Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2985
  Reference Plasmid   DSKIN0031-1_bin.8__k141_1365
  Reference Plasmid Size   41444
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0068860 EBIIEILO_00002 1271 6 Skin 0.33 protein_coding missense_variant MODERATE 379A>G Ser127Gly
M0068861 EBIIEILO_00002 1283 6 Skin 0.33 protein_coding missense_variant MODERATE 391C>A Arg131Ser
M0068862 EBIIEILO_00009 8137 3 Skin 0.17 protein_coding synonymous_variant LOW 603T>C Gly201Gly
M0068863 EBIIEILO_00009 8143 3 Skin 0.17 protein_coding synonymous_variant LOW 609G>A Val203Val
M0068864 EBIIEILO_00009 8146 3 Skin 0.17 protein_coding synonymous_variant LOW 612G>A Gly204Gly
M0068865 EBIIEILO_00013 12513 3 Skin 0.17 protein_coding missense_variant MODERATE 318G>C Glu106Asp
M0068866 EBIIEILO_00013 12558 3 Skin 0.17 protein_coding synonymous_variant LOW 363C>A Ala121Ala
M0068867 EBIIEILO_00013 12654 4 Skin 0.22 protein_coding synonymous_variant LOW 459T>C Pro153Pro
M0068868 EBIIEILO_00014 13033 5 Skin 0.28 protein_coding synonymous_variant LOW 573G>C Ser191Ser
M0068869 EBIIEILO_00015 14119 4 Skin 0.22 protein_coding synonymous_variant LOW 213C>T Ser71Ser
M0068870 EBIIEILO_00015 14148 4 Skin 0.22 protein_coding synonymous_variant LOW 184C>T Leu62Leu
M0068871 EBIIEILO_00015 14149 4 Skin 0.22 protein_coding synonymous_variant LOW 183T>A Gly61Gly
M0068872 EBIIEILO_00015 14155 4 Skin 0.22 protein_coding synonymous_variant LOW 177C>T Asn59Asn
M0068873 EBIIEILO_00015 14164 4 Skin 0.22 protein_coding synonymous_variant LOW 168C>G Pro56Pro
M0068874 EBIIEILO_00015 14166 6 Skin 0.33 protein_coding missense_variant MODERATE 166C>A Pro56Thr
M0068875 EBIIEILO_00014 14454 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -849G>T None
M0068876 EBIIEILO_00018 16062 5 Skin 0.28 protein_coding missense_variant MODERATE 28T>A Phe10Ile
M0068877 EBIIEILO_00019 16838 3 Skin 0.17 protein_coding missense_variant MODERATE 476A>G Glu159Gly
M0068878 EBIIEILO_00019 16875 3 Skin 0.17 protein_coding missense_variant MODERATE 439G>A Asp147Asn
M0068879 EBIIEILO_00019 16912 3 Skin 0.17 protein_coding missense_variant MODERATE 402C>G His134Gln
M0068880 EBIIEILO_00019 16916 3 Skin 0.17 protein_coding missense_variant MODERATE 398C>G Thr133Arg
M0068881 EBIIEILO_00019 16929 3 Skin 0.17 protein_coding missense_variant MODERATE 385G>A Asp129Asn
M0068882 EBIIEILO_00019 17277 3 Skin 0.17 protein_coding missense_variant MODERATE 37T>C Cys13Arg
M0068883 EBIIEILO_00014 17703 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4098C>T None
M0068884 EBIIEILO_00020 18958 3 Skin 0.17 protein_coding synonymous_variant LOW 522T>C Phe174Phe
M0068885 EBIIEILO_00020 18976 3 Skin 0.17 protein_coding synonymous_variant LOW 540C>T Cys180Cys
M0068886 EBIIEILO_00020 19309 3 Skin 0.17 protein_coding synonymous_variant LOW 873G>C Leu291Leu
M0068887 EBIIEILO_00020 19696 5 Skin 0.28 protein_coding synonymous_variant LOW 1260G>A Ala420Ala
M0068888 EBIIEILO_00019 22180 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4867T>C None
M0068889 EBIIEILO_00022 22426 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -249C>T None
M0068890 EBIIEILO_00023 22746 4 Skin 0.22 protein_coding synonymous_variant LOW 177T>C Ala59Ala
M0068891 EBIIEILO_00023 22776 4 Skin 0.22 protein_coding synonymous_variant LOW 147C>T Phe49Phe
M0068892 EBIIEILO_00024 23551 6 Skin 0.33 protein_coding missense_variant MODERATE 175T>G Leu59Val
M0068893 EBIIEILO_00024 23559 6 Skin 0.33 protein_coding synonymous_variant LOW 183G>A Ala61Ala
