Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2955
  Reference Plasmid   DS1912041100-1_bin.11__k141_8801
  Reference Plasmid Size   13502
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0068055 JGIFEBGK_00012 9297 9 Skin 0.45 protein_coding synonymous_variant LOW 36G>A Gln12Gln
M0068056 JGIFEBGK_00012 9444 4 Skin 0.20 protein_coding synonymous_variant LOW 183C>T Asp61Asp
M0068057 JGIFEBGK_00012 9798 5 Skin 0.25 protein_coding synonymous_variant LOW 537T>C Arg179Arg
M0068058 JGIFEBGK_00012 9804 5 Skin 0.25 protein_coding synonymous_variant LOW 543A>G Glu181Glu
M0068059 JGIFEBGK_00012 9807 5 Skin 0.25 protein_coding synonymous_variant LOW 546C>G Leu182Leu
M0068060 JGIFEBGK_00012 9810 5 Skin 0.25 protein_coding synonymous_variant LOW 549G>A Ala183Ala
M0068061 JGIFEBGK_00012 10062 5 Skin 0.25 protein_coding synonymous_variant LOW 801C>T Cys267Cys
M0068062 JGIFEBGK_00012 10184 7 Skin 0.35 protein_coding missense_variant MODERATE 923G>A Arg308His
M0068063 JGIFEBGK_00013 10441 3 Skin 0.15 protein_coding synonymous_variant LOW 132A>G Val44Val
M0068064 JGIFEBGK_00013 10477 3 Skin 0.15 protein_coding synonymous_variant LOW 168C>T Ala56Ala
M0068065 JGIFEBGK_00013 10561 4 Skin 0.20 protein_coding synonymous_variant LOW 252G>C Thr84Thr
M0068066 JGIFEBGK_00013 10564 4 Skin 0.20 protein_coding synonymous_variant LOW 255T>G Leu85Leu
M0068067 JGIFEBGK_00013 10858 7 Skin 0.35 protein_coding synonymous_variant LOW 549C>G Leu183Leu
M0068068 JGIFEBGK_00013 10924 4 Skin 0.20 protein_coding synonymous_variant LOW 615C>T Cys205Cys
M0068069 JGIFEBGK_00013 10941 4 Skin 0.20 protein_coding missense_variant MODERATE 632C>G Thr211Ser
M0068070 JGIFEBGK_00014 11357 4 Skin 0.20 protein_coding synonymous_variant LOW 141G>C Ala47Ala
M0068071 JGIFEBGK_00015 11909 5 Skin 0.25 protein_coding missense_variant MODERATE 1154T>C Val385Ala
M0068072 JGIFEBGK_00015 11928 5 Skin 0.25 protein_coding missense_variant MODERATE 1135A>C Met379Leu
M0068073 JGIFEBGK_00015 11948 5 Skin 0.25 protein_coding missense_variant MODERATE 1115T>A Leu372Gln
M0068074 JGIFEBGK_00015 11950 5 Skin 0.25 protein_coding synonymous_variant LOW 1113C>A Gly371Gly
M0068075 JGIFEBGK_00015 12163 3 Skin 0.15 protein_coding synonymous_variant LOW 900A>G Ala300Ala
M0068076 JGIFEBGK_00015 12757 4 Skin 0.20 protein_coding synonymous_variant LOW 306C>T Asp102Asp
M0068077 JGIFEBGK_00015 12772 4 Skin 0.20 protein_coding synonymous_variant LOW 291C>G Thr97Thr
M0068078 JGIFEBGK_00015 12841 3 Skin 0.15 protein_coding synonymous_variant LOW 222A>G Gln74Gln
M0068079 JGIFEBGK_00015 13089 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -27G>T None
M0068080 JGIFEBGK_00015 13099 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -37C>A None
M0068081 JGIFEBGK_00015 13109 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -47A>G None
M0068082 JGIFEBGK_00015 13128 3 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -66G>A None
