Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2957
  Reference Plasmid   DS1912041100-1_bin.14__k141_63794
  Reference Plasmid Size   51493
  Reference Plasmid GC Content   0.67
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0068267 PFGKAFMA_00017 14720 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -329C>G None
M0068268 PFGKAFMA_00017 14873 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -482A>G None
M0068269 PFGKAFMA_00017 15065 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -674A>G None
M0068270 PFGKAFMA_00019 15409 4 Skin 0.15 protein_coding synonymous_variant LOW 138T>C Val46Val
M0068271 PFGKAFMA_00019 15430 4 Skin 0.15 protein_coding synonymous_variant LOW 117A>C Gly39Gly
M0068272 PFGKAFMA_00019 15431 4 Skin 0.15 protein_coding missense_variant MODERATE 116G>A Gly39Glu
M0068273 PFGKAFMA_00019 15522 4 Skin 0.15 protein_coding missense_variant MODERATE 25T>C Tyr9His
M0068274 PFGKAFMA_00021 17181 5 Skin 0.19 protein_coding synonymous_variant LOW 339C>T Arg113Arg
M0068275 PFGKAFMA_00022 17590 5 Skin 0.19 protein_coding synonymous_variant LOW 954T>C Ala318Ala
M0068276 PFGKAFMA_00022 17803 5 Skin 0.19 protein_coding synonymous_variant LOW 741T>C Arg247Arg
M0068277 PFGKAFMA_00022 17824 5 Skin 0.19 protein_coding synonymous_variant LOW 720T>C Gly240Gly
M0068278 PFGKAFMA_00022 17896 5 Skin 0.19 protein_coding synonymous_variant LOW 648A>G Thr216Thr
M0068279 PFGKAFMA_00023 18632 5 Skin 0.19 protein_coding synonymous_variant LOW 897A>G Ala299Ala
M0068280 PFGKAFMA_00023 18710 5 Skin 0.19 protein_coding synonymous_variant LOW 819T>G Arg273Arg
M0068281 PFGKAFMA_00023 18863 5 Skin 0.19 protein_coding synonymous_variant LOW 666A>C Leu222Leu
M0068282 PFGKAFMA_00023 19039 4 Skin 0.15 protein_coding missense_variant MODERATE 490A>G Arg164Gly
M0068283 PFGKAFMA_00024 19969 3 Skin 0.12 protein_coding missense_variant MODERATE 793G>A Ala265Thr
M0068284 PFGKAFMA_00024 20030 4 Skin 0.15 protein_coding synonymous_variant LOW 732A>G Glu244Glu
M0068285 PFGKAFMA_00024 20198 5 Skin 0.19 protein_coding synonymous_variant LOW 564G>C Thr188Thr
M0068286 PFGKAFMA_00024 20201 5 Skin 0.19 protein_coding synonymous_variant LOW 561C>T Ile187Ile
M0068287 PFGKAFMA_00024 20702 5 Skin 0.19 protein_coding synonymous_variant LOW 60A>G Leu20Leu
M0068288 PFGKAFMA_00025 21162 5 Skin 0.19 protein_coding synonymous_variant LOW 747C>T Gly249Gly
M0068289 PFGKAFMA_00025 21825 3 Skin 0.12 protein_coding synonymous_variant LOW 84G>A Ala28Ala
M0068290 PFGKAFMA_00025 21888 5 Skin 0.19 protein_coding synonymous_variant LOW 21T>C Gly7Gly
M0068291 PFGKAFMA_00026 21971 5 Skin 0.19 protein_coding synonymous_variant LOW 330A>G Pro110Pro
M0068292 PFGKAFMA_00021 22422 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4903C>A None
M0068293 PFGKAFMA_00027 22673 5 Skin 0.19 protein_coding missense_variant MODERATE 524C>T Ala175Val
M0068294 PFGKAFMA_00027 22696 5 Skin 0.19 protein_coding synonymous_variant LOW 501A>C Gly167Gly
M0068295 PFGKAFMA_00027 22899 3 Skin 0.12 protein_coding missense_variant MODERATE 298G>C Glu100Gln
