Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2931
  Reference Plasmid   DP1808006828_bin.6__NODE_255_length_6339_cov_0.425160
  Reference Plasmid Size   6339
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067384 AKBONPKP_00003 1554 4 Skin 0.36 protein_coding synonymous_variant LOW 1393C>T Leu465Leu
M0067385 AKBONPKP_00003 1966 4 Skin 0.36 protein_coding synonymous_variant LOW 981C>G Arg327Arg
M0067386 AKBONPKP_00003 1971 4 Skin 0.36 protein_coding missense_variant MODERATE 976G>C Val326Leu
M0067387 AKBONPKP_00003 1973 4 Skin 0.36 protein_coding missense_variant MODERATE 974T>C Val325Ala
M0067388 AKBONPKP_00003 2928 6 Skin 0.55 protein_coding synonymous_variant LOW 19T>C Leu7Leu
M0067389 AKBONPKP_00004 4304 5 Skin 0.45 protein_coding synonymous_variant LOW 1239C>T Ala413Ala
M0067390 AKBONPKP_00002 1065 5 Skin 0.45 protein_coding missense_variant MODERATE 202C>A His68Asn
M0067391 AKBONPKP_00003 2485 3 Skin 0.27 protein_coding synonymous_variant LOW 462G>C Gly154Gly
M0067392 AKBONPKP_00003 2488 3 Skin 0.27 protein_coding synonymous_variant LOW 459A>G Pro153Pro
M0067393 AKBONPKP_00003 2593 3 Skin 0.27 protein_coding synonymous_variant LOW 354A>G Gly118Gly
M0067394 AKBONPKP_00003 2635 3 Skin 0.27 protein_coding synonymous_variant LOW 312C>T Asn104Asn
M0067395 AKBONPKP_00005 4950 4 Skin 0.36 protein_coding missense_variant MODERATE 436A>G Ile146Val
M0067396 AKBONPKP_00005 5016 4 Skin 0.36 protein_coding missense_variant MODERATE 502A>G Ile168Val
M0067397 AKBONPKP_00005 5030 4 Skin 0.36 protein_coding synonymous_variant LOW 516C>T Ser172Ser
M0067398 AKBONPKP_00006 5230 4 Skin 0.36 protein_coding synonymous_variant LOW 96T>C Phe32Phe
M0067399 AKBONPKP_00006 5233 4 Skin 0.36 protein_coding synonymous_variant LOW 99A>G Gly33Gly
M0067400 AKBONPKP_00004 4341 3 Skin 0.27 protein_coding missense_variant MODERATE 1276G>A Glu426Lys
M0067401 AKBONPKP_00004 4373 3 Skin 0.27 protein_coding synonymous_variant LOW 1308T>C Gly436Gly
M0067402 AKBONPKP_00006 5305 3 Skin 0.27 protein_coding synonymous_variant LOW 171C>G Leu57Leu
M0067403 AKBONPKP_00006 5306 3 Skin 0.27 protein_coding missense_variant MODERATE 172A>G Thr58Ala
M0067404 AKBONPKP_00006 5308 3 Skin 0.27 protein_coding synonymous_variant LOW 174C>G Thr58Thr
M0067405 AKBONPKP_00006 5311 3 Skin 0.27 protein_coding synonymous_variant LOW 177T>G Leu59Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term