M0068083 JGIFEBGK_00003 1163 4 Skin 0.20 protein_coding missense_variant MODERATE 197A>G Asn66Ser
M0068084 JGIFEBGK_00003 1164 4 Skin 0.20 protein_coding synonymous_variant LOW 198T>C Asn66Asn
M0068085 JGIFEBGK_00003 1185 4 Skin 0.20 protein_coding synonymous_variant LOW 219T>C Asp73Asp
M0068086 JGIFEBGK_00003 1189 4 Skin 0.20 protein_coding missense_variant MODERATE 223G>A Val75Met
M0068087 JGIFEBGK_00003 1203 4 Skin 0.20 protein_coding synonymous_variant LOW 237G>C Leu79Leu
M0068088 JGIFEBGK_00003 1236 5 Skin 0.25 protein_coding synonymous_variant LOW 270A>C Ser90Ser
M0068089 JGIFEBGK_00003 1626 6 Skin 0.30 protein_coding synonymous_variant LOW 660T>C Phe220Phe
M0068090 JGIFEBGK_00004 2051 6 Skin 0.30 protein_coding synonymous_variant LOW 189C>A Ser63Ser
M0068091 JGIFEBGK_00007 2234 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2384A>C None
M0068092 JGIFEBGK_00005 2903 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -333G>T None
M0068093 JGIFEBGK_00005 2919 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -349A>G None
M0068094 JGIFEBGK_00005 2939 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -369G>T None
M0068095 JGIFEBGK_00005 2969 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -399C>T None
M0068096 JGIFEBGK_00005 2992 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -422A>T None
M0068097 JGIFEBGK_00005 3014 6 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -444A>G None
M0068098 JGIFEBGK_00005 3015 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -445C>G None
M0068099 JGIFEBGK_00005 3037 7 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -467C>A None
M0068100 JGIFEBGK_00006 3105 6 Skin 0.30 protein_coding synonymous_variant LOW 1344C>T Gly448Gly
M0068101 JGIFEBGK_00006 3303 3 Skin 0.15 protein_coding synonymous_variant LOW 1146T>G Ala382Ala
M0068102 JGIFEBGK_00006 3312 3 Skin 0.15 protein_coding synonymous_variant LOW 1137G>C Val379Val
M0068103 JGIFEBGK_00006 3330 3 Skin 0.15 protein_coding synonymous_variant LOW 1119T>G Ser373Ser
M0068104 JGIFEBGK_00006 3714 5 Skin 0.25 protein_coding synonymous_variant LOW 735T>C Gly245Gly
M0068105 JGIFEBGK_00008 5634 4 Skin 0.20 protein_coding synonymous_variant LOW 111C>T Arg37Arg
M0068106 JGIFEBGK_00008 5802 4 Skin 0.20 protein_coding synonymous_variant LOW 279C>T Pro93Pro
M0068107 JGIFEBGK_00008 5805 5 Skin 0.25 protein_coding synonymous_variant LOW 282T>C Cys94Cys
M0068108 JGIFEBGK_00008 5981 4 Skin 0.20 protein_coding missense_variant MODERATE 458G>T Cys153Phe
M0068109 JGIFEBGK_00001 154 4 Skin 0.20 protein_coding synonymous_variant LOW 33C>G Arg11Arg
M0068110 JGIFEBGK_00002 323 3 Skin 0.15 protein_coding missense_variant MODERATE 7T>C Ser3Pro
M0068111 JGIFEBGK_00002 363 3 Skin 0.15 protein_coding missense_variant MODERATE 47C>A Pro16His
M0068112 JGIFEBGK_00002 436 4 Skin 0.20 protein_coding synonymous_variant LOW 120T>C Ile40Ile
M0068113 JGIFEBGK_00002 964 6 Skin 0.30 protein_coding synonymous_variant LOW 648C>A Ser216Ser
