Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2946
  Reference Plasmid   DS1912041100-1_bin.11__k141_104639
  Reference Plasmid Size   20121
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0067672 HOHHHDLP_00016 15060 3 Skin 0.12 protein_coding synonymous_variant LOW 96A>C Pro32Pro
M0067673 HOHHHDLP_00016 15087 5 Skin 0.20 protein_coding synonymous_variant LOW 123A>G Gln41Gln
M0067674 HOHHHDLP_00016 15090 5 Skin 0.20 protein_coding synonymous_variant LOW 126A>G Ala42Ala
M0067675 HOHHHDLP_00016 15468 3 Skin 0.12 protein_coding synonymous_variant LOW 504C>T Asp168Asp
M0067676 HOHHHDLP_00016 15469 3 Skin 0.12 protein_coding missense_variant MODERATE 505A>G Thr169Ala
M0067677 HOHHHDLP_00016 15568 3 Skin 0.12 protein_coding missense_variant MODERATE 604A>G Ser202Gly
M0067678 HOHHHDLP_00016 16279 5 Skin 0.20 protein_coding missense_variant MODERATE 1315G>A Val439Met
M0067679 HOHHHDLP_00017 16304 5 Skin 0.20 protein_coding missense_variant MODERATE 220C>A Pro74Thr
M0067680 HOHHHDLP_00017 16339 5 Skin 0.20 protein_coding missense_variant MODERATE 185C>G Ala62Gly
M0067681 HOHHHDLP_00017 16383 6 Skin 0.24 protein_coding synonymous_variant LOW 141G>A Gly47Gly
M0067682 HOHHHDLP_00017 16386 6 Skin 0.24 protein_coding synonymous_variant LOW 138G>A Lys46Lys
M0067683 HOHHHDLP_00019 17475 5 Skin 0.20 protein_coding synonymous_variant LOW 288G>A Gln96Gln
M0067684 HOHHHDLP_00019 17568 4 Skin 0.16 protein_coding synonymous_variant LOW 381C>T Arg127Arg
M0067685 HOHHHDLP_00019 17619 4 Skin 0.16 protein_coding synonymous_variant LOW 432A>G Lys144Lys
M0067686 HOHHHDLP_00019 17814 3 Skin 0.12 protein_coding synonymous_variant LOW 627A>C Ala209Ala
M0067687 HOHHHDLP_00019 17826 6 Skin 0.24 protein_coding synonymous_variant LOW 639C>G Leu213Leu
M0067688 HOHHHDLP_00019 17919 5 Skin 0.20 protein_coding synonymous_variant LOW 732C>T Gly244Gly
M0067689 HOHHHDLP_00020 18535 3 Skin 0.12 protein_coding missense_variant MODERATE 157A>T Thr53Ser
M0067690 HOHHHDLP_00020 18820 5 Skin 0.20 protein_coding missense_variant MODERATE 442G>A Val148Ile
M0067691 HOHHHDLP_00020 19261 5 Skin 0.20 protein_coding missense_variant MODERATE 883C>A Pro295Thr
M0067692 HOHHHDLP_00017 19694 7 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -3171A>C None
M0067693 HOHHHDLP_00017 19880 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3357G>T None
M0067694 HOHHHDLP_00017 20000 5 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -3477A>G None
M0067695 HOHHHDLP_00017 20010 8 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -3487G>T None
M0067696 HOHHHDLP_00017 20048 7 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -3525A>G None
M0067697 HOHHHDLP_00017 20075 8 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -3552G>C None
M0067698 HOHHHDLP_00008 7216 5 Skin 0.20 protein_coding missense_variant MODERATE 739A>G Ser247Gly
M0067699 HOHHHDLP_00009 7400 4 Skin 0.16 protein_coding synonymous_variant LOW 60T>C His20His
M0067700 HOHHHDLP_00010 8278 5 Skin 0.20 protein_coding synonymous_variant LOW 108C>G Gly36Gly
M0067701 HOHHHDLP_00010 9166 3 Skin 0.12 protein_coding synonymous_variant LOW 996T>G Val332Val
M0067702 HOHHHDLP_00011 9875 4 Skin 0.16 protein_coding synonymous_variant LOW 561C>T Phe187Phe
M0067703 HOHHHDLP_00006 10021 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4525G>A None
