Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2928
  Reference Plasmid   DP1808006817_bin.1__NODE_233_length_5473_cov_0.764793
  Reference Plasmid Size   5473
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067218 IBCKLHEI_00001 1198 5 Skin 0.17 protein_coding synonymous_variant LOW 168C>T Gly56Gly
M0067219 IBCKLHEI_00001 1201 4 Skin 0.14 protein_coding synonymous_variant LOW 165C>G Val55Val
M0067220 IBCKLHEI_00001 1286 5 Skin 0.17 protein_coding missense_variant MODERATE 80A>G Gln27Arg
M0067221 IBCKLHEI_00002 1428 13 Skin 0.45 protein_coding missense_variant MODERATE 930C>A Asp310Glu
M0067222 IBCKLHEI_00002 1491 19 Skin 0.66 protein_coding synonymous_variant LOW 867T>C Pro289Pro
M0067223 IBCKLHEI_00002 1521 22 Skin 0.76 protein_coding synonymous_variant LOW 837T>C Ala279Ala
M0067224 IBCKLHEI_00002 1577 9 Skin 0.31 protein_coding missense_variant MODERATE 781T>C Ser261Pro
M0067225 IBCKLHEI_00002 1580 9 Skin 0.31 protein_coding missense_variant MODERATE 778G>A Ala260Thr
M0067226 IBCKLHEI_00002 1600 9 Skin 0.31 protein_coding missense_variant MODERATE 758G>A Ser253Asn
M0067227 IBCKLHEI_00002 1602 14 Skin 0.48 protein_coding synonymous_variant LOW 756A>G Pro252Pro
M0067228 IBCKLHEI_00002 1605 14 Skin 0.48 protein_coding synonymous_variant LOW 753G>A Val251Val
M0067229 IBCKLHEI_00002 1797 14 Skin 0.48 protein_coding synonymous_variant LOW 561A>G Leu187Leu
M0067230 IBCKLHEI_00002 1878 9 Skin 0.31 protein_coding synonymous_variant LOW 480C>T Asp160Asp
M0067231 IBCKLHEI_00002 1887 13 Skin 0.45 protein_coding synonymous_variant LOW 471T>C Ser157Ser
M0067232 IBCKLHEI_00002 1928 17 Skin 0.59 protein_coding missense_variant MODERATE 430C>T Pro144Ser
M0067233 IBCKLHEI_00002 1947 10 Skin 0.34 protein_coding synonymous_variant LOW 411T>C Arg137Arg
M0067234 IBCKLHEI_00002 2216 3 Skin 0.10 protein_coding missense_variant MODERATE 142C>A Leu48Ile
M0067235 IBCKLHEI_00002 2242 24 Skin 0.83 protein_coding missense_variant MODERATE 116T>C Leu39Pro
M0067236 IBCKLHEI_00002 2250 11 Skin 0.38 protein_coding synonymous_variant LOW 108A>G Thr36Thr
M0067237 IBCKLHEI_00002 2269 4 Skin 0.14 protein_coding missense_variant MODERATE 89A>G Gln30Arg
M0067238 IBCKLHEI_00002 2338 19 Skin 0.66 protein_coding missense_variant MODERATE 20A>G His7Arg
M0067239 IBCKLHEI_00002 2347 18 Skin 0.62 protein_coding missense_variant MODERATE 11C>T Pro4Leu
M0067240 IBCKLHEI_00001 2395 13 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1030G>A None
M0067241 IBCKLHEI_00001 2399 13 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1034C>T None
M0067242 IBCKLHEI_00001 2491 10 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -1126C>T None
M0067243 IBCKLHEI_00001 2522 14 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -1157G>A None
M0067244 IBCKLHEI_00001 2532 9 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1167C>A None