M0068894 EBIIEILO_00024 23577 6 Skin 0.33 protein_coding synonymous_variant LOW 201G>A Gly67Gly
M0068895 EBIIEILO_00024 23601 6 Skin 0.33 protein_coding synonymous_variant LOW 225T>C Pro75Pro
M0068896 EBIIEILO_00024 23614 6 Skin 0.33 protein_coding missense_variant MODERATE 238A>G Thr80Ala
M0068897 EBIIEILO_00022 23675 5 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -1498A>C None
M0068898 EBIIEILO_00022 23687 5 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -1510A>G None
M0068899 EBIIEILO_00022 23710 5 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -1533C>T None
M0068900 EBIIEILO_00022 23718 5 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -1541C>A None
M0068901 EBIIEILO_00022 23768 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1591G>A None
M0068902 EBIIEILO_00022 23898 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1721T>C None
M0068903 EBIIEILO_00022 23915 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1738A>G None
M0068904 EBIIEILO_00022 24164 6 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1987A>G None
M0068905 EBIIEILO_00022 24186 6 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2009G>A None
M0068906 EBIIEILO_00022 24276 6 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2099G>T None
M0068907 EBIIEILO_00022 24290 6 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2113A>G None
M0068908 EBIIEILO_00025 24338 5 Skin 0.28 protein_coding synonymous_variant LOW 45C>G Val15Val
M0068909 EBIIEILO_00025 24344 5 Skin 0.28 protein_coding synonymous_variant LOW 51G>T Pro17Pro
M0068910 EBIIEILO_00025 24458 5 Skin 0.28 protein_coding synonymous_variant LOW 165A>C Ala55Ala
M0068911 EBIIEILO_00025 24461 5 Skin 0.28 protein_coding synonymous_variant LOW 168T>C Arg56Arg
M0068912 EBIIEILO_00025 24554 4 Skin 0.22 protein_coding synonymous_variant LOW 261G>C Arg87Arg
M0068913 EBIIEILO_00025 24575 4 Skin 0.22 protein_coding synonymous_variant LOW 282T>A Ala94Ala
M0068914 EBIIEILO_00025 24599 4 Skin 0.22 protein_coding synonymous_variant LOW 306A>G Gly102Gly
M0068915 EBIIEILO_00025 24689 4 Skin 0.22 protein_coding synonymous_variant LOW 396C>T Ala132Ala
M0068916 EBIIEILO_00026 25876 6 Skin 0.33 protein_coding synonymous_variant LOW 999T>C Gly333Gly
M0068917 EBIIEILO_00026 26089 5 Skin 0.28 protein_coding synonymous_variant LOW 1212C>T Tyr404Tyr
M0068918 EBIIEILO_00026 26488 6 Skin 0.33 protein_coding synonymous_variant LOW 1611G>A Glu537Glu
M0068919 EBIIEILO_00026 26506 6 Skin 0.33 protein_coding synonymous_variant LOW 1629T>C Cys543Cys
M0068920 EBIIEILO_00026 26521 6 Skin 0.33 protein_coding synonymous_variant LOW 1644T>C Gly548Gly
M0068921 EBIIEILO_00026 26614 4 Skin 0.22 protein_coding synonymous_variant LOW 1737C>T Asp579Asp
M0068922 EBIIEILO_00026 26755 5 Skin 0.28 protein_coding synonymous_variant LOW 1878T>C Asp626Asp
M0068923 EBIIEILO_00026 26932 4 Skin 0.22 protein_coding synonymous_variant LOW 2055T>C Gly685Gly
M0068924 EBIIEILO_00026 26938 3 Skin 0.17 protein_coding synonymous_variant LOW 2061C>T Tyr687Tyr
M0068925 EBIIEILO_00026 26995 3 Skin 0.17 protein_coding synonymous_variant LOW 2118C>G Pro706Pro
M0068926 EBIIEILO_00026 27025 4 Skin 0.22 protein_coding synonymous_variant LOW 2148G>C Ser716Ser
M0068927 EBIIEILO_00027 27375 3 Skin 0.17 protein_coding synonymous_variant LOW 180G>T Ala60Ala
M0068928 EBIIEILO_00027 27473 5 Skin 0.28 protein_coding missense_variant MODERATE 278T>C Val93Ala
