Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2962
  Reference Plasmid   DS1912041108-1_bin.5__k141_10347
  Reference Plasmid Size   31687
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0068555 GOICGPIJ_00016 19526 3 Skin 0.23 protein_coding synonymous_variant LOW 30T>G Val10Val
M0068556 GOICGPIJ_00016 19529 3 Skin 0.23 protein_coding synonymous_variant LOW 27C>T Arg9Arg
M0068557 GOICGPIJ_00002 2174 5 Skin 0.38 protein_coding synonymous_variant LOW 1587T>C Gly529Gly
M0068558 GOICGPIJ_00002 2540 5 Skin 0.38 protein_coding synonymous_variant LOW 1221C>G Arg407Arg
M0068559 GOICGPIJ_00002 2570 5 Skin 0.38 protein_coding synonymous_variant LOW 1191T>C Asn397Asn
M0068560 GOICGPIJ_00002 2672 3 Skin 0.23 protein_coding missense_variant MODERATE 1089G>C Glu363Asp
M0068561 GOICGPIJ_00002 2945 4 Skin 0.31 protein_coding synonymous_variant LOW 816T>C Gly272Gly
M0068562 GOICGPIJ_00002 3008 5 Skin 0.38 protein_coding synonymous_variant LOW 753G>A Gly251Gly
M0068563 GOICGPIJ_00002 3014 5 Skin 0.38 protein_coding synonymous_variant LOW 747A>G Pro249Pro
M0068564 GOICGPIJ_00002 3062 4 Skin 0.31 protein_coding synonymous_variant LOW 699C>G Arg233Arg
M0068565 GOICGPIJ_00002 3080 4 Skin 0.31 protein_coding synonymous_variant LOW 681C>G Thr227Thr
M0068566 GOICGPIJ_00002 3121 4 Skin 0.31 protein_coding missense_variant MODERATE 640G>A Val214Ile
M0068567 GOICGPIJ_00002 3164 5 Skin 0.38 protein_coding synonymous_variant LOW 597G>A Glu199Glu
M0068568 GOICGPIJ_00002 3548 5 Skin 0.38 protein_coding synonymous_variant LOW 213C>T Leu71Leu
M0068569 GOICGPIJ_00002 3572 5 Skin 0.38 protein_coding missense_variant MODERATE 189A>T Glu63Asp
M0068570 GOICGPIJ_00002 3638 5 Skin 0.38 protein_coding synonymous_variant LOW 123C>T Ala41Ala
M0068571 GOICGPIJ_00002 3645 5 Skin 0.38 protein_coding missense_variant MODERATE 116T>C Met39Thr
M0068572 GOICGPIJ_00002 3646 5 Skin 0.38 protein_coding missense_variant MODERATE 115A>G Met39Val
M0068573 GOICGPIJ_00002 3647 5 Skin 0.38 protein_coding synonymous_variant LOW 114C>A Pro38Pro
M0068574 GOICGPIJ_00002 3665 5 Skin 0.38 protein_coding missense_variant MODERATE 96T>G Phe32Leu
M0068575 GOICGPIJ_00002 3697 5 Skin 0.38 protein_coding missense_variant MODERATE 64G>C Val22Leu
M0068576 GOICGPIJ_00002 3842 5 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -82C>T None
M0068577 GOICGPIJ_00002 3863 5 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -103T>G None
M0068578 GOICGPIJ_00003 3883 5 Skin 0.38 protein_coding missense_variant MODERATE 1019G>T Arg340Met
M0068579 GOICGPIJ_00003 3953 4 Skin 0.31 protein_coding missense_variant MODERATE 949A>G Thr317Ala
M0068580 GOICGPIJ_00003 3971 4 Skin 0.31 protein_coding missense_variant MODERATE 931G>T Ala311Ser
M0068581 GOICGPIJ_00003 3987 4 Skin 0.31 protein_coding synonymous_variant LOW 915G>C Leu305Leu
M0068582 GOICGPIJ_00003 4218 4 Skin 0.31 protein_coding synonymous_variant LOW 684G>C Leu228Leu
M0068583 GOICGPIJ_00003 4225 4 Skin 0.31 protein_coding missense_variant MODERATE 677A>G Asp226Gly
M0068584 GOICGPIJ_00003 4240 4 Skin 0.31 protein_coding missense_variant MODERATE 662A>G Asp221Gly
M0068585 GOICGPIJ_00003 4248 4 Skin 0.31 protein_coding synonymous_variant LOW 654G>A Arg218Arg
M0068586 GOICGPIJ_00004 5325 5 Skin 0.38 protein_coding missense_variant MODERATE 89G>A Gly30Asp
M0068587 GOICGPIJ_00002 5504 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -1744T>A None
M0068588 GOICGPIJ_00002 5505 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -1745A>C None