M0067245 IBCKLHEI_00001 2533 9 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1168A>G None
M0067246 IBCKLHEI_00001 2541 15 Skin 0.52 protein_coding upstream_gene_variant MODIFIER -1176G>C None
M0067247 IBCKLHEI_00003 2563 6 Skin 0.21 protein_coding synonymous_variant LOW 1443C>G Pro481Pro
M0067248 IBCKLHEI_00003 2566 11 Skin 0.38 protein_coding synonymous_variant LOW 1440C>T Arg480Arg
M0067249 IBCKLHEI_00003 2581 13 Skin 0.45 protein_coding synonymous_variant LOW 1425T>C Gly475Gly
M0067250 IBCKLHEI_00003 2692 9 Skin 0.31 protein_coding synonymous_variant LOW 1314T>C Asp438Asp
M0067251 IBCKLHEI_00003 2707 9 Skin 0.31 protein_coding synonymous_variant LOW 1299C>T Arg433Arg
M0067252 IBCKLHEI_00003 2737 5 Skin 0.17 protein_coding synonymous_variant LOW 1269A>G Ser423Ser
M0067253 IBCKLHEI_00003 2758 3 Skin 0.10 protein_coding synonymous_variant LOW 1248A>G Ala416Ala
M0067254 IBCKLHEI_00003 2785 4 Skin 0.14 protein_coding synonymous_variant LOW 1221T>C Arg407Arg
M0067255 IBCKLHEI_00003 2806 3 Skin 0.10 protein_coding synonymous_variant LOW 1200G>A Val400Val
M0067256 IBCKLHEI_00003 2809 4 Skin 0.14 protein_coding synonymous_variant LOW 1197C>A Ala399Ala
M0067257 IBCKLHEI_00003 2846 7 Skin 0.24 protein_coding missense_variant MODERATE 1160T>A Leu387Gln
M0067258 IBCKLHEI_00003 2851 7 Skin 0.24 protein_coding synonymous_variant LOW 1155A>G Gly385Gly
M0067259 IBCKLHEI_00003 2875 8 Skin 0.28 protein_coding synonymous_variant LOW 1131T>C Gly377Gly
M0067260 IBCKLHEI_00003 2893 3 Skin 0.10 protein_coding synonymous_variant LOW 1113A>C Gly371Gly
M0067261 IBCKLHEI_00003 2908 3 Skin 0.10 protein_coding synonymous_variant LOW 1098A>C Gly366Gly
M0067262 IBCKLHEI_00003 2923 9 Skin 0.31 protein_coding synonymous_variant LOW 1083G>A Gly361Gly
M0067263 IBCKLHEI_00003 2929 3 Skin 0.10 protein_coding synonymous_variant LOW 1077C>G Gly359Gly
M0067264 IBCKLHEI_00003 2932 3 Skin 0.10 protein_coding synonymous_variant LOW 1074T>C Ala358Ala
M0067265 IBCKLHEI_00003 2956 3 Skin 0.10 protein_coding synonymous_variant LOW 1050T>C Arg350Arg
M0067266 IBCKLHEI_00003 2968 6 Skin 0.21 protein_coding synonymous_variant LOW 1038T>G Val346Val
M0067267 IBCKLHEI_00003 2974 3 Skin 0.10 protein_coding synonymous_variant LOW 1032T>C Gly344Gly
M0067268 IBCKLHEI_00003 2995 9 Skin 0.31 protein_coding synonymous_variant LOW 1011T>C Gly337Gly
M0067269 IBCKLHEI_00003 2998 3 Skin 0.10 protein_coding synonymous_variant LOW 1008A>G Ala336Ala
M0067270 IBCKLHEI_00003 2999 3 Skin 0.10 protein_coding missense_variant MODERATE 1007C>T Ala336Val
M0067271 IBCKLHEI_00003 3005 3 Skin 0.10 protein_coding missense_variant MODERATE 1001C>T Ala334Val
M0067272 IBCKLHEI_00003 3013 3 Skin 0.10 protein_coding synonymous_variant LOW 993C>T Asp331Asp
M0067273 IBCKLHEI_00003 3097 6 Skin 0.21 protein_coding synonymous_variant LOW 909C>T Gly303Gly
M0067274 IBCKLHEI_00003 3247 5 Skin 0.17 protein_coding synonymous_variant LOW 759T>C Arg253Arg