M0068114 JGIFEBGK_00003 1010 7 Skin 0.35 protein_coding missense_variant MODERATE 44A>C Glu15Ala
M0068115 JGIFEBGK_00003 1022 7 Skin 0.35 protein_coding missense_variant MODERATE 56G>A Arg19His
M0068116 JGIFEBGK_00003 1307 6 Skin 0.30 protein_coding missense_variant MODERATE 341G>A Gly114Glu
M0068117 JGIFEBGK_00003 1353 3 Skin 0.15 protein_coding synonymous_variant LOW 387T>C His129His
M0068118 JGIFEBGK_00003 1361 3 Skin 0.15 protein_coding missense_variant MODERATE 395G>C Ser132Thr
M0068119 JGIFEBGK_00010 8259 3 Skin 0.15 protein_coding synonymous_variant LOW 645T>C Gly215Gly
M0068120 JGIFEBGK_00010 8307 5 Skin 0.25 protein_coding synonymous_variant LOW 693C>G Thr231Thr
M0068121 JGIFEBGK_00010 8454 3 Skin 0.15 protein_coding synonymous_variant LOW 840G>C Pro280Pro
M0068122 JGIFEBGK_00010 8457 3 Skin 0.15 protein_coding synonymous_variant LOW 843A>C Ala281Ala
M0068123 JGIFEBGK_00011 8498 3 Skin 0.15 protein_coding synonymous_variant LOW 24A>G Pro8Pro
M0068124 JGIFEBGK_00011 8519 3 Skin 0.15 protein_coding synonymous_variant LOW 45C>G Thr15Thr
M0068125 JGIFEBGK_00011 8532 3 Skin 0.15 protein_coding missense_variant MODERATE 58C>G Leu20Val
M0068126 JGIFEBGK_00011 8561 3 Skin 0.15 protein_coding synonymous_variant LOW 87C>G Ser29Ser
M0068127 JGIFEBGK_00011 8601 3 Skin 0.15 protein_coding missense_variant MODERATE 127G>T Ala43Ser
M0068128 JGIFEBGK_00011 8606 3 Skin 0.15 protein_coding synonymous_variant LOW 132T>C Ser44Ser
M0068129 JGIFEBGK_00011 8609 3 Skin 0.15 protein_coding synonymous_variant LOW 135C>A Gly45Gly
M0068130 JGIFEBGK_00011 8969 4 Skin 0.20 protein_coding synonymous_variant LOW 495A>T Ala165Ala
M0068131 JGIFEBGK_00012 9573 3 Skin 0.15 protein_coding synonymous_variant LOW 312C>T Tyr104Tyr
M0068132 JGIFEBGK_00012 9897 3 Skin 0.15 protein_coding synonymous_variant LOW 636C>G Val212Val
M0068133 JGIFEBGK_00014 11411 3 Skin 0.15 protein_coding synonymous_variant LOW 195G>T Leu65Leu
M0068134 JGIFEBGK_00014 11420 3 Skin 0.15 protein_coding synonymous_variant LOW 204C>A Ile68Ile
M0068135 JGIFEBGK_00014 11429 3 Skin 0.15 protein_coding synonymous_variant LOW 213G>T Leu71Leu
M0068136 JGIFEBGK_00015 12045 4 Skin 0.20 protein_coding missense_variant MODERATE 1018T>G Ser340Ala
M0068137 JGIFEBGK_00002 508 6 Skin 0.30 protein_coding synonymous_variant LOW 192T>G Thr64Thr
M0068138 JGIFEBGK_00002 544 6 Skin 0.30 protein_coding synonymous_variant LOW 228T>C His76His
M0068139 JGIFEBGK_00002 577 6 Skin 0.30 protein_coding synonymous_variant LOW 261A>G Gly87Gly
M0068140 JGIFEBGK_00002 578 6 Skin 0.30 protein_coding synonymous_variant LOW 262T>C Leu88Leu
M0068141 JGIFEBGK_00002 595 6 Skin 0.30 protein_coding synonymous_variant LOW 279G>C Leu93Leu
M0068142 JGIFEBGK_00002 688 7 Skin 0.35 protein_coding synonymous_variant LOW 372C>G Leu124Leu
M0068143 JGIFEBGK_00002 694 7 Skin 0.35 protein_coding synonymous_variant LOW 378T>C His126His
M0068144 JGIFEBGK_00003 1410 3 Skin 0.15 protein_coding synonymous_variant LOW 444C>T His148His
