Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2936
  Reference Plasmid   DP1808006842_bin.6__NODE_374_length_5582_cov_1.391209
  Reference Plasmid Size   5582
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067523 MPOBBLFN_00002 1671 9 Skin 0.38 protein_coding synonymous_variant LOW 246T>C Phe82Phe
M0067524 MPOBBLFN_00002 1680 8 Skin 0.33 protein_coding synonymous_variant LOW 255G>C Val85Val
M0067525 MPOBBLFN_00002 1689 8 Skin 0.33 protein_coding synonymous_variant LOW 264C>T Val88Val
M0067526 MPOBBLFN_00003 2183 15 Skin 0.63 protein_coding synonymous_variant LOW 321A>G Thr107Thr
M0067527 MPOBBLFN_00003 2281 3 Skin 0.13 protein_coding missense_variant MODERATE 419G>A Gly140Glu
M0067528 MPOBBLFN_00004 2761 4 Skin 0.17 protein_coding synonymous_variant LOW 81G>A Gln27Gln
M0067529 MPOBBLFN_00004 2764 4 Skin 0.17 protein_coding synonymous_variant LOW 84G>A Pro28Pro
M0067530 MPOBBLFN_00004 2769 7 Skin 0.29 protein_coding missense_variant MODERATE 89T>C Val30Ala
M0067531 MPOBBLFN_00004 2836 13 Skin 0.54 protein_coding synonymous_variant LOW 156A>G Gln52Gln
M0067532 MPOBBLFN_00004 2839 13 Skin 0.54 protein_coding synonymous_variant LOW 159T>C Pro53Pro
M0067533 MPOBBLFN_00004 2887 6 Skin 0.25 protein_coding synonymous_variant LOW 207T>C Thr69Thr
M0067534 MPOBBLFN_00006 4125 5 Skin 0.21 protein_coding synonymous_variant LOW 582T>C Ser194Ser
M0067535 MPOBBLFN_00006 4144 3 Skin 0.13 protein_coding synonymous_variant LOW 601T>C Leu201Leu
M0067536 MPOBBLFN_00006 4251 4 Skin 0.17 protein_coding synonymous_variant LOW 708T>C Gly236Gly
M0067537 MPOBBLFN_00006 4278 5 Skin 0.21 protein_coding synonymous_variant LOW 735T>G Ala245Ala
M0067538 MPOBBLFN_00006 4290 5 Skin 0.21 protein_coding synonymous_variant LOW 747C>T Ala249Ala
M0067539 MPOBBLFN_00006 4298 5 Skin 0.21 protein_coding missense_variant MODERATE 755G>A Gly252Glu
M0067540 MPOBBLFN_00006 4302 5 Skin 0.21 protein_coding synonymous_variant LOW 759C>T Arg253Arg
M0067541 MPOBBLFN_00006 4307 5 Skin 0.21 protein_coding missense_variant MODERATE 764G>A Arg255Gln
M0067542 MPOBBLFN_00006 4330 5 Skin 0.21 protein_coding missense_variant MODERATE 787G>A Ala263Thr
M0067543 MPOBBLFN_00006 4344 6 Skin 0.25 protein_coding synonymous_variant LOW 801G>A Thr267Thr
M0067544 MPOBBLFN_00006 4345 6 Skin 0.25 protein_coding synonymous_variant LOW 802T>C Leu268Leu
M0067545 MPOBBLFN_00006 4374 6 Skin 0.25 protein_coding synonymous_variant LOW 831G>C Pro277Pro
M0067546 MPOBBLFN_00006 4380 6 Skin 0.25 protein_coding synonymous_variant LOW 837C>T Asn279Asn
M0067547 MPOBBLFN_00006 4485 7 Skin 0.29 protein_coding synonymous_variant LOW 942G>A Leu314Leu
M0067548 MPOBBLFN_00006 4983 7 Skin 0.29 protein_coding synonymous_variant LOW 1440A>G Gln480Gln
M0067549 MPOBBLFN_00006 4995 7 Skin 0.29 protein_coding synonymous_variant LOW 1452T>C Pro484Pro
M0067550 MPOBBLFN_00006 5001 6 Skin 0.25 protein_coding synonymous_variant LOW 1458C>T Arg486Arg
M0067551 MPOBBLFN_00006 5058 7 Skin 0.29 protein_coding synonymous_variant LOW 1515T>C Ala505Ala
M0067552 MPOBBLFN_00006 5076 7 Skin 0.29 protein_coding missense_variant MODERATE 1533A>C Lys511Asn
