Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2956
  Reference Plasmid   DS1912041100-1_bin.14__k141_10353
  Reference Plasmid Size   27689
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0068175 BNFEALDC_00003 4346 3 Skin 0.25 protein_coding synonymous_variant LOW 270T>C Gly90Gly
M0068176 BNFEALDC_00003 4550 3 Skin 0.25 protein_coding synonymous_variant LOW 474C>T Thr158Thr
M0068177 BNFEALDC_00003 4755 3 Skin 0.25 protein_coding missense_variant MODERATE 679A>G Ile227Val
M0068178 BNFEALDC_00004 4868 3 Skin 0.25 protein_coding synonymous_variant LOW 37T>C Leu13Leu
M0068179 BNFEALDC_00004 5179 3 Skin 0.25 protein_coding synonymous_variant LOW 348A>G Val116Val
M0068180 BNFEALDC_00004 6856 3 Skin 0.25 protein_coding synonymous_variant LOW 2025T>G Ser675Ser
M0068181 BNFEALDC_00005 7079 3 Skin 0.25 protein_coding synonymous_variant LOW 69A>G Glu23Glu
M0068182 BNFEALDC_00005 7148 3 Skin 0.25 protein_coding synonymous_variant LOW 138T>C Ala46Ala
M0068183 BNFEALDC_00005 7253 3 Skin 0.25 protein_coding synonymous_variant LOW 243T>C Thr81Thr
M0068184 BNFEALDC_00005 7415 3 Skin 0.25 protein_coding synonymous_variant LOW 405T>C Leu135Leu
M0068185 BNFEALDC_00005 7646 3 Skin 0.25 protein_coding synonymous_variant LOW 636A>G Glu212Glu
M0068186 BNFEALDC_00005 7988 3 Skin 0.25 protein_coding synonymous_variant LOW 978C>T Val326Val
M0068187 BNFEALDC_00013 15352 3 Skin 0.25 protein_coding synonymous_variant LOW 132A>G Gln44Gln
M0068188 BNFEALDC_00013 15601 3 Skin 0.25 protein_coding synonymous_variant LOW 381T>C Ala127Ala
M0068189 BNFEALDC_00013 15919 3 Skin 0.25 protein_coding synonymous_variant LOW 699T>C Ala233Ala
M0068190 BNFEALDC_00015 21347 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4819G>A None
M0068191 BNFEALDC_00025 21682 6 Skin 0.50 protein_coding synonymous_variant LOW 198T>C Phe66Phe
M0068192 BNFEALDC_00025 21700 4 Skin 0.33 protein_coding synonymous_variant LOW 180C>T Asp60Asp
M0068193 BNFEALDC_00025 21769 5 Skin 0.42 protein_coding synonymous_variant LOW 111C>T Ser37Ser
M0068194 BNFEALDC_00025 21795 5 Skin 0.42 protein_coding missense_variant MODERATE 85G>A Asp29Asn
M0068195 BNFEALDC_00017 21883 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4267T>G None
M0068196 BNFEALDC_00026 21912 4 Skin 0.33 protein_coding missense_variant MODERATE 776T>G Met259Arg
M0068197 BNFEALDC_00026 21913 6 Skin 0.50 protein_coding missense_variant MODERATE 775A>G Met259Val
M0068198 BNFEALDC_00026 21919 6 Skin 0.50 protein_coding missense_variant MODERATE 769A>G Ser257Gly
M0068199 BNFEALDC_00026 21921 4 Skin 0.33 protein_coding missense_variant MODERATE 767C>T Ala256Val
M0068200 BNFEALDC_00026 21929 4 Skin 0.33 protein_coding synonymous_variant LOW 759G>A Ala253Ala
M0068201 BNFEALDC_00026 21935 4 Skin 0.33 protein_coding synonymous_variant LOW 753T>C Phe251Phe
M0068202 BNFEALDC_00026 21983 6 Skin 0.50 protein_coding synonymous_variant LOW 705T>C Thr235Thr
M0068203 BNFEALDC_00026 21997 4 Skin 0.33 protein_coding missense_variant MODERATE 691G>A Val231Ile