M0068589 GOICGPIJ_00005 6058 6 Skin 0.46 protein_coding synonymous_variant LOW 415T>C Leu139Leu
M0068590 GOICGPIJ_00006 7400 4 Skin 0.31 protein_coding synonymous_variant LOW 780T>G Leu260Leu
M0068591 GOICGPIJ_00006 7409 4 Skin 0.31 protein_coding synonymous_variant LOW 789T>C Ser263Ser
M0068592 GOICGPIJ_00006 7422 4 Skin 0.31 protein_coding missense_variant MODERATE 802A>G Ser268Gly
M0068593 GOICGPIJ_00006 7613 3 Skin 0.23 protein_coding synonymous_variant LOW 993C>T Gly331Gly
M0068594 GOICGPIJ_00006 7619 3 Skin 0.23 protein_coding synonymous_variant LOW 999T>G Gly333Gly
M0068595 GOICGPIJ_00007 8619 3 Skin 0.23 protein_coding synonymous_variant LOW 954C>T Gly318Gly
M0068596 GOICGPIJ_00007 8691 3 Skin 0.23 protein_coding synonymous_variant LOW 1026C>T Asp342Asp
M0068597 GOICGPIJ_00007 8697 3 Skin 0.23 protein_coding synonymous_variant LOW 1032G>T Pro344Pro
M0068598 GOICGPIJ_00008 9212 3 Skin 0.23 protein_coding synonymous_variant LOW 150T>C Arg50Arg
M0068599 GOICGPIJ_00008 9233 3 Skin 0.23 protein_coding synonymous_variant LOW 171T>C Asn57Asn
M0068600 GOICGPIJ_00008 9275 4 Skin 0.31 protein_coding synonymous_variant LOW 213T>A Ala71Ala
M0068601 GOICGPIJ_00008 9324 4 Skin 0.31 protein_coding missense_variant MODERATE 262G>T Ala88Ser
M0068602 GOICGPIJ_00008 9654 3 Skin 0.23 protein_coding synonymous_variant LOW 592A>C Arg198Arg
M0068603 GOICGPIJ_00008 9692 3 Skin 0.23 protein_coding synonymous_variant LOW 630C>T Arg210Arg
M0068604 GOICGPIJ_00009 11074 3 Skin 0.23 protein_coding synonymous_variant LOW 351C>A Thr117Thr
M0068605 GOICGPIJ_00009 11631 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -207A>G None
M0068606 GOICGPIJ_00011 12931 3 Skin 0.23 protein_coding synonymous_variant LOW 738C>A Val246Val
M0068607 GOICGPIJ_00011 12972 4 Skin 0.31 protein_coding missense_variant MODERATE 697C>A Pro233Thr
M0068608 GOICGPIJ_00011 12988 4 Skin 0.31 protein_coding synonymous_variant LOW 681G>C Pro227Pro
M0068609 GOICGPIJ_00011 13015 4 Skin 0.31 protein_coding synonymous_variant LOW 654G>A Pro218Pro
M0068610 GOICGPIJ_00002 3282 3 Skin 0.23 protein_coding missense_variant MODERATE 479C>G Ala160Gly
M0068611 GOICGPIJ_00002 3437 3 Skin 0.23 protein_coding synonymous_variant LOW 324T>C Leu108Leu
M0068612 GOICGPIJ_00002 3458 3 Skin 0.23 protein_coding missense_variant MODERATE 303A>C Gln101His
M0068613 GOICGPIJ_00002 3473 3 Skin 0.23 protein_coding synonymous_variant LOW 288C>T Gly96Gly
M0068614 GOICGPIJ_00003 4865 5 Skin 0.38 protein_coding missense_variant MODERATE 37A>G Thr13Ala
M0068615 GOICGPIJ_00002 5438 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -1678A>G None
M0068616 GOICGPIJ_00003 4743 4 Skin 0.31 protein_coding synonymous_variant LOW 159C>G Val53Val
M0068617 GOICGPIJ_00001 881 3 Skin 0.23 protein_coding stop_lost&splice_region_variant HIGH 730T>C Ter244Glnext*?
M0068618 GOICGPIJ_00002 2719 3 Skin 0.23 protein_coding synonymous_variant LOW 1042C>T Leu348Leu
M0068619 GOICGPIJ_00002 2807 3 Skin 0.23 protein_coding synonymous_variant LOW 954A>C Ala318Ala
M0068620 GOICGPIJ_00002 2813 3 Skin 0.23 protein_coding synonymous_variant LOW 948G>A Ala316Ala
M0068621 GOICGPIJ_00009 10198 3 Skin 0.23 protein_coding synonymous_variant LOW 1227A>C Ser409Ser
M0068622 GOICGPIJ_00009 10382 3 Skin 0.23 protein_coding missense_variant MODERATE 1043G>A Ser348Asn
M0068623 GOICGPIJ_00009 10386 3 Skin 0.23 protein_coding missense_variant MODERATE 1039G>T Gly347Cys
M0068624 GOICGPIJ_00010 11848 3 Skin 0.23 protein_coding synonymous_variant LOW 111G>A Glu37Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term