M0067553 MPOBBLFN_00006 5124 5 Skin 0.21 protein_coding synonymous_variant LOW 1581T>G Leu527Leu
M0067554 MPOBBLFN_00006 5163 6 Skin 0.25 protein_coding synonymous_variant LOW 1620C>G Ala540Ala
M0067555 MPOBBLFN_00004 2954 11 Skin 0.46 protein_coding missense_variant MODERATE 274G>C Val92Leu
M0067556 MPOBBLFN_00004 2974 11 Skin 0.46 protein_coding synonymous_variant LOW 294G>A Gln98Gln
M0067557 MPOBBLFN_00004 2975 7 Skin 0.29 protein_coding missense_variant MODERATE 295C>A Pro99Thr
M0067558 MPOBBLFN_00004 2980 7 Skin 0.29 protein_coding synonymous_variant LOW 300C>T Asp100Asp
M0067559 MPOBBLFN_00004 2998 11 Skin 0.46 protein_coding synonymous_variant LOW 318T>C Cys106Cys
M0067560 MPOBBLFN_00006 3636 5 Skin 0.21 protein_coding synonymous_variant LOW 93G>A Lys31Lys
M0067561 MPOBBLFN_00006 3639 5 Skin 0.21 protein_coding synonymous_variant LOW 96T>C Leu32Leu
M0067562 MPOBBLFN_00006 3648 5 Skin 0.21 protein_coding missense_variant MODERATE 105C>A Asp35Glu
M0067563 MPOBBLFN_00006 3651 5 Skin 0.21 protein_coding synonymous_variant LOW 108A>C Gly36Gly
M0067564 MPOBBLFN_00006 3915 7 Skin 0.29 protein_coding synonymous_variant LOW 372C>G Thr124Thr
M0067565 MPOBBLFN_00006 3934 8 Skin 0.33 protein_coding missense_variant MODERATE 391G>A Ala131Thr
M0067566 MPOBBLFN_00006 3942 9 Skin 0.38 protein_coding synonymous_variant LOW 399C>G Leu133Leu
M0067567 MPOBBLFN_00006 3945 9 Skin 0.38 protein_coding synonymous_variant LOW 402A>G Glu134Glu
M0067568 MPOBBLFN_00006 4177 3 Skin 0.13 protein_coding synonymous_variant LOW 634C>T Leu212Leu
M0067569 MPOBBLFN_00001 463 5 Skin 0.21 protein_coding synonymous_variant LOW 384G>A Leu128Leu
M0067570 MPOBBLFN_00002 1774 12 Skin 0.50 protein_coding missense_variant MODERATE 349C>G Gln117Glu
M0067571 MPOBBLFN_00002 1776 12 Skin 0.50 protein_coding synonymous_variant LOW 351G>A Gln117Gln
M0067572 MPOBBLFN_00004 2970 4 Skin 0.17 protein_coding missense_variant MODERATE 290G>A Gly97Glu
M0067573 MPOBBLFN_00005 3049 10 Skin 0.42 protein_coding missense_variant MODERATE 25A>G Thr9Ala
M0067574 MPOBBLFN_00005 3090 10 Skin 0.42 protein_coding synonymous_variant LOW 66G>A Thr22Thr
M0067575 MPOBBLFN_00005 3096 10 Skin 0.42 protein_coding synonymous_variant LOW 72C>G Val24Val
M0067576 MPOBBLFN_00005 3300 9 Skin 0.38 protein_coding synonymous_variant LOW 276C>T Ala92Ala
M0067577 MPOBBLFN_00005 3306 9 Skin 0.38 protein_coding synonymous_variant LOW 282C>T Arg94Arg
M0067578 MPOBBLFN_00004 2737 3 Skin 0.13 protein_coding synonymous_variant LOW 57G>C Leu19Leu
M0067579 MPOBBLFN_00004 2758 3 Skin 0.13 protein_coding synonymous_variant LOW 78C>T Ala26Ala
M0067580 MPOBBLFN_00004 2759 3 Skin 0.13 protein_coding missense_variant MODERATE 79C>A Gln27Lys
M0067581 MPOBBLFN_00004 2760 3 Skin 0.13 protein_coding missense_variant MODERATE 80A>G Gln27Arg
M0067582 MPOBBLFN_00004 2785 3 Skin 0.13 protein_coding synonymous_variant LOW 105G>A Gln35Gln
M0067583 MPOBBLFN_00006 3618 3 Skin 0.13 protein_coding synonymous_variant LOW 75C>G Ser25Ser
M0067584 MPOBBLFN_00006 3684 3 Skin 0.13 protein_coding synonymous_variant LOW 141C>G Ala47Ala
