Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2986
  Reference Plasmid   DSKIN0031-1_bin.8__k141_15368
  Reference Plasmid Size   23035
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0068998 ECKMOMJG_00010 13649 4 Skin 0.40 protein_coding synonymous_variant LOW 9A>C Val3Val
M0068999 ECKMOMJG_00010 13889 4 Skin 0.40 protein_coding synonymous_variant LOW 249C>T Asn83Asn
M0069000 ECKMOMJG_00010 14141 3 Skin 0.30 protein_coding synonymous_variant LOW 501T>C Phe167Phe
M0069001 ECKMOMJG_00010 14363 3 Skin 0.30 protein_coding synonymous_variant LOW 723C>T Gly241Gly
M0069002 ECKMOMJG_00010 14921 3 Skin 0.30 protein_coding synonymous_variant LOW 1281G>C Thr427Thr
M0069003 ECKMOMJG_00010 14984 3 Skin 0.30 protein_coding synonymous_variant LOW 1344G>C Arg448Arg
M0069004 ECKMOMJG_00010 15014 3 Skin 0.30 protein_coding synonymous_variant LOW 1374C>T Asn458Asn
M0069005 ECKMOMJG_00010 15029 3 Skin 0.30 protein_coding synonymous_variant LOW 1389T>C Tyr463Tyr
M0069006 ECKMOMJG_00010 15080 4 Skin 0.40 protein_coding synonymous_variant LOW 1440G>A Glu480Glu
M0069007 ECKMOMJG_00011 15248 6 Skin 0.60 protein_coding missense_variant MODERATE 17C>T Thr6Ile
M0069008 ECKMOMJG_00011 15257 6 Skin 0.60 protein_coding missense_variant MODERATE 26G>A Gly9Asp
M0069009 ECKMOMJG_00011 15264 6 Skin 0.60 protein_coding synonymous_variant LOW 33C>G Ala11Ala
M0069010 ECKMOMJG_00011 15291 6 Skin 0.60 protein_coding synonymous_variant LOW 60C>G Ala20Ala
M0069011 ECKMOMJG_00011 15324 6 Skin 0.60 protein_coding synonymous_variant LOW 93G>C Gly31Gly
M0069012 ECKMOMJG_00011 15426 5 Skin 0.50 protein_coding synonymous_variant LOW 195T>C Tyr65Tyr
M0069013 ECKMOMJG_00011 15474 6 Skin 0.60 protein_coding synonymous_variant LOW 243C>G Leu81Leu
M0069014 ECKMOMJG_00011 15480 6 Skin 0.60 protein_coding synonymous_variant LOW 249A>G Val83Val
M0069015 ECKMOMJG_00011 15486 6 Skin 0.60 protein_coding missense_variant MODERATE 255C>G Asp85Glu
M0069016 ECKMOMJG_00011 15586 7 Skin 0.70 protein_coding missense_variant MODERATE 355A>G Ser119Gly
M0069017 ECKMOMJG_00011 15595 7 Skin 0.70 protein_coding missense_variant MODERATE 364G>A Asp122Asn
M0069018 ECKMOMJG_00012 15691 3 Skin 0.30 protein_coding missense_variant MODERATE 522C>G Ile174Met
M0069019 ECKMOMJG_00012 15721 5 Skin 0.50 protein_coding synonymous_variant LOW 492C>G Gly164Gly
M0069020 ECKMOMJG_00012 15759 5 Skin 0.50 protein_coding missense_variant MODERATE 454G>A Asp152Asn
M0069021 ECKMOMJG_00012 15961 3 Skin 0.30 protein_coding synonymous_variant LOW 252G>C Thr84Thr
M0069022 ECKMOMJG_00012 16051 3 Skin 0.30 protein_coding synonymous_variant LOW 162C>T Ala54Ala
M0069023 ECKMOMJG_00012 16060 3 Skin 0.30 protein_coding synonymous_variant LOW 153G>C Thr51Thr
M0069024 ECKMOMJG_00012 16076 3 Skin 0.30 protein_coding missense_variant MODERATE 137G>C Ser46Thr
M0069025 ECKMOMJG_00009 16257 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2939A>G None
M0069026 ECKMOMJG_00013 16439 5 Skin 0.50 protein_coding synonymous_variant LOW 2919A>C Ala973Ala
M0069027 ECKMOMJG_00013 16490 3 Skin 0.30 protein_coding synonymous_variant LOW 2868T>C Thr956Thr
M0069028 ECKMOMJG_00013 17150 5 Skin 0.50 protein_coding synonymous_variant LOW 2208A>G Gln736Gln
M0069029 ECKMOMJG_00013 17168 5 Skin 0.50 protein_coding synonymous_variant LOW 2190A>G Ala730Ala
M0069030 ECKMOMJG_00013 17174 4 Skin 0.40 protein_coding synonymous_variant LOW 2184C>T Ser728Ser
M0069031 ECKMOMJG_00013 17440 3 Skin 0.30 protein_coding synonymous_variant LOW 1918C>T Leu640Leu
M0069032 ECKMOMJG_00013 17453 3 Skin 0.30 protein_coding synonymous_variant LOW 1905G>A Ala635Ala