M0067704 HOHHHDLP_00012 10263 6 Skin 0.24 protein_coding missense_variant MODERATE 203C>G Ser68Trp
M0067705 HOHHHDLP_00012 10338 4 Skin 0.16 protein_coding missense_variant MODERATE 278T>C Val93Ala
M0067706 HOHHHDLP_00012 11221 7 Skin 0.28 protein_coding synonymous_variant LOW 1161T>C Ala387Ala
M0067707 HOHHHDLP_00012 11229 7 Skin 0.28 protein_coding missense_variant MODERATE 1169G>A Arg390His
M0067708 HOHHHDLP_00013 11403 7 Skin 0.28 protein_coding synonymous_variant LOW 45A>G Thr15Thr
M0067709 HOHHHDLP_00013 11427 6 Skin 0.24 protein_coding synonymous_variant LOW 69C>A Ala23Ala
M0067710 HOHHHDLP_00013 11436 6 Skin 0.24 protein_coding synonymous_variant LOW 78G>C Pro26Pro
M0067711 HOHHHDLP_00013 11620 9 Skin 0.36 protein_coding missense_variant MODERATE 262G>T Ala88Ser
M0067712 HOHHHDLP_00013 11622 9 Skin 0.36 protein_coding synonymous_variant LOW 264G>A Ala88Ala
M0067713 HOHHHDLP_00013 11646 9 Skin 0.36 protein_coding synonymous_variant LOW 288G>C Thr96Thr
M0067714 HOHHHDLP_00013 11664 9 Skin 0.36 protein_coding synonymous_variant LOW 306T>C Ile102Ile
M0067715 HOHHHDLP_00013 11746 8 Skin 0.32 protein_coding missense_variant MODERATE 388G>T Ala130Ser
M0067716 HOHHHDLP_00013 11863 6 Skin 0.24 protein_coding missense_variant MODERATE 505G>A Gly169Ser
M0067717 HOHHHDLP_00013 12117 6 Skin 0.24 protein_coding synonymous_variant LOW 759T>C Ser253Ser
M0067718 HOHHHDLP_00014 13108 3 Skin 0.12 protein_coding synonymous_variant LOW 447G>A Ala149Ala
M0067719 HOHHHDLP_00014 13258 7 Skin 0.28 protein_coding synonymous_variant LOW 597T>C Tyr199Tyr
M0067720 HOHHHDLP_00013 12351 7 Skin 0.28 protein_coding synonymous_variant LOW 993T>C Ala331Ala
M0067721 HOHHHDLP_00013 12374 6 Skin 0.24 protein_coding missense_variant MODERATE 1016G>A Arg339His
M0067722 HOHHHDLP_00013 12375 7 Skin 0.28 protein_coding synonymous_variant LOW 1017T>C Arg339Arg
M0067723 HOHHHDLP_00013 12459 6 Skin 0.24 protein_coding synonymous_variant LOW 1101C>G Ala367Ala
M0067724 HOHHHDLP_00014 13112 3 Skin 0.12 protein_coding missense_variant MODERATE 451C>A Leu151Met
M0067725 HOHHHDLP_00014 13138 3 Skin 0.12 protein_coding synonymous_variant LOW 477G>A Gly159Gly
M0067726 HOHHHDLP_00015 13667 4 Skin 0.16 protein_coding synonymous_variant LOW 156C>A Gly52Gly
M0067727 HOHHHDLP_00015 13758 6 Skin 0.24 protein_coding synonymous_variant LOW 247T>C Leu83Leu
M0067728 HOHHHDLP_00015 14558 4 Skin 0.16 protein_coding synonymous_variant LOW 1047A>G Lys349Lys
M0067729 HOHHHDLP_00015 14681 6 Skin 0.24 protein_coding synonymous_variant LOW 1170G>A Glu390Glu
M0067730 HOHHHDLP_00015 14702 6 Skin 0.24 protein_coding synonymous_variant LOW 1191G>C Thr397Thr
M0067731 HOHHHDLP_00002 21 5 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1542C>G None
M0067732 HOHHHDLP_00002 48 5 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1515A>G None
M0067733 HOHHHDLP_00002 96 5 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1467G>A None
M0067734 HOHHHDLP_00002 108 5 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1455A>G None
M0067735 HOHHHDLP_00002 283 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1280C>T None
M0067736 HOHHHDLP_00002 291 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1272C>T None
M0067737 HOHHHDLP_00002 295 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1268G>C None
M0067738 HOHHHDLP_00002 297 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1266C>A None