M0067275 IBCKLHEI_00003 3304 7 Skin 0.24 protein_coding synonymous_variant LOW 702G>T Leu234Leu
M0067276 IBCKLHEI_00003 3316 4 Skin 0.14 protein_coding synonymous_variant LOW 690T>C Arg230Arg
M0067277 IBCKLHEI_00003 3613 12 Skin 0.41 protein_coding synonymous_variant LOW 393A>G Pro131Pro
M0067278 IBCKLHEI_00004 382 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3887G>A None
M0067279 IBCKLHEI_00004 642 10 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -3627G>T None
M0067280 IBCKLHEI_00001 820 3 Skin 0.10 protein_coding synonymous_variant LOW 546T>C Pro182Pro
M0067281 IBCKLHEI_00001 844 11 Skin 0.38 protein_coding synonymous_variant LOW 522T>A Leu174Leu
M0067282 IBCKLHEI_00001 847 11 Skin 0.38 protein_coding synonymous_variant LOW 519T>C Arg173Arg
M0067283 IBCKLHEI_00001 916 3 Skin 0.10 protein_coding synonymous_variant LOW 450C>T Asp150Asp
M0067284 IBCKLHEI_00001 964 10 Skin 0.34 protein_coding synonymous_variant LOW 402T>C Gly134Gly
M0067285 IBCKLHEI_00002 2301 17 Skin 0.59 protein_coding synonymous_variant LOW 57G>A Ala19Ala
M0067286 IBCKLHEI_00001 2472 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1107A>G None
M0067287 IBCKLHEI_00002 1681 8 Skin 0.28 protein_coding missense_variant MODERATE 677G>A Arg226Gln
M0067288 IBCKLHEI_00002 1695 6 Skin 0.21 protein_coding synonymous_variant LOW 663C>T Asp221Asp
M0067289 IBCKLHEI_00002 1734 6 Skin 0.21 protein_coding synonymous_variant LOW 624T>C Pro208Pro
M0067290 IBCKLHEI_00002 1746 6 Skin 0.21 protein_coding synonymous_variant LOW 612C>T Gly204Gly
M0067291 IBCKLHEI_00002 1753 6 Skin 0.21 protein_coding missense_variant MODERATE 605T>C Val202Ala
M0067292 IBCKLHEI_00002 1754 6 Skin 0.21 protein_coding missense_variant MODERATE 604G>A Val202Ile
M0067293 IBCKLHEI_00002 1761 6 Skin 0.21 protein_coding synonymous_variant LOW 597A>G Arg199Arg
M0067294 IBCKLHEI_00002 1811 11 Skin 0.38 protein_coding missense_variant MODERATE 547A>C Lys183Gln
M0067295 IBCKLHEI_00002 1900 5 Skin 0.17 protein_coding missense_variant MODERATE 458A>G Asn153Ser
M0067296 IBCKLHEI_00002 1987 6 Skin 0.21 protein_coding missense_variant MODERATE 371C>A Ala124Asp
M0067297 IBCKLHEI_00002 2022 6 Skin 0.21 protein_coding synonymous_variant LOW 336G>A Gly112Gly
M0067298 IBCKLHEI_00002 2077 11 Skin 0.38 protein_coding missense_variant MODERATE 281T>C Val94Ala
M0067299 IBCKLHEI_00002 2100 4 Skin 0.14 protein_coding synonymous_variant LOW 258C>T Ala86Ala
M0067300 IBCKLHEI_00002 2148 16 Skin 0.55 protein_coding synonymous_variant LOW 210G>A Glu70Glu
M0067301 IBCKLHEI_00002 2151 15 Skin 0.52 protein_coding synonymous_variant LOW 207T>C Thr69Thr
M0067302 IBCKLHEI_00002 2153 10 Skin 0.34 protein_coding missense_variant MODERATE 205A>G Thr69Ala
M0067303 IBCKLHEI_00002 2157 6 Skin 0.21 protein_coding synonymous_variant LOW 201C>T Thr67Thr