M0068204 BNFEALDC_00026 21999 4 Skin 0.33 protein_coding missense_variant MODERATE 689A>G Asn230Ser
M0068205 BNFEALDC_00026 22014 6 Skin 0.50 protein_coding missense_variant MODERATE 674T>A Phe225Tyr
M0068206 BNFEALDC_00026 22022 4 Skin 0.33 protein_coding synonymous_variant LOW 666T>C Thr222Thr
M0068207 BNFEALDC_00026 22034 6 Skin 0.50 protein_coding synonymous_variant LOW 654A>G Arg218Arg
M0068208 BNFEALDC_00026 22106 4 Skin 0.33 protein_coding synonymous_variant LOW 582T>C Ala194Ala
M0068209 BNFEALDC_00026 22139 6 Skin 0.50 protein_coding synonymous_variant LOW 549A>G Ser183Ser
M0068210 BNFEALDC_00026 22141 6 Skin 0.50 protein_coding missense_variant MODERATE 547T>G Ser183Ala
M0068211 BNFEALDC_00026 22474 4 Skin 0.33 protein_coding missense_variant MODERATE 214A>G Thr72Ala
M0068212 BNFEALDC_00026 22484 4 Skin 0.33 protein_coding synonymous_variant LOW 204G>C Thr68Thr
M0068213 BNFEALDC_00026 22492 4 Skin 0.33 protein_coding missense_variant MODERATE 196T>C Phe66Leu
M0068214 BNFEALDC_00026 22517 4 Skin 0.33 protein_coding missense_variant MODERATE 171C>G Phe57Leu
M0068215 BNFEALDC_00026 22525 4 Skin 0.33 protein_coding synonymous_variant LOW 163C>T Leu55Leu
M0068216 BNFEALDC_00026 22565 6 Skin 0.50 protein_coding synonymous_variant LOW 123A>G Leu41Leu
M0068217 BNFEALDC_00026 22616 6 Skin 0.50 protein_coding synonymous_variant LOW 72T>C Phe24Phe
M0068218 BNFEALDC_00026 22619 6 Skin 0.50 protein_coding synonymous_variant LOW 69T>C Pro23Pro
M0068219 BNFEALDC_00026 22661 4 Skin 0.33 protein_coding synonymous_variant LOW 27T>C Ala9Ala
M0068220 BNFEALDC_00021 22708 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3523G>A None
M0068221 BNFEALDC_00021 22713 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3528T>C None
M0068222 BNFEALDC_00021 22714 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3529T>C None
M0068223 BNFEALDC_00021 22716 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3531G>T None
M0068224 BNFEALDC_00021 22724 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3539G>A None
M0068225 BNFEALDC_00021 22728 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3543C>G None
M0068226 BNFEALDC_00027 22813 5 Skin 0.42 protein_coding synonymous_variant LOW 765T>C Asp255Asp
M0068227 BNFEALDC_00027 22903 6 Skin 0.50 protein_coding synonymous_variant LOW 675G>A Glu225Glu
M0068228 BNFEALDC_00027 22906 6 Skin 0.50 protein_coding synonymous_variant LOW 672A>G Lys224Lys
M0068229 BNFEALDC_00027 22933 6 Skin 0.50 protein_coding synonymous_variant LOW 645T>C Asp215Asp
M0068230 BNFEALDC_00027 23011 3 Skin 0.25 protein_coding synonymous_variant LOW 567C>G Val189Val
M0068231 BNFEALDC_00027 23113 4 Skin 0.33 protein_coding synonymous_variant LOW 465A>C Ala155Ala
M0068232 BNFEALDC_00027 23317 4 Skin 0.33 protein_coding synonymous_variant LOW 261C>T Ile87Ile
M0068233 BNFEALDC_00027 23395 4 Skin 0.33 protein_coding synonymous_variant LOW 183C>G Ser61Ser
M0068234 BNFEALDC_00028 23979 3 Skin 0.25 protein_coding synonymous_variant LOW 777A>G Glu259Glu
M0068235 BNFEALDC_00028 24057 3 Skin 0.25 protein_coding synonymous_variant LOW 699T>C Ile233Ile