M0067739 HOHHHDLP_00002 300 4 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1263A>G None
M0067740 HOHHHDLP_00001 689 5 Skin 0.20 protein_coding missense_variant MODERATE 682G>T Gly228Cys
M0067741 HOHHHDLP_00001 1035 6 Skin 0.24 protein_coding synonymous_variant LOW 336C>G Val112Val
M0067742 HOHHHDLP_00001 1065 6 Skin 0.24 protein_coding synonymous_variant LOW 306G>C Thr102Thr
M0067743 HOHHHDLP_00001 1067 6 Skin 0.24 protein_coding missense_variant MODERATE 304A>G Thr102Ala
M0067744 HOHHHDLP_00001 1068 6 Skin 0.24 protein_coding synonymous_variant LOW 303C>T Arg101Arg
M0067745 HOHHHDLP_00001 1179 6 Skin 0.24 protein_coding synonymous_variant LOW 192T>C Asp64Asp
M0067746 HOHHHDLP_00002 2131 4 Skin 0.16 protein_coding missense_variant MODERATE 569G>A Arg190Gln
M0067747 HOHHHDLP_00002 2217 3 Skin 0.12 protein_coding missense_variant MODERATE 655A>C Ser219Arg
M0067748 HOHHHDLP_00002 2219 3 Skin 0.12 protein_coding synonymous_variant LOW 657C>T Ser219Ser
M0067749 HOHHHDLP_00001 3398 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2028C>G None
M0067750 HOHHHDLP_00001 3410 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2040C>A None
M0067751 HOHHHDLP_00004 4294 3 Skin 0.12 protein_coding missense_variant MODERATE 8T>C Val3Ala
M0067752 HOHHHDLP_00005 4318 3 Skin 0.12 protein_coding synonymous_variant LOW 681A>G Ala227Ala
M0067753 HOHHHDLP_00005 4324 3 Skin 0.12 protein_coding synonymous_variant LOW 675G>C Thr225Thr
M0067754 HOHHHDLP_00005 4326 3 Skin 0.12 protein_coding missense_variant MODERATE 673A>C Thr225Pro
M0067755 HOHHHDLP_00007 6147 4 Skin 0.16 protein_coding synonymous_variant LOW 510C>T Arg170Arg
M0067756 HOHHHDLP_00001 6216 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4846G>C None
M0067757 HOHHHDLP_00001 6231 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4861A>C None
M0067758 HOHHHDLP_00001 6262 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4892C>T None
M0067759 HOHHHDLP_00016 14916 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -49C>T None
M0067760 HOHHHDLP_00016 15228 5 Skin 0.20 protein_coding synonymous_variant LOW 264A>G Gly88Gly
M0067761 HOHHHDLP_00018 17092 3 Skin 0.12 protein_coding synonymous_variant LOW 531C>G Arg177Arg
M0067762 HOHHHDLP_00018 17108 3 Skin 0.12 protein_coding synonymous_variant LOW 547C>T Leu183Leu
M0067763 HOHHHDLP_00018 17136 3 Skin 0.12 protein_coding missense_variant MODERATE 575C>T Ala192Val
M0067764 HOHHHDLP_00018 17142 3 Skin 0.12 protein_coding missense_variant MODERATE 581C>A Pro194Gln
M0067765 HOHHHDLP_00018 17146 3 Skin 0.12 protein_coding synonymous_variant LOW 585T>C Pro195Pro
M0067766 HOHHHDLP_00019 17197 3 Skin 0.12 protein_coding missense_variant MODERATE 10G>T Ala4Ser
M0067767 HOHHHDLP_00019 17200 3 Skin 0.12 protein_coding missense_variant MODERATE 13C>G Gln5Glu
M0067768 HOHHHDLP_00019 17253 3 Skin 0.12 protein_coding synonymous_variant LOW 66T>G Leu22Leu
M0067769 HOHHHDLP_00019 17354 3 Skin 0.12 protein_coding missense_variant MODERATE 167A>C Glu56Ala
M0067770 HOHHHDLP_00017 20099 7 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -3576G>A None
M0067771 HOHHHDLP_00019 17409 3 Skin 0.12 protein_coding synonymous_variant LOW 222G>C Leu74Leu
M0067772 HOHHHDLP_00020 18686 4 Skin 0.16 protein_coding missense_variant MODERATE 308C>T Ala103Val
M0067773 HOHHHDLP_00020 18873 4 Skin 0.16 protein_coding synonymous_variant LOW 495T>C Gly165Gly