M0068929 EBIIEILO_00027 27531 4 Skin 0.22 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0068930 EBIIEILO_00027 27696 5 Skin 0.28 protein_coding synonymous_variant LOW 501C>T Arg167Arg
M0068931 EBIIEILO_00027 27819 4 Skin 0.22 protein_coding synonymous_variant LOW 624C>T Cys208Cys
M0068932 EBIIEILO_00027 27921 3 Skin 0.17 protein_coding synonymous_variant LOW 726C>T Ala242Ala
M0068933 EBIIEILO_00027 27927 4 Skin 0.22 protein_coding synonymous_variant LOW 732T>C Ala244Ala
M0068934 EBIIEILO_00027 27945 4 Skin 0.22 protein_coding synonymous_variant LOW 750C>A Arg250Arg
M0068935 EBIIEILO_00027 27948 4 Skin 0.22 protein_coding synonymous_variant LOW 753G>A Glu251Glu
M0068936 EBIIEILO_00027 28095 5 Skin 0.28 protein_coding synonymous_variant LOW 900T>C Pro300Pro
M0068937 EBIIEILO_00027 28362 4 Skin 0.22 protein_coding synonymous_variant LOW 1167A>G Gln389Gln
M0068938 EBIIEILO_00028 28645 3 Skin 0.17 protein_coding synonymous_variant LOW 36T>C Asp12Asp
M0068939 EBIIEILO_00011 11242 3 Skin 0.17 protein_coding synonymous_variant LOW 436C>T Leu146Leu
M0068940 EBIIEILO_00013 12721 3 Skin 0.17 protein_coding missense_variant MODERATE 526A>G Arg176Gly
M0068941 EBIIEILO_00013 12734 3 Skin 0.17 protein_coding missense_variant MODERATE 539T>C Val180Ala
M0068942 EBIIEILO_00014 13102 3 Skin 0.17 protein_coding synonymous_variant LOW 504T>C Ser168Ser
M0068943 EBIIEILO_00014 14520 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -915G>C None
M0068944 EBIIEILO_00016 14734 3 Skin 0.17 protein_coding synonymous_variant LOW 117C>T Gly39Gly
M0068945 EBIIEILO_00016 14758 3 Skin 0.17 protein_coding synonymous_variant LOW 141A>G Thr47Thr
M0068946 EBIIEILO_00026 26362 3 Skin 0.17 protein_coding synonymous_variant LOW 1485C>T Gly495Gly
M0068947 EBIIEILO_00026 26707 4 Skin 0.22 protein_coding synonymous_variant LOW 1830C>T Pro610Pro
M0068948 EBIIEILO_00027 27597 3 Skin 0.17 protein_coding synonymous_variant LOW 402C>T Asp134Asp
M0068949 EBIIEILO_00027 27618 3 Skin 0.17 protein_coding synonymous_variant LOW 423C>T Tyr141Tyr
M0068950 EBIIEILO_00027 28260 4 Skin 0.22 protein_coding synonymous_variant LOW 1065C>G Gly355Gly
M0068951 EBIIEILO_00028 28686 3 Skin 0.17 protein_coding missense_variant MODERATE 77A>G Asp26Gly
M0068952 EBIIEILO_00028 28688 3 Skin 0.17 protein_coding missense_variant MODERATE 79C>G Pro27Ala
M0068953 EBIIEILO_00028 28714 3 Skin 0.17 protein_coding synonymous_variant LOW 105A>T Arg35Arg
M0068954 EBIIEILO_00028 28804 3 Skin 0.17 protein_coding synonymous_variant LOW 195T>C Ala65Ala
M0068955 EBIIEILO_00015 14196 3 Skin 0.17 protein_coding synonymous_variant LOW 136T>C Leu46Leu
M0068956 EBIIEILO_00015 14197 3 Skin 0.17 protein_coding synonymous_variant LOW 135A>G Ala45Ala
M0068957 EBIIEILO_00020 18764 4 Skin 0.22 protein_coding missense_variant MODERATE 328A>T Thr110Ser
M0068958 EBIIEILO_00021 21360 4 Skin 0.22 protein_coding synonymous_variant LOW 471G>A Glu157Glu
M0068959 EBIIEILO_00021 21369 4 Skin 0.22 protein_coding synonymous_variant LOW 480A>G Val160Val
M0068960 EBIIEILO_00021 21375 4 Skin 0.22 protein_coding synonymous_variant LOW 486T>C Ala162Ala
M0068961 EBIIEILO_00025 24389 3 Skin 0.17 protein_coding synonymous_variant LOW 96C>T Asn32Asn
M0068962 EBIIEILO_00025 24392 3 Skin 0.17 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0068963 EBIIEILO_00020 19177 3 Skin 0.17 protein_coding synonymous_variant LOW 741G>A Pro247Pro
M0068964 EBIIEILO_00022 21597 3 Skin 0.17 protein_coding missense_variant MODERATE 581C>T Ala194Val