M0069033 ECKMOMJG_00013 17864 3 Skin 0.30 protein_coding synonymous_variant LOW 1494G>A Lys498Lys
M0069034 ECKMOMJG_00013 17885 3 Skin 0.30 protein_coding synonymous_variant LOW 1473C>G Val491Val
M0069035 ECKMOMJG_00013 17996 3 Skin 0.30 protein_coding synonymous_variant LOW 1362A>G Gly454Gly
M0069036 ECKMOMJG_00014 19426 4 Skin 0.40 protein_coding missense_variant MODERATE 1133C>T Ala378Val
M0069037 ECKMOMJG_00014 19434 4 Skin 0.40 protein_coding synonymous_variant LOW 1125T>C Asp375Asp
M0069038 ECKMOMJG_00014 19440 4 Skin 0.40 protein_coding synonymous_variant LOW 1119G>A Arg373Arg
M0069039 ECKMOMJG_00014 20041 3 Skin 0.30 protein_coding missense_variant MODERATE 518G>T Arg173Leu
M0069040 ECKMOMJG_00008 10129 4 Skin 0.40 protein_coding synonymous_variant LOW 216C>T Arg72Arg
M0069041 ECKMOMJG_00008 10173 5 Skin 0.50 protein_coding missense_variant MODERATE 260G>T Gly87Val
M0069042 ECKMOMJG_00008 10199 5 Skin 0.50 protein_coding missense_variant MODERATE 286A>G Asn96Asp
M0069043 ECKMOMJG_00008 10222 3 Skin 0.30 protein_coding synonymous_variant LOW 309C>T Ile103Ile
M0069044 ECKMOMJG_00008 10267 3 Skin 0.30 protein_coding synonymous_variant LOW 354C>A Ala118Ala
M0069045 ECKMOMJG_00008 10285 3 Skin 0.30 protein_coding synonymous_variant LOW 372A>G Ala124Ala
M0069046 ECKMOMJG_00008 10309 3 Skin 0.30 protein_coding missense_variant MODERATE 396C>A Asp132Glu
M0069047 ECKMOMJG_00008 10310 3 Skin 0.30 protein_coding synonymous_variant LOW 397T>C Leu133Leu
M0069048 ECKMOMJG_00008 10615 3 Skin 0.30 protein_coding synonymous_variant LOW 702T>C Asp234Asp
M0069049 ECKMOMJG_00008 11047 4 Skin 0.40 protein_coding synonymous_variant LOW 1134A>C Ala378Ala
M0069050 ECKMOMJG_00009 13154 3 Skin 0.30 protein_coding synonymous_variant LOW 165T>C Asn55Asn
M0069051 ECKMOMJG_00009 13172 3 Skin 0.30 protein_coding synonymous_variant LOW 147G>C Arg49Arg
M0069052 ECKMOMJG_00009 13175 3 Skin 0.30 protein_coding synonymous_variant LOW 144A>G Gly48Gly
M0069053 ECKMOMJG_00009 13178 3 Skin 0.30 protein_coding synonymous_variant LOW 141A>C Thr47Thr
M0069054 ECKMOMJG_00009 15197 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1879T>C None
M0069055 ECKMOMJG_00009 15213 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1895G>A None
M0069056 ECKMOMJG_00009 15228 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1910T>G None
M0069057 ECKMOMJG_00011 15258 3 Skin 0.30 protein_coding synonymous_variant LOW 27C>G Gly9Gly
M0069058 ECKMOMJG_00009 13064 3 Skin 0.30 protein_coding synonymous_variant LOW 255G>A Gln85Gln
M0069059 ECKMOMJG_00011 15540 5 Skin 0.50 protein_coding synonymous_variant LOW 309A>G Thr103Thr
M0069060 ECKMOMJG_00013 16862 4 Skin 0.40 protein_coding synonymous_variant LOW 2496A>G Gln832Gln
M0069061 ECKMOMJG_00013 17699 4 Skin 0.40 protein_coding synonymous_variant LOW 1659T>C Phe553Phe
M0069062 ECKMOMJG_00005 3632 3 Skin 0.30 protein_coding missense_variant MODERATE 980C>T Ala327Val
M0069063 ECKMOMJG_00005 3663 3 Skin 0.30 protein_coding synonymous_variant LOW 949T>C Leu317Leu
M0069064 ECKMOMJG_00005 3840 3 Skin 0.30 protein_coding missense_variant MODERATE 772G>T Ala258Ser
M0069065 ECKMOMJG_00006 5074 3 Skin 0.30 protein_coding synonymous_variant LOW 393C>T Leu131Leu
M0069066 ECKMOMJG_00013 19334 3 Skin 0.30 protein_coding synonymous_variant LOW 24G>A Leu8Leu
M0069067 ECKMOMJG_00014 19363 3 Skin 0.30 protein_coding missense_variant MODERATE 1196T>C Val399Ala
M0069068 ECKMOMJG_00014 19369 3 Skin 0.30 protein_coding missense_variant MODERATE 1190A>C Lys397Thr
M0069069 ECKMOMJG_00009 11606 3 Skin 0.30 protein_coding synonymous_variant LOW 1713C>T Asp571Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term