M0068296 PFGKAFMA_00028 23959 3 Skin 0.12 protein_coding synonymous_variant LOW 642T>C Gly214Gly
M0068297 PFGKAFMA_00028 24103 3 Skin 0.12 protein_coding synonymous_variant LOW 786G>A Thr262Thr
M0068298 PFGKAFMA_00028 24106 5 Skin 0.19 protein_coding synonymous_variant LOW 789T>C Arg263Arg
M0068299 PFGKAFMA_00028 24217 3 Skin 0.12 protein_coding synonymous_variant LOW 900G>A Ser300Ser
M0068300 PFGKAFMA_00028 24222 5 Skin 0.19 protein_coding missense_variant MODERATE 905A>G Asp302Gly
M0068301 PFGKAFMA_00028 24225 4 Skin 0.15 protein_coding missense_variant MODERATE 908G>A Arg303Lys
M0068302 PFGKAFMA_00028 24229 3 Skin 0.12 protein_coding synonymous_variant LOW 912A>T Pro304Pro
M0068303 PFGKAFMA_00029 24495 3 Skin 0.12 protein_coding missense_variant MODERATE 720C>A His240Gln
M0068304 PFGKAFMA_00029 24651 5 Skin 0.19 protein_coding synonymous_variant LOW 564C>G Ala188Ala
M0068305 PFGKAFMA_00029 24681 5 Skin 0.19 protein_coding synonymous_variant LOW 534G>A Glu178Glu
M0068306 PFGKAFMA_00030 25224 3 Skin 0.12 protein_coding missense_variant MODERATE 1397C>A Thr466Asn
M0068307 PFGKAFMA_00030 25226 3 Skin 0.12 protein_coding synonymous_variant LOW 1395T>C Gly465Gly
M0068308 PFGKAFMA_00030 25299 3 Skin 0.12 protein_coding missense_variant MODERATE 1322C>A Thr441Lys
M0068309 PFGKAFMA_00030 25373 3 Skin 0.12 protein_coding synonymous_variant LOW 1248C>T Leu416Leu
M0068310 PFGKAFMA_00030 25427 4 Skin 0.15 protein_coding synonymous_variant LOW 1194C>A Leu398Leu
M0068311 PFGKAFMA_00030 25696 5 Skin 0.19 protein_coding missense_variant MODERATE 925A>G Asn309Asp
M0068312 PFGKAFMA_00030 25904 4 Skin 0.15 protein_coding synonymous_variant LOW 717G>A Gln239Gln
M0068313 PFGKAFMA_00030 26081 5 Skin 0.19 protein_coding synonymous_variant LOW 540A>G Glu180Glu
M0068314 PFGKAFMA_00030 26411 4 Skin 0.15 protein_coding synonymous_variant LOW 210G>C Val70Val
M0068315 PFGKAFMA_00030 26465 5 Skin 0.19 protein_coding synonymous_variant LOW 156C>T Arg52Arg
M0068316 PFGKAFMA_00030 26534 4 Skin 0.15 protein_coding synonymous_variant LOW 87G>T Arg29Arg
M0068317 PFGKAFMA_00031 26943 5 Skin 0.19 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0068318 PFGKAFMA_00031 27024 4 Skin 0.15 protein_coding synonymous_variant LOW 267C>T Ile89Ile
M0068319 PFGKAFMA_00031 27084 3 Skin 0.12 protein_coding synonymous_variant LOW 327G>T Ala109Ala
M0068320 PFGKAFMA_00031 27120 3 Skin 0.12 protein_coding synonymous_variant LOW 363T>C His121His
M0068321 PFGKAFMA_00031 27169 5 Skin 0.19 protein_coding missense_variant MODERATE 412A>G Ile138Val
M0068322 PFGKAFMA_00031 27363 5 Skin 0.19 protein_coding synonymous_variant LOW 606A>G Gln202Gln
M0068323 PFGKAFMA_00032 27551 4 Skin 0.15 protein_coding synonymous_variant LOW 15T>A Leu5Leu
M0068324 PFGKAFMA_00032 27560 4 Skin 0.15 protein_coding synonymous_variant LOW 24A>G Ala8Ala
M0068325 PFGKAFMA_00032 27578 4 Skin 0.15 protein_coding synonymous_variant LOW 42G>C Gly14Gly
M0068326 PFGKAFMA_00032 27584 4 Skin 0.15 protein_coding synonymous_variant LOW 48G>A Ala16Ala
M0068327 PFGKAFMA_00032 27596 4 Skin 0.15 protein_coding synonymous_variant LOW 60C>T Gly20Gly