M0068236 BNFEALDC_00028 24369 6 Skin 0.50 protein_coding synonymous_variant LOW 387T>C Pro129Pro
M0068237 BNFEALDC_00028 24498 6 Skin 0.50 protein_coding synonymous_variant LOW 258A>C Ile86Ile
M0068238 BNFEALDC_00028 24648 5 Skin 0.42 protein_coding synonymous_variant LOW 108C>T Phe36Phe
M0068239 BNFEALDC_00028 24651 5 Skin 0.42 protein_coding synonymous_variant LOW 105T>G Ser35Ser
M0068240 BNFEALDC_00028 24742 5 Skin 0.42 protein_coding missense_variant MODERATE 14C>T Ser5Leu
M0068241 BNFEALDC_00025 24855 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -2976A>C None
M0068242 BNFEALDC_00025 21724 3 Skin 0.25 protein_coding synonymous_variant LOW 156T>C Gly52Gly
M0068243 BNFEALDC_00025 21802 3 Skin 0.25 protein_coding synonymous_variant LOW 78C>T Tyr26Tyr
M0068244 BNFEALDC_00021 22777 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3592G>T None
M0068245 BNFEALDC_00028 24105 5 Skin 0.42 protein_coding synonymous_variant LOW 651A>G Arg217Arg
M0068246 BNFEALDC_00028 24270 3 Skin 0.25 protein_coding synonymous_variant LOW 486C>T Asn162Asn
M0068247 BNFEALDC_00028 24291 3 Skin 0.25 protein_coding synonymous_variant LOW 465C>G Leu155Leu
M0068248 BNFEALDC_00028 24294 3 Skin 0.25 protein_coding synonymous_variant LOW 462G>A Glu154Glu
M0068249 BNFEALDC_00028 24339 3 Skin 0.25 protein_coding synonymous_variant LOW 417A>G Ala139Ala
M0068250 BNFEALDC_00028 24654 4 Skin 0.33 protein_coding synonymous_variant LOW 102T>C Gly34Gly
M0068251 BNFEALDC_00029 24921 3 Skin 0.25 protein_coding synonymous_variant LOW 51G>A Gln17Gln
M0068252 BNFEALDC_00029 24924 3 Skin 0.25 protein_coding synonymous_variant LOW 54C>T Gly18Gly
M0068253 BNFEALDC_00029 24942 3 Skin 0.25 protein_coding synonymous_variant LOW 72C>T Gly24Gly
M0068254 BNFEALDC_00008 10368 3 Skin 0.25 protein_coding synonymous_variant LOW 1002C>T Pro334Pro
M0068255 BNFEALDC_00008 10458 3 Skin 0.25 protein_coding synonymous_variant LOW 912A>G Ala304Ala
M0068256 BNFEALDC_00008 10569 3 Skin 0.25 protein_coding synonymous_variant LOW 801G>A Glu267Glu
M0068257 BNFEALDC_00008 10584 3 Skin 0.25 protein_coding synonymous_variant LOW 786C>G Gly262Gly
M0068258 BNFEALDC_00008 10590 3 Skin 0.25 protein_coding synonymous_variant LOW 780T>C Gly260Gly
M0068259 BNFEALDC_00008 10596 3 Skin 0.25 protein_coding synonymous_variant LOW 774G>A Leu258Leu
M0068260 BNFEALDC_00008 10602 3 Skin 0.25 protein_coding synonymous_variant LOW 768C>T Leu256Leu
M0068261 BNFEALDC_00008 10611 3 Skin 0.25 protein_coding missense_variant MODERATE 759C>A Asn253Lys
M0068262 BNFEALDC_00008 10621 3 Skin 0.25 protein_coding missense_variant MODERATE 749A>G Asp250Gly
M0068263 BNFEALDC_00008 11130 3 Skin 0.25 protein_coding synonymous_variant LOW 240T>C Gly80Gly
M0068264 BNFEALDC_00026 22127 3 Skin 0.25 protein_coding synonymous_variant LOW 561A>C Ala187Ala
M0068265 BNFEALDC_00026 22576 3 Skin 0.25 protein_coding missense_variant MODERATE 112T>G Phe38Val
M0068266 BNFEALDC_00027 23050 3 Skin 0.25 protein_coding synonymous_variant LOW 528C>G Thr176Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term