Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2929
  Reference Plasmid   DP1808006827_bin.1__NODE_1034_length_3758_cov_0.890681
  Reference Plasmid Size   3758
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067363 IGKHDMPJ_00001 216 3 Skin 0.60 protein_coding synonymous_variant LOW 255T>C Pro85Pro
M0067364 IGKHDMPJ_00002 1180 3 Skin 0.60 protein_coding synonymous_variant LOW 462C>A Arg154Arg
M0067365 IGKHDMPJ_00002 1181 3 Skin 0.60 protein_coding missense_variant MODERATE 461G>A Arg154His
M0067366 IGKHDMPJ_00002 1182 3 Skin 0.60 protein_coding missense_variant MODERATE 460C>A Arg154Ser
M0067367 IGKHDMPJ_00002 1183 3 Skin 0.60 protein_coding synonymous_variant LOW 459G>C Gly153Gly
M0067368 IGKHDMPJ_00002 1186 3 Skin 0.60 protein_coding synonymous_variant LOW 456C>G Gly152Gly
M0067369 IGKHDMPJ_00002 1330 3 Skin 0.60 protein_coding synonymous_variant LOW 312C>G Ala104Ala
M0067370 IGKHDMPJ_00002 1342 3 Skin 0.60 protein_coding synonymous_variant LOW 300C>G Pro100Pro
M0067371 IGKHDMPJ_00002 1369 3 Skin 0.60 protein_coding synonymous_variant LOW 273C>T Thr91Thr
M0067372 IGKHDMPJ_00002 1395 3 Skin 0.60 protein_coding synonymous_variant LOW 247T>C Leu83Leu
M0067373 IGKHDMPJ_00002 1401 3 Skin 0.60 protein_coding missense_variant MODERATE 241G>A Gly81Ser
M0067374 IGKHDMPJ_00002 1405 3 Skin 0.60 protein_coding synonymous_variant LOW 237A>G Glu79Glu
M0067375 IGKHDMPJ_00001 1778 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1308G>A None
M0067376 IGKHDMPJ_00003 1866 4 Skin 0.80 protein_coding synonymous_variant LOW 66G>A Gln22Gln
M0067377 IGKHDMPJ_00004 2837 3 Skin 0.60 protein_coding synonymous_variant LOW 453T>C Arg151Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term