Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2935
  Reference Plasmid   DP1808006831_bin.3__NODE_1081_length_3303_cov_0.342072
  Reference Plasmid Size   3303
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067493 OHBGOGJI_00004 2125 7 Skin 0.64 protein_coding missense_variant MODERATE 179C>T Pro60Leu
M0067494 OHBGOGJI_00005 2355 9 Skin 0.82 protein_coding missense_variant MODERATE 68G>T Cys23Phe
M0067495 OHBGOGJI_00005 2386 3 Skin 0.27 protein_coding synonymous_variant LOW 99G>A Val33Val
M0067496 OHBGOGJI_00005 2398 8 Skin 0.73 protein_coding synonymous_variant LOW 111T>C Ser37Ser
M0067497 OHBGOGJI_00005 2402 5 Skin 0.45 protein_coding missense_variant MODERATE 115A>C Met39Leu
M0067498 OHBGOGJI_00005 2413 6 Skin 0.55 protein_coding synonymous_variant LOW 126C>G Leu42Leu
M0067499 OHBGOGJI_00005 2452 3 Skin 0.27 protein_coding synonymous_variant LOW 165C>G Gly55Gly
M0067500 OHBGOGJI_00005 2559 6 Skin 0.55 protein_coding missense_variant MODERATE 272T>C Ile91Thr
M0067501 OHBGOGJI_00001 3144 4 Skin 0.36 protein_coding downstream_gene_variant MODIFIER *2527C>G None
M0067502 OHBGOGJI_00001 127 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -14A>T None
M0067503 OHBGOGJI_00001 404 4 Skin 0.36 protein_coding synonymous_variant LOW 264A>T Ala88Ala
M0067504 OHBGOGJI_00001 449 4 Skin 0.36 protein_coding synonymous_variant LOW 309T>C Ile103Ile
M0067505 OHBGOGJI_00001 508 4 Skin 0.36 protein_coding missense_variant MODERATE 368C>G Ala123Gly
M0067506 OHBGOGJI_00002 784 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -10T>G None
M0067507 OHBGOGJI_00002 1022 3 Skin 0.27 protein_coding missense_variant MODERATE 229G>A Ala77Thr
M0067508 OHBGOGJI_00002 1024 4 Skin 0.36 protein_coding synonymous_variant LOW 231T>C Ala77Ala
M0067509 OHBGOGJI_00002 1067 3 Skin 0.27 protein_coding missense_variant MODERATE 274A>G Met92Val
M0067510 OHBGOGJI_00003 1542 9 Skin 0.82 protein_coding upstream_gene_variant MODIFIER -88C>T None
M0067511 OHBGOGJI_00003 1690 5 Skin 0.45 protein_coding missense_variant MODERATE 61C>G Gln21Glu
M0067512 OHBGOGJI_00005 2407 3 Skin 0.27 protein_coding synonymous_variant LOW 120C>T Pro40Pro
M0067513 OHBGOGJI_00005 2408 3 Skin 0.27 protein_coding missense_variant MODERATE 121A>G Thr41Ala
M0067514 OHBGOGJI_00005 2409 3 Skin 0.27 protein_coding missense_variant MODERATE 122C>G Thr41Ser
M0067515 OHBGOGJI_00005 2653 4 Skin 0.36 protein_coding synonymous_variant LOW 366C>T Asn122Asn
M0067516 OHBGOGJI_00005 2658 4 Skin 0.36 protein_coding missense_variant MODERATE 371A>G Gln124Arg
M0067517 OHBGOGJI_00005 2942 4 Skin 0.36 protein_coding missense_variant MODERATE 655A>G Ser219Gly
M0067518 OHBGOGJI_00005 2563 4 Skin 0.36 protein_coding synonymous_variant LOW 276G>C Leu92Leu
M0067519 OHBGOGJI_00005 2566 4 Skin 0.36 protein_coding synonymous_variant LOW 279G>C Pro93Pro
M0067520 OHBGOGJI_00005 2770 3 Skin 0.27 protein_coding synonymous_variant LOW 483G>A Val161Val
M0067521 OHBGOGJI_00005 2771 3 Skin 0.27 protein_coding missense_variant MODERATE 484A>T Met162Leu
M0067522 OHBGOGJI_00003 1588 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -42T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OHBGOGJI_00002 ASN80343.1|CBM50 73.1 2e-119 1 248 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term