding synonymous_variant LOW 1149G>C Leu383Leu
M0067080 JKBPJJLG_00003 2150 5 Skin 0.36 protein_coding synonymous_variant LOW 495A>G Ala165Ala
M0067081 JKBPJJLG_00003 2156 4 Skin 0.29 protein_coding synonymous_variant LOW 489T>C Ser163Ser
M0067082 JKBPJJLG_00003 2165 5 Skin 0.36 protein_coding synonymous_variant LOW 480C>G Pro160Pro
M0067083 JKBPJJLG_00003 2171 5 Skin 0.36 protein_coding synonymous_variant LOW 474C>T Ile158Ile
M0067084 JKBPJJLG_00003 2180 7 Skin 0.50 protein_coding synonymous_variant LOW 465T>C Gly155Gly
M0067085 JKBPJJLG_00003 2186 5 Skin 0.36 protein_coding synonymous_variant LOW 459G>T Gly153Gly
M0067086 JKBPJJLG_00003 2210 5 Skin 0.36 protein_coding synonymous_variant LOW 435T>G Pro145Pro
M0067087 JKBPJJLG_00003 2252 8 Skin 0.57 protein_coding synonymous_variant LOW 393T>C Ile131Ile
M0067088 JKBPJJLG_00003 2282 4 Skin 0.29 protein_coding synonymous_variant LOW 363A>G Glu121Glu
M0067089 JKBPJJLG_00003 2726 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -82T>C None
M0067090 JKBPJJLG_00004 2821 4 Skin 0.29 protein_coding synonymous_variant LOW 930G>A Gly310Gly
M0067091 JKBPJJLG_00004 2824 4 Skin 0.29 protein_coding synonymous_variant LOW 927A>G Lys309Lys
M0067092 JKBPJJLG_00004 2919 4 Skin 0.29 protein_coding missense_variant MODERATE 832C>A Leu278Met
M0067093 JKBPJJLG_00003 3808 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1164G>A None
M0067094 JKBPJJLG_00005 3931 4 Skin 0.29 protein_coding synonymous_variant LOW 757C>T Leu253Leu
M0067095 JKBPJJLG_00005 3935 4 Skin 0.29 protein_coding synonymous_variant LOW 753C>T Leu251Leu
M0067096 JKBPJJLG_00001 427 3 Skin 0.21 protein_coding synonymous_variant LOW 283T>C Leu95Leu
M0067097 JKBPJJLG_00003 1952 5 Skin 0.36 protein_coding synonymous_variant LOW 693C>T Pro231Pro
M0067098 JKBPJJLG_00003 2000 5 Skin 0.36 protein_coding synonymous_variant LOW 645C>T His215His
M0067099 JKBPJJLG_00003 2032 5 Skin 0.36 protein_coding synonymous_variant LOW 613T>C Leu205Leu
M0067100 JKBPJJLG_00003 2033 5 Skin 0.36 protein_coding synonymous_variant LOW 612T>G Leu204Leu
M0067101 JKBPJJLG_00003 2035 5 Skin 0.36 protein_coding missense_variant MODERATE 610C>T Leu204Phe
M0067102 JKBPJJLG_00003 2101 5 Skin 0.36 protein_coding missense_variant MODERATE 544C>A Leu182Met
M0067103 JKBPJJLG_00003 2102 3 Skin 0.21 protein_coding synonymous_variant LOW 543G>T Gly181Gly
M0067104 JKBPJJLG_00003 2108 3 Skin 0.21 protein_coding synonymous_variant LOW 537A>T Ile179Ile
M0067105 JKBPJJLG_00003 2222 3 Skin 0.21 protein_coding synonymous_variant LOW 423C>T Tyr141Tyr
M0067106 JKBPJJLG_00003 2263 3 Skin 0.21 protein_coding missense_variant MODERATE 382G>A Val128Ile
M0067107 JKBPJJLG_00003 2288 3 Skin 0.21 protein_coding synonymous_variant LOW 357C>G Arg119Arg
M0067108 JKBPJJLG_00003 2294 3 Skin 0.21 protein_coding synonymous_variant LOW 351C>A Pro117Pro
M0067109 JKBPJJLG_00003 2492 7 Skin 0.50 protein_coding synonymous_variant LOW 153T>C Phe51Phe
M0067110 JKBPJJLG_00003 2615 5 Skin 0.36 protein_coding synonymous_variant LOW 30A>G Pro10Pro
M0067111 JKBPJJLG_00004 3028 4 Skin 0.29 protein_coding synonymous_variant LOW 723C>G Gly241Gly
M0067112 JKBPJJLG_00004 3175 9 Skin 0.64 protein_coding synonymous_variant LOW 576G>C Leu192Leu
M0067113 JKBPJJLG_00004 3310 7 Skin 0.50 protein_coding synonymous_variant LOW 441C>T Thr147Thr
M0067114 JKBPJJLG_00004 3340 8 Skin 0.57 protein_coding synonymous_variant LOW 411G>A Glu137Glu
M0067115 JKBPJJLG_00004 3352 8 Skin 0.57 protein_coding synonymous_variant LOW 399G>C Thr133Thr
M0067116 JKBPJJLG_00004 3366 9 Skin 0.64 protein_coding missense_variant MODERATE 385C>G Pro129Ala
M0067117 JKBPJJLG_00004 3367 9 Skin 0.64 protein_coding synonymous_variant LOW 384C>T Ala128Ala
M0067118 JKBPJJLG_00004 3373 9 Skin 0.64 protein_coding synonymous_variant LOW 378T>C Val126Val
M0067119 JKBPJJLG_00004 3374 9 Skin 0.64 protein_coding missense_variant MODERATE 377T>C Val126Ala
M0067120 JKBPJJLG_00004 3376 9 Skin 0.64 protein_coding synonymous_variant LOW 375G>A Ala125Ala
M0067121 JKBPJJLG_00004 3382 10 Skin 0.71 protein_coding synonymous_variant LOW 369G>A Glu123Glu
M0067122 JKBPJJLG_00004 3391 10 Skin 0.71 protein_coding synonymous_variant LOW 360C>G Gly120Gly
M0067123 JKBPJJLG_00003 3776 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1132T>A None
M0067124 JKBPJJLG_00003 4822 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2178C>T None
M0067125 JKBPJJLG_00003 4848 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2204A>G None
M0067126 JKBPJJLG_00003 4786 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2142C>A None
M0067127 JKBPJJLG_00004 3231 6 Skin 0.43 protein_coding missense_variant MODERATE 520G>A Ala174Thr
M0067128 JKBPJJLG_00004 3234 6 Skin 0.43 protein_coding missense_variant MODERATE 517G>A Val173Ile
M0067129 JKBPJJLG_00004 3328 5 Skin 0.36 protein_coding synonymous_variant LOW 423C>G Val141Val
M0067130 JKBPJJLG_00004 3384 7 Skin 0.50 protein_coding missense_variant MODERATE 367G>A Glu123Lys
M0067131 JKBPJJLG_00003 2393 3 Skin 0.21 protein_coding synonymous_variant LOW 252A>C Gly84Gly
M0067132 JKBPJJLG_00003 1175 4 Skin 0.29 protein_coding synonymous_variant LOW 1470T>C Gly490Gly
M0067133 JKBPJJLG_00003 1184 4 Skin 0.29 protein_coding synonymous_variant LOW 1461C>T Pro487Pro
M0067134 JKBPJJLG_00003 1235 4 Skin 0.29 protein_coding synonymous_variant LOW 1410A>G Lys470Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term