M0068328 PFGKAFMA_00032 27603 4 Skin 0.15 protein_coding missense_variant MODERATE 67G>A Val23Met
M0068329 PFGKAFMA_00032 27605 4 Skin 0.15 protein_coding synonymous_variant LOW 69G>T Val23Val
M0068330 PFGKAFMA_00032 27656 4 Skin 0.15 protein_coding synonymous_variant LOW 120C>T Asp40Asp
M0068331 PFGKAFMA_00009 6592 4 Skin 0.15 protein_coding missense_variant MODERATE 341C>T Ala114Val
M0068332 PFGKAFMA_00009 6633 4 Skin 0.15 protein_coding synonymous_variant LOW 300A>G Ala100Ala
M0068333 PFGKAFMA_00009 6812 4 Skin 0.15 protein_coding missense_variant MODERATE 121C>A Gln41Lys
M0068334 PFGKAFMA_00002 6983 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4616T>C None
M0068335 PFGKAFMA_00010 7157 3 Skin 0.12 protein_coding missense_variant MODERATE 96G>C Glu32Asp
M0068336 PFGKAFMA_00010 7165 3 Skin 0.12 protein_coding missense_variant MODERATE 104C>G Ala35Gly
M0068337 PFGKAFMA_00010 7168 3 Skin 0.12 protein_coding missense_variant MODERATE 107A>G Gln36Arg
M0068338 PFGKAFMA_00010 7175 3 Skin 0.12 protein_coding synonymous_variant LOW 114C>A Gly38Gly
M0068339 PFGKAFMA_00010 7295 3 Skin 0.12 protein_coding synonymous_variant LOW 234A>G Ala78Ala
M0068340 PFGKAFMA_00010 7393 3 Skin 0.12 protein_coding missense_variant MODERATE 332C>T Ala111Val
M0068341 PFGKAFMA_00010 7523 3 Skin 0.12 protein_coding synonymous_variant LOW 462C>T Asp154Asp
M0068342 PFGKAFMA_00010 7888 3 Skin 0.12 protein_coding missense_variant MODERATE 827C>T Ala276Val
M0068343 PFGKAFMA_00026 22283 3 Skin 0.12 protein_coding missense_variant MODERATE 18G>T Glu6Asp
M0068344 PFGKAFMA_00032 27737 3 Skin 0.12 protein_coding missense_variant MODERATE 201C>A Asp67Glu
M0068345 PFGKAFMA_00032 27742 3 Skin 0.12 protein_coding missense_variant MODERATE 206C>G Ala69Gly
M0068346 PFGKAFMA_00032 27746 3 Skin 0.12 protein_coding synonymous_variant LOW 210T>C Asp70Asp
M0068347 PFGKAFMA_00032 27750 3 Skin 0.12 protein_coding missense_variant MODERATE 214G>T Ala72Ser
M0068348 PFGKAFMA_00032 27752 3 Skin 0.12 protein_coding synonymous_variant LOW 216A>G Ala72Ala
M0068349 PFGKAFMA_00032 27758 3 Skin 0.12 protein_coding synonymous_variant LOW 222T>C Leu74Leu
M0068350 PFGKAFMA_00032 27764 3 Skin 0.12 protein_coding synonymous_variant LOW 228C>A Arg76Arg
M0068351 PFGKAFMA_00032 27770 4 Skin 0.15 protein_coding synonymous_variant LOW 234T>C Val78Val
M0068352 PFGKAFMA_00032 27785 3 Skin 0.12 protein_coding synonymous_variant LOW 249C>T Gly83Gly
M0068353 PFGKAFMA_00032 27786 3 Skin 0.12 protein_coding synonymous_variant LOW 250A>C Arg84Arg
M0068354 PFGKAFMA_00032 27788 3 Skin 0.12 protein_coding missense_variant MODERATE 252G>C Arg84Ser
M0068355 PFGKAFMA_00032 27803 3 Skin 0.12 protein_coding synonymous_variant LOW 267C>T Val89Val
M0068356 PFGKAFMA_00032 27840 3 Skin 0.12 protein_coding missense_variant MODERATE 304A>G Ser102Gly
M0068357 PFGKAFMA_00032 27842 3 Skin 0.12 protein_coding missense_variant MODERATE 306C>G Ser102Arg
M0068358 PFGKAFMA_00032 27863 3 Skin 0.12 protein_coding synonymous_variant LOW 327C>G Arg109Arg
M0068359 PFGKAFMA_00032 27866 3 Skin 0.12 protein_coding synonymous_variant LOW 330G>T Arg110Arg