M0068965 EBIIEILO_00025 24833 3 Skin 0.17 protein_coding synonymous_variant LOW 540T>G Arg180Arg
M0068966 EBIIEILO_00025 24836 3 Skin 0.17 protein_coding synonymous_variant LOW 543G>C Ala181Ala
M0068967 EBIIEILO_00026 25627 3 Skin 0.17 protein_coding synonymous_variant LOW 750G>T Ser250Ser
M0068968 EBIIEILO_00026 25636 3 Skin 0.17 protein_coding synonymous_variant LOW 759A>G Glu253Glu
M0068969 EBIIEILO_00026 25642 3 Skin 0.17 protein_coding synonymous_variant LOW 765C>G Ser255Ser
M0068970 EBIIEILO_00026 25645 3 Skin 0.17 protein_coding synonymous_variant LOW 768G>C Val256Val
M0068971 EBIIEILO_00026 25648 3 Skin 0.17 protein_coding synonymous_variant LOW 771G>T Ala257Ala
M0068972 EBIIEILO_00028 28868 3 Skin 0.17 protein_coding missense_variant MODERATE 259G>A Ala87Thr
M0068973 EBIIEILO_00028 28874 3 Skin 0.17 protein_coding missense_variant MODERATE 265C>T Pro89Ser
M0068974 EBIIEILO_00028 29509 3 Skin 0.17 protein_coding synonymous_variant LOW 900C>A Val300Val
M0068975 EBIIEILO_00028 29526 3 Skin 0.17 protein_coding missense_variant MODERATE 917C>T Ala306Val
M0068976 EBIIEILO_00029 29767 3 Skin 0.17 protein_coding missense_variant MODERATE 563G>C Gly188Ala
M0068977 EBIIEILO_00029 29769 3 Skin 0.17 protein_coding synonymous_variant LOW 561A>T Ala187Ala
M0068978 EBIIEILO_00029 29820 3 Skin 0.17 protein_coding synonymous_variant LOW 510G>A Glu170Glu
M0068979 EBIIEILO_00029 29822 3 Skin 0.17 protein_coding missense_variant MODERATE 508G>C Glu170Gln
M0068980 EBIIEILO_00029 29826 3 Skin 0.17 protein_coding synonymous_variant LOW 504G>A Ala168Ala
M0068981 EBIIEILO_00029 29829 3 Skin 0.17 protein_coding synonymous_variant LOW 501G>T Ala167Ala
M0068982 EBIIEILO_00029 29841 3 Skin 0.17 protein_coding synonymous_variant LOW 489G>A Gln163Gln
M0068983 EBIIEILO_00029 29843 3 Skin 0.17 protein_coding missense_variant MODERATE 487C>G Gln163Glu
M0068984 EBIIEILO_00029 29871 3 Skin 0.17 protein_coding synonymous_variant LOW 459G>C Ser153Ser
M0068985 EBIIEILO_00029 29909 3 Skin 0.17 protein_coding synonymous_variant LOW 421T>C Leu141Leu
M0068986 EBIIEILO_00029 29919 3 Skin 0.17 protein_coding synonymous_variant LOW 411C>T Asp137Asp
M0068987 EBIIEILO_00029 29928 3 Skin 0.17 protein_coding synonymous_variant LOW 402C>A Ala134Ala
M0068988 EBIIEILO_00029 29936 3 Skin 0.17 protein_coding synonymous_variant LOW 394C>T Leu132Leu
M0068989 EBIIEILO_00029 29978 3 Skin 0.17 protein_coding missense_variant MODERATE 352A>T Thr118Ser
M0068990 EBIIEILO_00030 30895 3 Skin 0.17 protein_coding missense_variant MODERATE 373A>G Ser125Gly
M0068991 EBIIEILO_00030 30896 3 Skin 0.17 protein_coding missense_variant MODERATE 374G>T Ser125Ile
M0068992 EBIIEILO_00030 30897 3 Skin 0.17 protein_coding synonymous_variant LOW 375T>C Ser125Ser
M0068993 EBIIEILO_00032 32746 3 Skin 0.17 protein_coding missense_variant MODERATE 230T>A Val77Asp
M0068994 EBIIEILO_00032 32771 3 Skin 0.17 protein_coding synonymous_variant LOW 255G>C Leu85Leu
M0068995 EBIIEILO_00032 32837 3 Skin 0.17 protein_coding synonymous_variant LOW 321G>A Ala107Ala
M0068996 EBIIEILO_00032 32847 3 Skin 0.17 protein_coding missense_variant MODERATE 331T>G Ser111Ala
M0068997 EBIIEILO_00032 32858 3 Skin 0.17 protein_coding synonymous_variant LOW 342C>T Ala114Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
EBIIEILO_00038 2.A.81.1.6 86.1 5.7e-266 27 589 0.9559 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.81 The Aspartate:Alanine Exchanger (AAEx) Family