M0067774 HOHHHDLP_00020 18912 4 Skin 0.16 protein_coding synonymous_variant LOW 534G>A Ala178Ala
M0067775 HOHHHDLP_00020 18933 4 Skin 0.16 protein_coding synonymous_variant LOW 555C>T His185His
M0067776 HOHHHDLP_00020 18945 4 Skin 0.16 protein_coding synonymous_variant LOW 567G>A Ala189Ala
M0067777 HOHHHDLP_00013 12483 5 Skin 0.20 protein_coding synonymous_variant LOW 1125A>G Ala375Ala
M0067778 HOHHHDLP_00015 13583 3 Skin 0.12 protein_coding synonymous_variant LOW 72C>G Gly24Gly
M0067779 HOHHHDLP_00015 13820 3 Skin 0.12 protein_coding synonymous_variant LOW 309C>T Gly103Gly
M0067780 HOHHHDLP_00015 13901 6 Skin 0.24 protein_coding synonymous_variant LOW 390C>T Asn130Asn
M0067781 HOHHHDLP_00015 13965 5 Skin 0.20 protein_coding missense_variant MODERATE 454A>G Asn152Asp
M0067782 HOHHHDLP_00015 14045 5 Skin 0.20 protein_coding synonymous_variant LOW 534C>T Ser178Ser
M0067783 HOHHHDLP_00015 14421 5 Skin 0.20 protein_coding missense_variant MODERATE 910T>G Ser304Ala
M0067784 HOHHHDLP_00015 14483 5 Skin 0.20 protein_coding synonymous_variant LOW 972C>G Ala324Ala
M0067785 HOHHHDLP_00003 2883 3 Skin 0.12 protein_coding synonymous_variant LOW 477C>T Ser159Ser
M0067786 HOHHHDLP_00003 2940 3 Skin 0.12 protein_coding synonymous_variant LOW 420C>T Gly140Gly
M0067787 HOHHHDLP_00008 6846 3 Skin 0.12 protein_coding synonymous_variant LOW 369T>A Gly123Gly
M0067788 HOHHHDLP_00008 6855 3 Skin 0.12 protein_coding synonymous_variant LOW 378G>C Val126Val
M0067789 HOHHHDLP_00008 6867 3 Skin 0.12 protein_coding synonymous_variant LOW 390T>C Asn130Asn
M0067790 HOHHHDLP_00009 7904 4 Skin 0.16 protein_coding synonymous_variant LOW 564A>C Ala188Ala
M0067791 HOHHHDLP_00009 7964 4 Skin 0.16 protein_coding synonymous_variant LOW 624A>G Ala208Ala
M0067792 HOHHHDLP_00009 7977 3 Skin 0.12 protein_coding missense_variant MODERATE 637G>A Glu213Lys
M0067793 HOHHHDLP_00010 8258 3 Skin 0.12 protein_coding missense_variant MODERATE 88A>G Thr30Ala
M0067794 HOHHHDLP_00010 8602 3 Skin 0.12 protein_coding synonymous_variant LOW 432G>C Pro144Pro
M0067795 HOHHHDLP_00010 8647 3 Skin 0.12 protein_coding synonymous_variant LOW 477G>C Val159Val
M0067796 HOHHHDLP_00010 8992 4 Skin 0.16 protein_coding synonymous_variant LOW 822A>C Ala274Ala
M0067797 HOHHHDLP_00012 11069 4 Skin 0.16 protein_coding missense_variant MODERATE 1009A>G Thr337Ala
M0067798 HOHHHDLP_00012 11071 4 Skin 0.16 protein_coding synonymous_variant LOW 1011G>A Thr337Thr
M0067799 HOHHHDLP_00012 11086 3 Skin 0.12 protein_coding synonymous_variant LOW 1026G>T Ala342Ala
M0067800 HOHHHDLP_00014 13041 4 Skin 0.16 protein_coding missense_variant MODERATE 380A>G Asp127Gly
M0067801 HOHHHDLP_00015 14123 5 Skin 0.20 protein_coding synonymous_variant LOW 612T>C His204His
M0067802 HOHHHDLP_00015 14231 4 Skin 0.16 protein_coding synonymous_variant LOW 720G>A Ala240Ala
M0067803 HOHHHDLP_00015 14378 4 Skin 0.16 protein_coding synonymous_variant LOW 867A>C Gly289Gly
M0067804 HOHHHDLP_00019 17757 3 Skin 0.12 protein_coding synonymous_variant LOW 570C>G Gly190Gly
M0067805 HOHHHDLP_00014 12856 3 Skin 0.12 protein_coding synonymous_variant LOW 195C>T Asp65Asp
M0067806 HOHHHDLP_00015 14101 4 Skin 0.16 protein_coding missense_variant MODERATE 590G>A Gly197Asp
M0067807 HOHHHDLP_00015 14324 3 Skin 0.12 protein_coding synonymous_variant LOW 813G>T Ala271Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term