M0068360 PFGKAFMA_00032 27905 4 Skin 0.15 protein_coding synonymous_variant LOW 369T>C Thr123Thr
M0068361 PFGKAFMA_00032 28064 3 Skin 0.12 protein_coding synonymous_variant LOW 528T>C Ala176Ala
M0068362 PFGKAFMA_00033 28364 5 Skin 0.19 protein_coding missense_variant MODERATE 8G>A Arg3Gln
M0068363 PFGKAFMA_00033 28488 5 Skin 0.19 protein_coding synonymous_variant LOW 132G>T Val44Val
M0068364 PFGKAFMA_00033 28791 5 Skin 0.19 protein_coding synonymous_variant LOW 435T>G Ala145Ala
M0068365 PFGKAFMA_00033 28881 4 Skin 0.15 protein_coding synonymous_variant LOW 525T>C Asn175Asn
M0068366 PFGKAFMA_00034 29579 5 Skin 0.19 protein_coding missense_variant MODERATE 19T>C Cys7Arg
M0068367 PFGKAFMA_00035 29701 5 Skin 0.19 protein_coding missense_variant MODERATE 1240G>T Ala414Ser
M0068368 PFGKAFMA_00035 29753 5 Skin 0.19 protein_coding synonymous_variant LOW 1188A>G Gln396Gln
M0068369 PFGKAFMA_00035 30515 5 Skin 0.19 protein_coding synonymous_variant LOW 426T>C Ala142Ala
M0068370 PFGKAFMA_00035 30608 5 Skin 0.19 protein_coding synonymous_variant LOW 333T>C His111His
M0068371 PFGKAFMA_00035 30745 5 Skin 0.19 protein_coding missense_variant MODERATE 196A>T Ile66Phe
M0068372 PFGKAFMA_00030 30941 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4321A>C None
M0068373 PFGKAFMA_00036 31178 4 Skin 0.15 protein_coding synonymous_variant LOW 279G>A Ala93Ala
M0068374 PFGKAFMA_00036 31199 4 Skin 0.15 protein_coding synonymous_variant LOW 258C>G Thr86Thr
M0068375 PFGKAFMA_00036 31298 3 Skin 0.12 protein_coding synonymous_variant LOW 159G>A Ala53Ala
M0068376 PFGKAFMA_00036 31412 4 Skin 0.15 protein_coding synonymous_variant LOW 45C>T Asp15Asp
M0068377 PFGKAFMA_00036 31436 3 Skin 0.12 protein_coding synonymous_variant LOW 21T>C Leu7Leu
M0068378 PFGKAFMA_00037 31624 4 Skin 0.15 protein_coding synonymous_variant LOW 1041C>G Pro347Pro
M0068379 PFGKAFMA_00037 31639 4 Skin 0.15 protein_coding synonymous_variant LOW 1026G>T Thr342Thr
M0068380 PFGKAFMA_00037 31652 4 Skin 0.15 protein_coding missense_variant MODERATE 1013G>C Gly338Ala
M0068381 PFGKAFMA_00037 31675 4 Skin 0.15 protein_coding synonymous_variant LOW 990T>C Arg330Arg
M0068382 PFGKAFMA_00037 31777 4 Skin 0.15 protein_coding synonymous_variant LOW 888T>C Ser296Ser
M0068383 PFGKAFMA_00037 32021 4 Skin 0.15 protein_coding missense_variant MODERATE 644G>A Ser215Asn
M0068384 PFGKAFMA_00037 32077 4 Skin 0.15 protein_coding synonymous_variant LOW 588C>T Tyr196Tyr
M0068385 PFGKAFMA_00037 32125 4 Skin 0.15 protein_coding synonymous_variant LOW 540T>C Pro180Pro
M0068386 PFGKAFMA_00037 32175 4 Skin 0.15 protein_coding missense_variant MODERATE 490T>G Ser164Ala
M0068387 PFGKAFMA_00037 32386 4 Skin 0.15 protein_coding synonymous_variant LOW 279A>C Pro93Pro
M0068388 PFGKAFMA_00038 32920 4 Skin 0.15 protein_coding synonymous_variant LOW 78T>C Gly26Gly
M0068389 PFGKAFMA_00038 33002 4 Skin 0.15 protein_coding missense_variant MODERATE 160A>G Thr54Ala
M0068390 PFGKAFMA_00039 34225 4 Skin 0.15 protein_coding missense_variant MODERATE 25A>G Thr9Ala