M0067304 IBCKLHEI_00002 2181 6 Skin 0.21 protein_coding synonymous_variant LOW 177C>T Leu59Leu
M0067305 IBCKLHEI_00002 2193 15 Skin 0.52 protein_coding synonymous_variant LOW 165G>A Ser55Ser
M0067306 IBCKLHEI_00002 2208 6 Skin 0.21 protein_coding synonymous_variant LOW 150G>A Pro50Pro
M0067307 IBCKLHEI_00002 2229 11 Skin 0.38 protein_coding synonymous_variant LOW 129T>G Ala43Ala
M0067308 IBCKLHEI_00002 2231 13 Skin 0.45 protein_coding missense_variant MODERATE 127G>A Ala43Thr
M0067309 IBCKLHEI_00002 2341 3 Skin 0.10 protein_coding missense_variant MODERATE 17T>C Ile6Thr
M0067310 IBCKLHEI_00004 593 8 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -3676T>G None
M0067311 IBCKLHEI_00004 672 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3597T>C None
M0067312 IBCKLHEI_00001 934 8 Skin 0.28 protein_coding synonymous_variant LOW 432G>A Thr144Thr
M0067313 IBCKLHEI_00001 1197 3 Skin 0.10 protein_coding missense_variant MODERATE 169T>G Ser57Ala
M0067314 IBCKLHEI_00002 1604 5 Skin 0.17 protein_coding missense_variant MODERATE 754C>T Pro252Ser
M0067315 IBCKLHEI_00004 4826 3 Skin 0.10 protein_coding synonymous_variant LOW 558T>C Thr186Thr
M0067316 IBCKLHEI_00004 4865 4 Skin 0.14 protein_coding synonymous_variant LOW 597A>G Ala199Ala
M0067317 IBCKLHEI_00004 4884 5 Skin 0.17 protein_coding missense_variant MODERATE 616G>A Val206Ile
M0067318 IBCKLHEI_00004 4901 4 Skin 0.14 protein_coding synonymous_variant LOW 633C>T Ala211Ala
M0067319 IBCKLHEI_00004 4906 4 Skin 0.14 protein_coding missense_variant MODERATE 638A>G Gln213Arg
M0067320 IBCKLHEI_00004 4910 4 Skin 0.14 protein_coding synonymous_variant LOW 642G>C Pro214Pro
M0067321 IBCKLHEI_00005 4940 3 Skin 0.10 protein_coding missense_variant MODERATE 491G>A Arg164His
M0067322 IBCKLHEI_00004 4951 5 Skin 0.17 protein_coding missense_variant MODERATE 683A>T His228Leu
M0067323 IBCKLHEI_00005 4970 3 Skin 0.10 protein_coding missense_variant MODERATE 461G>A Gly154Glu
M0067324 IBCKLHEI_00005 4991 4 Skin 0.14 protein_coding missense_variant MODERATE 440A>G Lys147Arg
M0067325 IBCKLHEI_00005 4992 4 Skin 0.14 protein_coding missense_variant MODERATE 439A>G Lys147Glu
M0067326 IBCKLHEI_00005 4997 3 Skin 0.10 protein_coding missense_variant MODERATE 434G>A Arg145His
M0067327 IBCKLHEI_00004 490 5 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3779G>C None
M0067328 IBCKLHEI_00004 523 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3746C>T None
M0067329 IBCKLHEI_00003 2641 4 Skin 0.14 protein_coding synonymous_variant LOW 1365C>T Gly455Gly
M0067330 IBCKLHEI_00003 3541 3 Skin 0.10 protein_coding synonymous_variant LOW 465T>C Ser155Ser
M0067331 IBCKLHEI_00003 3732 9 Skin 0.31 protein_coding missense_variant MODERATE 274A>G Asn92Asp
M0067332 IBCKLHEI_00003 3738 5 Skin 0.17 protein_coding missense_variant MODERATE 268A>G Asn90Asp
M0067333 IBCKLHEI_00003 3778 5 Skin 0.17 protein_coding synonymous_variant LOW 228A>C Ile76Ile
