Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2926
  Reference Plasmid   DP1808006806_bin.3__NODE_164_length_8080_cov_9.708558
  Reference Plasmid Size   8080
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067135 KEECMIFA_00001 1804 89 Skin 0.59 protein_coding synonymous_variant LOW 369T>C Ile123Ile
M0067136 KEECMIFA_00005 4187 20 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -213G>A None
M0067137 KEECMIFA_00005 4189 22 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -211G>A None
M0067138 KEECMIFA_00005 4199 20 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -201C>T None
M0067139 KEECMIFA_00001 117 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1319T>C None
M0067140 KEECMIFA_00001 135 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1301G>A None
M0067141 KEECMIFA_00001 165 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1271G>A None
M0067142 KEECMIFA_00001 199 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1237T>C None
M0067143 KEECMIFA_00001 216 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1220G>A None
M0067144 KEECMIFA_00001 302 21 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1134G>A None
M0067145 KEECMIFA_00001 342 21 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -1094G>A None
M0067146 KEECMIFA_00007 6205 19 Skin 0.13 protein_coding missense_variant MODERATE 526C>T Leu176Phe
M0067147 KEECMIFA_00005 4264 19 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -136G>A None
M0067148 KEECMIFA_00006 5185 39 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -87C>A None
M0067149 KEECMIFA_00008 7087 11 Skin 0.07 protein_coding missense_variant MODERATE 505A>G Thr169Ala
M0067150 KEECMIFA_00001 1686 14 Skin 0.09 protein_coding missense_variant MODERATE 251T>G Val84Gly
M0067151 KEECMIFA_00002 2531 35 Skin 0.23 protein_coding synonymous_variant LOW 402T>C Ala134Ala
M0067152 KEECMIFA_00002 3190 22 Skin 0.14 protein_coding missense_variant MODERATE 1061A>G His354Arg
M0067153 KEECMIFA_00003 3515 18 Skin 0.12 protein_coding missense_variant MODERATE 70G>A Glu24Lys
M0067154 KEECMIFA_00003 3974 23 Skin 0.15 protein_coding missense_variant MODERATE 529A>G Asn177Asp
M0067155 KEECMIFA_00005 4762 10 Skin 0.07 protein_coding synonymous_variant LOW 363C>T Ala121Ala
M0067156 KEECMIFA_00006 5358 11 Skin 0.07 protein_coding synonymous_variant LOW 87G>A Val29Val
M0067157 KEECMIFA_00006 5441 22 Skin 0.14 protein_coding stop_lost&splice_region_variant HIGH 170A>G Ter57Trpext*?
M0067158 KEECMIFA_00001 797 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -639A>G None
M0067159 KEECMIFA_00001 804 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -632C>T None
M0067160 KEECMIFA_00001 831 16 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -605C>A None
M0067161 KEECMIFA_00001 1139 25 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -297C>T None
M0067162 KEECMIFA_00001 1396 23 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -40G>A None
M0067163 KEECMIFA_00001 1441 21 Skin 0.14 protein_coding synonymous_variant LOW 6G>A Lys2Lys
M0067164 KEECMIFA_00001 1521 22 Skin 0.14 protein_coding missense_variant MODERATE 86G>A Ser29Asn
M0067165 KEECMIFA_00001 1759 24 Skin 0.16 protein_coding synonymous_variant LOW 324T>C Arg108Arg
M0067166 KEECMIFA_00006 5147 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -125G>A None
M0067167 KEECMIFA_00006 5184 10 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -88C>T None
M0067168 KEECMIFA_00006 5186 10 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -86C>G None
M0067169 KEECMIFA_00006 5191 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -81C>A None
M0067170 KEECMIFA_00006 5192 10 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -80C>T None
M0067171 KEECMIFA_00008 6426 7 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -157G>A None
M0067172 KEECMIFA_00008 6720 8 Skin 0.05 protein_coding synonymous_variant LOW 138A>G Ser46Ser
M0067173 KEECMIFA_00008 6727 8 Skin 0.05 protein_coding missense_variant MODERATE 145A>G Thr49Ala
M0067174 KEECMIFA_00008 7408 5 Skin 0.03 protein_coding missense_variant MODERATE 826C>T Pro276Ser