M0068391 PFGKAFMA_00039 34557 4 Skin 0.15 protein_coding synonymous_variant LOW 357T>G Leu119Leu
M0068392 PFGKAFMA_00039 34923 4 Skin 0.15 protein_coding missense_variant MODERATE 723G>T Glu241Asp
M0068393 PFGKAFMA_00039 34965 4 Skin 0.15 protein_coding synonymous_variant LOW 765G>A Gln255Gln
M0068394 PFGKAFMA_00039 35018 4 Skin 0.15 protein_coding missense_variant MODERATE 818T>C Val273Ala
M0068395 PFGKAFMA_00039 35089 4 Skin 0.15 protein_coding synonymous_variant LOW 889T>C Leu297Leu
M0068396 PFGKAFMA_00039 35239 4 Skin 0.15 protein_coding missense_variant MODERATE 1039T>C Phe347Leu
M0068397 PFGKAFMA_00039 35338 4 Skin 0.15 protein_coding missense_variant MODERATE 1138A>T Met380Leu
M0068398 PFGKAFMA_00035 35419 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4479C>T None
M0068399 PFGKAFMA_00040 35479 4 Skin 0.15 protein_coding synonymous_variant LOW 18G>A Arg6Arg
M0068400 PFGKAFMA_00040 35887 4 Skin 0.15 protein_coding synonymous_variant LOW 426A>G Gly142Gly
M0068401 PFGKAFMA_00040 36142 4 Skin 0.15 protein_coding synonymous_variant LOW 681G>A Pro227Pro
M0068402 PFGKAFMA_00041 37006 4 Skin 0.15 protein_coding synonymous_variant LOW 750A>G Ala250Ala
M0068403 PFGKAFMA_00042 37363 4 Skin 0.15 protein_coding synonymous_variant LOW 336A>G Leu112Leu
M0068404 PFGKAFMA_00042 37680 5 Skin 0.19 protein_coding missense_variant MODERATE 653T>C Leu218Pro
M0068405 PFGKAFMA_00041 36915 3 Skin 0.12 protein_coding missense_variant MODERATE 659A>C Asp220Ala
M0068406 PFGKAFMA_00043 37900 3 Skin 0.12 protein_coding synonymous_variant LOW 198G>A Ser66Ser
M0068407 PFGKAFMA_00044 38381 5 Skin 0.19 protein_coding synonymous_variant LOW 132G>C Val44Val
M0068408 PFGKAFMA_00045 38773 3 Skin 0.12 protein_coding synonymous_variant LOW 927T>C Asn309Asn
M0068409 PFGKAFMA_00045 39424 4 Skin 0.15 protein_coding synonymous_variant LOW 276A>G Thr92Thr
M0068410 PFGKAFMA_00045 39546 4 Skin 0.15 protein_coding synonymous_variant LOW 154T>C Leu52Leu
M0068411 PFGKAFMA_00044 39711 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1199G>A None
M0068412 PFGKAFMA_00046 40340 3 Skin 0.12 protein_coding synonymous_variant LOW 519C>A Val173Val
M0068413 PFGKAFMA_00046 40823 3 Skin 0.12 protein_coding synonymous_variant LOW 1002G>C Ala334Ala
M0068414 PFGKAFMA_00046 40931 3 Skin 0.12 protein_coding synonymous_variant LOW 1110T>C Asp370Asp
M0068415 PFGKAFMA_00046 40959 3 Skin 0.12 protein_coding missense_variant MODERATE 1138G>A Asp380Asn
M0068416 PFGKAFMA_00046 41078 3 Skin 0.12 protein_coding synonymous_variant LOW 1257A>C Arg419Arg
M0068417 PFGKAFMA_00046 41348 3 Skin 0.12 protein_coding synonymous_variant LOW 1527G>A Gln509Gln
M0068418 PFGKAFMA_00047 41470 3 Skin 0.12 protein_coding missense_variant MODERATE 793G>A Ala265Thr
M0068419 PFGKAFMA_00047 41720 3 Skin 0.12 protein_coding synonymous_variant LOW 543C>T Asn181Asn
M0068420 PFGKAFMA_00044 42291 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3779G>C None
M0068421 PFGKAFMA_00044 42316 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3804C>T None
M0068422 PFGKAFMA_00048 42496 3 Skin 0.12 protein_coding missense_variant MODERATE 100G>A Val34Ile
