Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2934
  Reference Plasmid   DP1808006829_bin.4__NODE_380_length_5697_cov_0.444980
  Reference Plasmid Size   5697
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067477 PPBBELIO_00001 292 3 Skin 0.60 protein_coding synonymous_variant LOW 216T>C Tyr72Tyr
M0067478 PPBBELIO_00001 295 3 Skin 0.60 protein_coding synonymous_variant LOW 213G>T Ala71Ala
M0067479 PPBBELIO_00001 298 3 Skin 0.60 protein_coding missense_variant MODERATE 210A>C Glu70Asp
M0067480 PPBBELIO_00001 301 3 Skin 0.60 protein_coding synonymous_variant LOW 207C>A Pro69Pro
M0067481 PPBBELIO_00001 303 3 Skin 0.60 protein_coding missense_variant MODERATE 205C>G Pro69Ala
M0067482 PPBBELIO_00001 304 3 Skin 0.60 protein_coding synonymous_variant LOW 204T>C Ser68Ser
M0067483 PPBBELIO_00001 305 3 Skin 0.60 protein_coding missense_variant MODERATE 203G>A Ser68Asn
M0067484 PPBBELIO_00001 306 3 Skin 0.60 protein_coding missense_variant MODERATE 202A>G Ser68Gly
M0067485 PPBBELIO_00001 312 3 Skin 0.60 protein_coding synonymous_variant LOW 196C>T Leu66Leu
M0067486 PPBBELIO_00001 313 3 Skin 0.60 protein_coding synonymous_variant LOW 195A>G Val65Val
M0067487 PPBBELIO_00003 1046 4 Skin 0.80 protein_coding synonymous_variant LOW 99C>G Val33Val
M0067488 PPBBELIO_00003 1052 4 Skin 0.80 protein_coding synonymous_variant LOW 93G>A Lys31Lys
M0067489 PPBBELIO_00004 2373 3 Skin 0.60 protein_coding synonymous_variant LOW 426C>T Phe142Phe
M0067490 PPBBELIO_00004 2717 4 Skin 0.80 protein_coding missense_variant MODERATE 82G>A Ala28Thr
M0067491 PPBBELIO_00001 2847 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2340C>T None
M0067492 PPBBELIO_00005 3215 3 Skin 0.60 protein_coding synonymous_variant LOW 78C>T Ser26Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term