M0068145 JGIFEBGK_00006 3456 3 Skin 0.15 protein_coding synonymous_variant LOW 993T>C Ala331Ala
M0068146 JGIFEBGK_00006 3462 3 Skin 0.15 protein_coding synonymous_variant LOW 987A>C Gly329Gly
M0068147 JGIFEBGK_00006 4175 3 Skin 0.15 protein_coding missense_variant MODERATE 274G>T Ala92Ser
M0068148 JGIFEBGK_00007 5151 4 Skin 0.20 protein_coding synonymous_variant LOW 534C>G Arg178Arg
M0068149 JGIFEBGK_00008 5928 3 Skin 0.15 protein_coding synonymous_variant LOW 405T>C Arg135Arg
M0068150 JGIFEBGK_00008 6236 3 Skin 0.15 protein_coding missense_variant MODERATE 713C>T Ala238Val
M0068151 JGIFEBGK_00008 6270 3 Skin 0.15 protein_coding synonymous_variant LOW 747A>C Ile249Ile
M0068152 JGIFEBGK_00008 6295 3 Skin 0.15 protein_coding missense_variant MODERATE 772T>C Ser258Pro
M0068153 JGIFEBGK_00008 6296 3 Skin 0.15 protein_coding missense_variant MODERATE 773C>G Ser258Cys
M0068154 JGIFEBGK_00008 6305 3 Skin 0.15 protein_coding missense_variant MODERATE 782G>C Gly261Ala
M0068155 JGIFEBGK_00008 6430 3 Skin 0.15 protein_coding synonymous_variant LOW 907T>C Leu303Leu
M0068156 JGIFEBGK_00011 9185 4 Skin 0.20 protein_coding synonymous_variant LOW 711C>T Tyr237Tyr
M0068157 JGIFEBGK_00013 10733 3 Skin 0.15 protein_coding synonymous_variant LOW 424C>T Leu142Leu
M0068158 JGIFEBGK_00013 10738 3 Skin 0.15 protein_coding synonymous_variant LOW 429T>C Cys143Cys
M0068159 JGIFEBGK_00013 10744 3 Skin 0.15 protein_coding synonymous_variant LOW 435G>A Glu145Glu
M0068160 JGIFEBGK_00013 10771 3 Skin 0.15 protein_coding synonymous_variant LOW 462G>C Leu154Leu
M0068161 JGIFEBGK_00013 10772 3 Skin 0.15 protein_coding missense_variant MODERATE 463G>A Ala155Thr
M0068162 JGIFEBGK_00013 10798 3 Skin 0.15 protein_coding synonymous_variant LOW 489C>G Val163Val
M0068163 JGIFEBGK_00002 838 3 Skin 0.15 protein_coding synonymous_variant LOW 522A>G Glu174Glu
M0068164 JGIFEBGK_00002 845 3 Skin 0.15 protein_coding synonymous_variant LOW 529C>A Arg177Arg
M0068165 JGIFEBGK_00002 869 3 Skin 0.15 protein_coding missense_variant MODERATE 553T>G Ser185Ala
M0068166 JGIFEBGK_00002 871 3 Skin 0.15 protein_coding synonymous_variant LOW 555C>T Ser185Ser
M0068167 JGIFEBGK_00002 880 3 Skin 0.15 protein_coding synonymous_variant LOW 564G>C Val188Val
M0068168 JGIFEBGK_00002 886 3 Skin 0.15 protein_coding synonymous_variant LOW 570C>T Phe190Phe
M0068169 JGIFEBGK_00002 892 3 Skin 0.15 protein_coding synonymous_variant LOW 576C>G Val192Val
M0068170 JGIFEBGK_00006 4311 3 Skin 0.15 protein_coding synonymous_variant LOW 138C>G Thr46Thr
M0068171 JGIFEBGK_00010 8373 6 Skin 0.30 protein_coding synonymous_variant LOW 759T>C Phe253Phe
M0068172 JGIFEBGK_00011 9035 4 Skin 0.20 protein_coding synonymous_variant LOW 561T>C Pro187Pro
M0068173 JGIFEBGK_00011 9047 4 Skin 0.20 protein_coding synonymous_variant LOW 573T>C Ala191Ala
M0068174 JGIFEBGK_00014 11744 3 Skin 0.15 protein_coding synonymous_variant LOW 528C>T Ser176Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term