M0067334 IBCKLHEI_00003 3796 5 Skin 0.17 protein_coding synonymous_variant LOW 210T>G Ala70Ala
M0067335 IBCKLHEI_00003 3826 5 Skin 0.17 protein_coding synonymous_variant LOW 180T>C Ala60Ala
M0067336 IBCKLHEI_00003 3838 5 Skin 0.17 protein_coding synonymous_variant LOW 168C>A Gly56Gly
M0067337 IBCKLHEI_00002 2161 5 Skin 0.17 protein_coding missense_variant MODERATE 197C>T Pro66Leu
M0067338 IBCKLHEI_00002 2170 9 Skin 0.31 protein_coding missense_variant MODERATE 188G>A Arg63Lys
M0067339 IBCKLHEI_00003 3319 8 Skin 0.28 protein_coding synonymous_variant LOW 687G>A Gly229Gly
M0067340 IBCKLHEI_00003 3658 3 Skin 0.10 protein_coding synonymous_variant LOW 348G>A Lys116Lys
M0067341 IBCKLHEI_00003 3903 3 Skin 0.10 protein_coding missense_variant MODERATE 103T>G Ser35Ala
M0067342 IBCKLHEI_00003 3904 3 Skin 0.10 protein_coding synonymous_variant LOW 102T>C Leu34Leu
M0067343 IBCKLHEI_00003 3955 6 Skin 0.21 protein_coding synonymous_variant LOW 51T>C Val17Val
M0067344 IBCKLHEI_00002 1704 3 Skin 0.10 protein_coding synonymous_variant LOW 654G>A Lys218Lys
M0067345 IBCKLHEI_00002 2055 5 Skin 0.17 protein_coding synonymous_variant LOW 303C>T Asp101Asp
M0067346 IBCKLHEI_00003 2857 3 Skin 0.10 protein_coding synonymous_variant LOW 1149G>A Pro383Pro
M0067347 IBCKLHEI_00003 3022 3 Skin 0.10 protein_coding synonymous_variant LOW 984A>G Glu328Glu
M0067348 IBCKLHEI_00002 2277 5 Skin 0.17 protein_coding synonymous_variant LOW 81G>A Glu27Glu
M0067349 IBCKLHEI_00002 2326 5 Skin 0.17 protein_coding missense_variant MODERATE 32C>T Ala11Val
M0067350 IBCKLHEI_00002 1391 6 Skin 0.21 protein_coding missense_variant MODERATE 967G>A Ala323Thr
M0067351 IBCKLHEI_00002 2254 4 Skin 0.14 protein_coding missense_variant MODERATE 104A>C Gln35Pro
M0067352 IBCKLHEI_00003 3307 3 Skin 0.10 protein_coding synonymous_variant LOW 699A>G Ala233Ala
M0067353 IBCKLHEI_00003 3328 5 Skin 0.17 protein_coding synonymous_variant LOW 678T>C Asp226Asp
M0067354 IBCKLHEI_00001 4131 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2766A>G None
M0067355 IBCKLHEI_00004 4294 3 Skin 0.10 protein_coding missense_variant MODERATE 26A>G Lys9Arg
M0067356 IBCKLHEI_00004 4517 4 Skin 0.14 protein_coding synonymous_variant LOW 249T>C Arg83Arg
M0067357 IBCKLHEI_00004 4781 3 Skin 0.10 protein_coding synonymous_variant LOW 513G>A Gly171Gly
M0067358 IBCKLHEI_00004 4808 4 Skin 0.14 protein_coding synonymous_variant LOW 540A>G Arg180Arg
M0067359 IBCKLHEI_00004 4847 3 Skin 0.10 protein_coding synonymous_variant LOW 579C>T Gly193Gly
M0067360 IBCKLHEI_00003 3530 3 Skin 0.10 protein_coding missense_variant MODERATE 476T>C Met159Thr
M0067361 IBCKLHEI_00001 4166 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2801C>T None
M0067362 IBCKLHEI_00001 4179 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2814G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term