M0068423 PFGKAFMA_00049 43290 3 Skin 0.12 protein_coding synonymous_variant LOW 876A>G Ala292Ala
M0068424 PFGKAFMA_00049 43464 3 Skin 0.12 protein_coding synonymous_variant LOW 702C>A Ala234Ala
M0068425 PFGKAFMA_00050 44594 3 Skin 0.12 protein_coding synonymous_variant LOW 588C>T Asp196Asp
M0068426 PFGKAFMA_00050 44603 3 Skin 0.12 protein_coding synonymous_variant LOW 579A>C Gly193Gly
M0068427 PFGKAFMA_00050 44606 3 Skin 0.12 protein_coding synonymous_variant LOW 576T>C Asn192Asn
M0068428 PFGKAFMA_00050 44614 3 Skin 0.12 protein_coding missense_variant MODERATE 568G>C Val190Leu
M0068429 PFGKAFMA_00050 44624 3 Skin 0.12 protein_coding synonymous_variant LOW 558C>T Cys186Cys
M0068430 PFGKAFMA_00050 44636 3 Skin 0.12 protein_coding synonymous_variant LOW 546A>G Gly182Gly
M0068431 PFGKAFMA_00050 44639 3 Skin 0.12 protein_coding synonymous_variant LOW 543C>G Gly181Gly
M0068432 PFGKAFMA_00050 44645 3 Skin 0.12 protein_coding synonymous_variant LOW 537C>T Ile179Ile
M0068433 PFGKAFMA_00050 44672 3 Skin 0.12 protein_coding synonymous_variant LOW 510T>C Leu170Leu
M0068434 PFGKAFMA_00050 44673 3 Skin 0.12 protein_coding missense_variant MODERATE 509T>G Leu170Arg
M0068435 PFGKAFMA_00050 45158 3 Skin 0.12 protein_coding synonymous_variant LOW 24A>G Arg8Arg
M0068436 PFGKAFMA_00051 46452 3 Skin 0.12 protein_coding missense_variant MODERATE 1095G>C Met365Ile
M0068437 PFGKAFMA_00051 46625 3 Skin 0.12 protein_coding missense_variant MODERATE 1268C>A Ala423Asp
M0068438 PFGKAFMA_00052 48079 5 Skin 0.19 protein_coding missense_variant MODERATE 254A>C Asp85Ala
M0068439 PFGKAFMA_00052 48083 5 Skin 0.19 protein_coding missense_variant MODERATE 250A>G Ile84Val
M0068440 PFGKAFMA_00052 48093 5 Skin 0.19 protein_coding synonymous_variant LOW 240T>C Gly80Gly
M0068441 PFGKAFMA_00052 48120 5 Skin 0.19 protein_coding synonymous_variant LOW 213G>C Pro71Pro
M0068442 PFGKAFMA_00052 48150 5 Skin 0.19 protein_coding synonymous_variant LOW 183G>C Ala61Ala
M0068443 PFGKAFMA_00052 48186 5 Skin 0.19 protein_coding synonymous_variant LOW 147A>G Glu49Glu
M0068444 PFGKAFMA_00052 48195 5 Skin 0.19 protein_coding synonymous_variant LOW 138T>C Asp46Asp
M0068445 PFGKAFMA_00052 48201 5 Skin 0.19 protein_coding synonymous_variant LOW 132T>G Leu44Leu
M0068446 PFGKAFMA_00052 48219 5 Skin 0.19 protein_coding missense_variant MODERATE 114C>A Asp38Glu
M0068447 PFGKAFMA_00052 48240 5 Skin 0.19 protein_coding synonymous_variant LOW 93T>C Ala31Ala
M0068448 PFGKAFMA_00052 48258 5 Skin 0.19 protein_coding synonymous_variant LOW 75T>C Thr25Thr
M0068449 PFGKAFMA_00053 48706 5 Skin 0.19 protein_coding missense_variant MODERATE 73A>G Ser25Gly
M0068450 PFGKAFMA_00049 48786 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4621T>C None
M0068451 PFGKAFMA_00048 42903 3 Skin 0.12 protein_coding synonymous_variant LOW 507T>C Leu169Leu
M0068452 PFGKAFMA_00051 47422 4 Skin 0.15 protein_coding missense_variant MODERATE 2065T>G Ser689Ala
M0068453 PFGKAFMA_00036 30992 3 Skin 0.12 protein_coding synonymous_variant LOW 465T>C Gly155Gly
