Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2938
  Reference Plasmid   DP1808006875_bin.3__NODE_1775_length_3251_cov_0.604061
  Reference Plasmid Size   3251
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067637 IHEMONAJ_00001 201 3 Skin 0.60 protein_coding synonymous_variant LOW 144C>T Phe48Phe
M0067638 IHEMONAJ_00001 795 3 Skin 0.60 protein_coding synonymous_variant LOW 738C>G Val246Val
M0067639 IHEMONAJ_00001 888 4 Skin 0.80 protein_coding synonymous_variant LOW 831T>C Arg277Arg
M0067640 IHEMONAJ_00001 1005 4 Skin 0.80 protein_coding synonymous_variant LOW 948C>T Gly316Gly
M0067641 IHEMONAJ_00001 1008 4 Skin 0.80 protein_coding synonymous_variant LOW 951T>C Phe317Phe
M0067642 IHEMONAJ_00001 1014 4 Skin 0.80 protein_coding synonymous_variant LOW 957G>A Thr319Thr
M0067643 IHEMONAJ_00001 1015 4 Skin 0.80 protein_coding synonymous_variant LOW 958T>C Leu320Leu
M0067644 IHEMONAJ_00001 1059 5 Skin 1.00 protein_coding synonymous_variant LOW 1002T>C Ala334Ala
M0067645 IHEMONAJ_00002 1164 3 Skin 0.60 protein_coding synonymous_variant LOW 18A>T Ser6Ser
M0067646 IHEMONAJ_00002 1174 3 Skin 0.60 protein_coding missense_variant MODERATE 28T>C Ser10Pro
M0067647 IHEMONAJ_00002 1177 3 Skin 0.60 protein_coding missense_variant MODERATE 31C>G Pro11Ala
M0067648 IHEMONAJ_00002 1183 3 Skin 0.60 protein_coding missense_variant MODERATE 37A>C Thr13Pro
M0067649 IHEMONAJ_00002 1184 3 Skin 0.60 protein_coding missense_variant MODERATE 38C>T Thr13Ile
M0067650 IHEMONAJ_00002 1192 3 Skin 0.60 protein_coding missense_variant MODERATE 46C>T Leu16Phe
M0067651 IHEMONAJ_00002 1193 3 Skin 0.60 protein_coding missense_variant MODERATE 47T>G Leu16Arg
M0067652 IHEMONAJ_00002 1590 3 Skin 0.60 protein_coding synonymous_variant LOW 444C>T His148His
M0067653 IHEMONAJ_00002 1614 3 Skin 0.60 protein_coding synonymous_variant LOW 468A>G Gln156Gln
M0067654 IHEMONAJ_00002 1962 3 Skin 0.60 protein_coding synonymous_variant LOW 816A>G Val272Val
M0067655 IHEMONAJ_00002 2112 3 Skin 0.60 protein_coding synonymous_variant LOW 966A>G Gln322Gln
M0067656 IHEMONAJ_00003 3174 4 Skin 0.80 protein_coding missense_variant MODERATE 25G>A Ala9Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term