Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2937
  Reference Plasmid   DP1808006875_bin.3__NODE_1018_length_4225_cov_0.709161
  Reference Plasmid Size   4225
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067615 HJKAMNGN_00001 740 3 Skin 0.75 protein_coding synonymous_variant LOW 733T>C Leu245Leu
M0067616 HJKAMNGN_00001 749 3 Skin 0.75 protein_coding missense_variant MODERATE 742T>C Cys248Arg
M0067617 HJKAMNGN_00001 803 3 Skin 0.75 protein_coding missense_variant MODERATE 796C>G Arg266Gly
M0067618 HJKAMNGN_00001 812 3 Skin 0.75 protein_coding missense_variant MODERATE 805C>G Pro269Ala
M0067619 HJKAMNGN_00001 857 3 Skin 0.75 protein_coding missense_variant MODERATE 850C>T Leu284Phe
M0067620 HJKAMNGN_00001 1108 3 Skin 0.75 protein_coding synonymous_variant LOW 1101A>G Gln367Gln
M0067621 HJKAMNGN_00001 1109 3 Skin 0.75 protein_coding missense_variant MODERATE 1102A>G Ile368Val
M0067622 HJKAMNGN_00001 1112 3 Skin 0.75 protein_coding missense_variant MODERATE 1105T>G Ser369Ala
M0067623 HJKAMNGN_00002 1507 4 Skin 1.00 protein_coding upstream_gene_variant MODIFIER -29G>A None
M0067624 HJKAMNGN_00002 1550 4 Skin 1.00 protein_coding synonymous_variant LOW 15C>T Ile5Ile
M0067625 HJKAMNGN_00004 2346 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -576T>G None
M0067626 HJKAMNGN_00004 3011 3 Skin 0.75 protein_coding synonymous_variant LOW 90C>T Ile30Ile
M0067627 HJKAMNGN_00004 3014 3 Skin 0.75 protein_coding synonymous_variant LOW 93C>T Phe31Phe
M0067628 HJKAMNGN_00004 3377 3 Skin 0.75 protein_coding synonymous_variant LOW 456G>A Glu152Glu
M0067629 HJKAMNGN_00004 3565 3 Skin 0.75 protein_coding missense_variant MODERATE 644C>T Thr215Met
M0067630 HJKAMNGN_00004 3576 3 Skin 0.75 protein_coding missense_variant MODERATE 655C>A Gln219Lys
M0067631 HJKAMNGN_00004 3584 3 Skin 0.75 protein_coding synonymous_variant LOW 663A>G Gly221Gly
M0067632 HJKAMNGN_00004 3686 4 Skin 1.00 protein_coding synonymous_variant LOW 765C>T Phe255Phe
M0067633 HJKAMNGN_00004 3689 4 Skin 1.00 protein_coding synonymous_variant LOW 768T>C Tyr256Tyr
M0067634 HJKAMNGN_00004 3722 3 Skin 0.75 protein_coding synonymous_variant LOW 801G>A Gln267Gln
M0067635 HJKAMNGN_00004 3773 3 Skin 0.75 protein_coding synonymous_variant LOW 852A>G Ala284Ala
M0067636 HJKAMNGN_00004 3776 3 Skin 0.75 protein_coding synonymous_variant LOW 855C>G Leu285Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term