M0068454 PFGKAFMA_00033 28974 3 Skin 0.12 protein_coding synonymous_variant LOW 618G>T Ser206Ser
M0068455 PFGKAFMA_00051 46956 3 Skin 0.12 protein_coding synonymous_variant LOW 1599C>T Ala533Ala
M0068456 PFGKAFMA_00051 47559 3 Skin 0.12 protein_coding synonymous_variant LOW 2202C>T Val734Val
M0068457 PFGKAFMA_00049 47885 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3720C>T None
M0068458 PFGKAFMA_00052 47976 3 Skin 0.12 protein_coding missense_variant MODERATE 357G>C Met119Ile
M0068459 PFGKAFMA_00052 47982 3 Skin 0.12 protein_coding synonymous_variant LOW 351C>G Val117Val
M0068460 PFGKAFMA_00052 48002 3 Skin 0.12 protein_coding missense_variant MODERATE 331G>C Val111Leu
M0068461 PFGKAFMA_00052 48006 3 Skin 0.12 protein_coding synonymous_variant LOW 327A>C Arg109Arg
M0068462 PFGKAFMA_00052 48018 3 Skin 0.12 protein_coding synonymous_variant LOW 315A>C Thr105Thr
M0068463 PFGKAFMA_00052 48033 3 Skin 0.12 protein_coding synonymous_variant LOW 300C>T Asp100Asp
M0068464 PFGKAFMA_00052 48039 3 Skin 0.12 protein_coding synonymous_variant LOW 294A>C Val98Val
M0068465 PFGKAFMA_00052 48042 3 Skin 0.12 protein_coding synonymous_variant LOW 291G>A Glu97Glu
M0068466 PFGKAFMA_00052 48048 3 Skin 0.12 protein_coding synonymous_variant LOW 285C>T Thr95Thr
M0068467 PFGKAFMA_00052 48062 3 Skin 0.12 protein_coding missense_variant MODERATE 271G>A Val91Met
M0068468 PFGKAFMA_00052 48069 3 Skin 0.12 protein_coding synonymous_variant LOW 264C>A Arg88Arg
M0068469 PFGKAFMA_00052 48072 3 Skin 0.12 protein_coding synonymous_variant LOW 261T>C Asp87Asp
M0068470 PFGKAFMA_00052 48278 3 Skin 0.12 protein_coding missense_variant MODERATE 55G>A Ala19Thr
M0068471 PFGKAFMA_00049 48359 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4194A>C None
M0068472 PFGKAFMA_00049 48416 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4251A>T None
M0068473 PFGKAFMA_00049 48906 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4741C>G None
M0068474 PFGKAFMA_00054 48952 3 Skin 0.12 protein_coding synonymous_variant LOW 45C>A Ala15Ala
M0068475 PFGKAFMA_00054 49132 3 Skin 0.12 protein_coding synonymous_variant LOW 225G>A Val75Val
M0068476 PFGKAFMA_00054 49135 3 Skin 0.12 protein_coding synonymous_variant LOW 228C>G Val76Val
M0068477 PFGKAFMA_00054 49195 3 Skin 0.12 protein_coding synonymous_variant LOW 288A>G Pro96Pro
M0068478 PFGKAFMA_00055 49371 3 Skin 0.12 protein_coding synonymous_variant LOW 57G>C Gly19Gly
M0068479 PFGKAFMA_00055 49404 3 Skin 0.12 protein_coding synonymous_variant LOW 90C>T Arg30Arg
M0068480 PFGKAFMA_00055 49818 4 Skin 0.15 protein_coding synonymous_variant LOW 504G>C Gly168Gly
M0068481 PFGKAFMA_00055 49900 3 Skin 0.12 protein_coding missense_variant MODERATE 586A>G Ile196Val
M0068482 PFGKAFMA_00055 50337 3 Skin 0.12 protein_coding synonymous_variant LOW 1023T>C Gly341Gly
M0068483 PFGKAFMA_00055 50340 3 Skin 0.12 protein_coding synonymous_variant LOW 1026C>T Gly342Gly
M0068484 PFGKAFMA_00055 50343 3 Skin 0.12 protein_coding synonymous_variant LOW 1029C>T Thr343Thr
M0068485 PFGKAFMA_00055 50358 3 Skin 0.12 protein_coding synonymous_variant LOW 1044G>A Ala348Ala