M0067585 MPOBBLFN_00006 3690 3 Skin 0.13 protein_coding synonymous_variant LOW 147C>T Asn49Asn
M0067586 MPOBBLFN_00006 3711 3 Skin 0.13 protein_coding synonymous_variant LOW 168A>G Gln56Gln
M0067587 MPOBBLFN_00006 3714 3 Skin 0.13 protein_coding synonymous_variant LOW 171C>G Arg57Arg
M0067588 MPOBBLFN_00006 3717 3 Skin 0.13 protein_coding synonymous_variant LOW 174C>T Ile58Ile
M0067589 MPOBBLFN_00006 3723 3 Skin 0.13 protein_coding synonymous_variant LOW 180C>T Asn60Asn
M0067590 MPOBBLFN_00006 3729 3 Skin 0.13 protein_coding synonymous_variant LOW 186T>C Ile62Ile
M0067591 MPOBBLFN_00006 3793 3 Skin 0.13 protein_coding missense_variant MODERATE 250C>G Gln84Glu
M0067592 MPOBBLFN_00006 3794 3 Skin 0.13 protein_coding missense_variant MODERATE 251A>G Gln84Arg
M0067593 MPOBBLFN_00006 3801 3 Skin 0.13 protein_coding synonymous_variant LOW 258C>T Arg86Arg
M0067594 MPOBBLFN_00006 3804 3 Skin 0.13 protein_coding synonymous_variant LOW 261A>G Glu87Glu
M0067595 MPOBBLFN_00006 3981 7 Skin 0.29 protein_coding synonymous_variant LOW 438G>A Thr146Thr
M0067596 MPOBBLFN_00006 3984 7 Skin 0.29 protein_coding synonymous_variant LOW 441C>T Gly147Gly
M0067597 MPOBBLFN_00006 4041 6 Skin 0.25 protein_coding synonymous_variant LOW 498C>T Asn166Asn
M0067598 MPOBBLFN_00006 4056 6 Skin 0.25 protein_coding synonymous_variant LOW 513C>T Ser171Ser
M0067599 MPOBBLFN_00006 4077 6 Skin 0.25 protein_coding synonymous_variant LOW 534G>A Gly178Gly
M0067600 MPOBBLFN_00006 4669 4 Skin 0.17 protein_coding synonymous_variant LOW 1126C>T Leu376Leu
M0067601 MPOBBLFN_00006 4677 4 Skin 0.17 protein_coding synonymous_variant LOW 1134C>G Val378Val
M0067602 MPOBBLFN_00006 4692 5 Skin 0.21 protein_coding synonymous_variant LOW 1149C>G Pro383Pro
M0067603 MPOBBLFN_00006 4696 5 Skin 0.21 protein_coding missense_variant MODERATE 1153G>A Ala385Thr
M0067604 MPOBBLFN_00006 4704 4 Skin 0.17 protein_coding synonymous_variant LOW 1161A>C Thr387Thr
M0067605 MPOBBLFN_00006 4707 4 Skin 0.17 protein_coding synonymous_variant LOW 1164A>G Glu388Glu
M0067606 MPOBBLFN_00006 5085 5 Skin 0.21 protein_coding synonymous_variant LOW 1542G>C Gly514Gly
M0067607 MPOBBLFN_00006 4503 3 Skin 0.13 protein_coding synonymous_variant LOW 960G>A Gln320Gln
M0067608 MPOBBLFN_00002 1707 7 Skin 0.29 protein_coding synonymous_variant LOW 282G>A Gln94Gln
M0067609 MPOBBLFN_00006 4197 3 Skin 0.13 protein_coding synonymous_variant LOW 654C>G Thr218Thr
M0067610 MPOBBLFN_00006 4245 3 Skin 0.13 protein_coding synonymous_variant LOW 702G>C Val234Val
M0067611 MPOBBLFN_00006 4254 3 Skin 0.13 protein_coding synonymous_variant LOW 711G>A Val237Val
M0067612 MPOBBLFN_00006 4845 7 Skin 0.29 protein_coding synonymous_variant LOW 1302G>A Glu434Glu
M0067613 MPOBBLFN_00006 5059 3 Skin 0.13 protein_coding synonymous_variant LOW 1516C>T Leu506Leu
M0067614 MPOBBLFN_00005 3105 3 Skin 0.13 protein_coding synonymous_variant LOW 81T>C Thr27Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
MPOBBLFN_00001 Arsenic (As), Antimony (Sb) 70.4 8.2e-170 1 433 0.9954 1.0093 experiment
MPOBBLFN_00001 Arsenic (As), Antimony (Sb) 71.4 3.4e-169 1 433 0.9954 1.0093 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term