M0067175 KEECMIFA_00008 7863 6 Skin 0.04 protein_coding synonymous_variant LOW 1281C>T Thr427Thr
M0067176 KEECMIFA_00008 7951 5 Skin 0.03 protein_coding missense_variant MODERATE 1369G>C Glu457Gln
M0067177 KEECMIFA_00008 7961 5 Skin 0.03 protein_coding missense_variant MODERATE 1379G>A Gly460Asp
M0067178 KEECMIFA_00008 8016 3 Skin 0.02 protein_coding synonymous_variant LOW 1434C>A Ala478Ala
M0067179 KEECMIFA_00005 4160 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -240T>C None
M0067180 KEECMIFA_00001 585 17 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -851C>T None
M0067181 KEECMIFA_00001 603 17 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -833A>G None
M0067182 KEECMIFA_00001 702 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -734C>T None
M0067183 KEECMIFA_00001 717 12 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -719C>T None
M0067184 KEECMIFA_00001 1316 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -120C>T None
M0067185 KEECMIFA_00007 6126 5 Skin 0.03 protein_coding missense_variant MODERATE 447G>A Met149Ile
M0067186 KEECMIFA_00002 3004 6 Skin 0.04 protein_coding missense_variant MODERATE 875T>C Ile292Thr
M0067187 KEECMIFA_00001 1543 3 Skin 0.02 protein_coding synonymous_variant LOW 108C>A Pro36Pro
M0067188 KEECMIFA_00005 4136 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -264C>T None
M0067189 KEECMIFA_00005 4236 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -164G>A None
M0067190 KEECMIFA_00003 4007 5 Skin 0.03 protein_coding missense_variant MODERATE 562C>T Leu188Phe
M0067191 KEECMIFA_00001 651 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -785G>T None
M0067192 KEECMIFA_00002 2105 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -25G>A None
M0067193 KEECMIFA_00002 2645 3 Skin 0.02 protein_coding synonymous_variant LOW 516T>C Gly172Gly
M0067194 KEECMIFA_00002 2696 3 Skin 0.02 protein_coding synonymous_variant LOW 567C>T Gly189Gly
M0067195 KEECMIFA_00002 2769 3 Skin 0.02 protein_coding missense_variant MODERATE 640A>G Lys214Glu
M0067196 KEECMIFA_00002 2780 3 Skin 0.02 protein_coding synonymous_variant LOW 651T>C Asp217Asp
M0067197 KEECMIFA_00002 2891 3 Skin 0.02 protein_coding synonymous_variant LOW 762C>G Arg254Arg
M0067198 KEECMIFA_00002 2979 3 Skin 0.02 protein_coding missense_variant MODERATE 850G>T Ala284Ser
M0067199 KEECMIFA_00002 3026 3 Skin 0.02 protein_coding synonymous_variant LOW 897G>A Glu299Glu
M0067200 KEECMIFA_00002 3098 3 Skin 0.02 protein_coding synonymous_variant LOW 969C>T Ile323Ile
M0067201 KEECMIFA_00002 3101 3 Skin 0.02 protein_coding synonymous_variant LOW 972C>A Gly324Gly
M0067202 KEECMIFA_00002 3116 3 Skin 0.02 protein_coding synonymous_variant LOW 987A>C Ala329Ala
M0067203 KEECMIFA_00005 4154 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -246T>C None
M0067204 KEECMIFA_00001 1222 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -214C>T None
M0067205 KEECMIFA_00001 1271 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -165G>A None
M0067206 KEECMIFA_00002 3068 3 Skin 0.02 protein_coding synonymous_variant LOW 939G>A Val313Val
M0067207 KEECMIFA_00001 1624 3 Skin 0.02 protein_coding synonymous_variant LOW 189T>C Ile63Ile
M0067208 KEECMIFA_00001 1654 3 Skin 0.02 protein_coding synonymous_variant LOW 219T>C Ser73Ser
M0067209 KEECMIFA_00001 1659 3 Skin 0.02 protein_coding missense_variant MODERATE 224G>A Gly75Asp
M0067210 KEECMIFA_00001 1663 3 Skin 0.02 protein_coding synonymous_variant LOW 228G>A Glu76Glu
M0067211 KEECMIFA_00001 1681 3 Skin 0.02 protein_coding synonymous_variant LOW 246T>C Ala82Ala
M0067212 KEECMIFA_00001 1690 3 Skin 0.02 protein_coding synonymous_variant LOW 255G>A Arg85Arg
M0067213 KEECMIFA_00002 2597 5 Skin 0.03 protein_coding synonymous_variant LOW 468C>A Gly156Gly
M0067214 KEECMIFA_00003 4011 5 Skin 0.03 protein_coding stop_gained HIGH 566G>A Trp189*
M0067215 KEECMIFA_00003 3538 3 Skin 0.02 protein_coding missense_variant MODERATE 93C>G Ser31Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
KEECMIFA_00008 AXM07280.1|CE4 100 0 1 497 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term