M0068486 PFGKAFMA_00055 50364 3 Skin 0.12 protein_coding synonymous_variant LOW 1050C>T Val350Val
M0068487 PFGKAFMA_00055 50391 3 Skin 0.12 protein_coding synonymous_variant LOW 1077T>A Arg359Arg
M0068488 PFGKAFMA_00055 50439 3 Skin 0.12 protein_coding synonymous_variant LOW 1125T>C Leu375Leu
M0068489 PFGKAFMA_00037 31759 3 Skin 0.12 protein_coding synonymous_variant LOW 906C>T Gly302Gly
M0068490 PFGKAFMA_00037 31774 3 Skin 0.12 protein_coding synonymous_variant LOW 891T>C Asp297Asp
M0068491 PFGKAFMA_00037 32005 3 Skin 0.12 protein_coding missense_variant MODERATE 660T>A Asp220Glu
M0068492 PFGKAFMA_00037 32220 3 Skin 0.12 protein_coding missense_variant MODERATE 445C>A Arg149Ser
M0068493 PFGKAFMA_00038 33580 3 Skin 0.12 protein_coding synonymous_variant LOW 738G>A Arg246Arg
M0068494 PFGKAFMA_00038 33885 3 Skin 0.12 protein_coding missense_variant MODERATE 1043A>G Lys348Arg
M0068495 PFGKAFMA_00038 34120 3 Skin 0.12 protein_coding synonymous_variant LOW 1278A>C Ser426Ser
M0068496 PFGKAFMA_00038 34172 3 Skin 0.12 protein_coding missense_variant MODERATE 1330G>A Ala444Thr
M0068497 PFGKAFMA_00038 34174 3 Skin 0.12 protein_coding synonymous_variant LOW 1332C>T Ala444Ala
M0068498 PFGKAFMA_00039 34235 3 Skin 0.12 protein_coding missense_variant MODERATE 35T>C Met12Thr
M0068499 PFGKAFMA_00039 34237 3 Skin 0.12 protein_coding missense_variant MODERATE 37C>T Pro13Ser
M0068500 PFGKAFMA_00039 34497 3 Skin 0.12 protein_coding synonymous_variant LOW 297A>G Ala99Ala
M0068501 PFGKAFMA_00039 34642 3 Skin 0.12 protein_coding missense_variant MODERATE 442G>A Val148Ile
M0068502 PFGKAFMA_00039 34689 3 Skin 0.12 protein_coding synonymous_variant LOW 489G>T Gly163Gly
M0068503 PFGKAFMA_00039 34760 3 Skin 0.12 protein_coding missense_variant MODERATE 560G>A Arg187Gln
M0068504 PFGKAFMA_00039 35048 3 Skin 0.12 protein_coding missense_variant MODERATE 848C>G Ala283Gly
M0068505 PFGKAFMA_00039 35050 3 Skin 0.12 protein_coding missense_variant MODERATE 850A>G Ile284Val
M0068506 PFGKAFMA_00039 35260 3 Skin 0.12 protein_coding missense_variant MODERATE 1060C>T Pro354Ser
M0068507 PFGKAFMA_00039 35385 3 Skin 0.12 protein_coding synonymous_variant LOW 1185G>T Ala395Ala
M0068508 PFGKAFMA_00035 35407 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4467G>T None
M0068509 PFGKAFMA_00040 35536 3 Skin 0.12 protein_coding synonymous_variant LOW 75A>G Glu25Glu
M0068510 PFGKAFMA_00040 35566 3 Skin 0.12 protein_coding synonymous_variant LOW 105C>T Gly35Gly
M0068511 PFGKAFMA_00040 35594 3 Skin 0.12 protein_coding missense_variant MODERATE 133T>G Ser45Ala
M0068512 PFGKAFMA_00040 35607 3 Skin 0.12 protein_coding missense_variant MODERATE 146A>C His49Pro
M0068513 PFGKAFMA_00040 35623 3 Skin 0.12 protein_coding synonymous_variant LOW 162A>G Arg54Arg
M0068514 PFGKAFMA_00040 35635 3 Skin 0.12 protein_coding missense_variant MODERATE 174A>C Gln58His
M0068515 PFGKAFMA_00040 35653 3 Skin 0.12 protein_coding synonymous_variant LOW 192T>C Phe64Phe
M0068516 PFGKAFMA_00041 36373 3 Skin 0.12 protein_coding synonymous_variant LOW 117C>T Asp39Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term