Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2990
  Reference Plasmid   DSKIN0031-1_bin.8__k141_23446
  Reference Plasmid Size   12935
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0069133 HHNCKEAP_00003 3077 3 Skin 0.23 protein_coding missense_variant MODERATE 1142T>A Leu381Gln
M0069134 HHNCKEAP_00004 3191 3 Skin 0.23 protein_coding synonymous_variant LOW 48G>C Val16Val
M0069135 HHNCKEAP_00004 3578 4 Skin 0.31 protein_coding synonymous_variant LOW 435G>C Pro145Pro
M0069136 HHNCKEAP_00004 3750 3 Skin 0.23 protein_coding missense_variant MODERATE 607A>G Ile203Val
M0069137 HHNCKEAP_00004 3887 5 Skin 0.38 protein_coding synonymous_variant LOW 744T>C Asp248Asp
M0069138 HHNCKEAP_00004 4058 4 Skin 0.31 protein_coding missense_variant MODERATE 915T>G Asp305Glu
M0069139 HHNCKEAP_00004 4235 4 Skin 0.31 protein_coding synonymous_variant LOW 1092G>C Ala364Ala
M0069140 HHNCKEAP_00004 4346 4 Skin 0.31 protein_coding synonymous_variant LOW 1203G>C Gly401Gly
M0069141 HHNCKEAP_00004 5144 5 Skin 0.38 protein_coding synonymous_variant LOW 2001T>C Asp667Asp
M0069142 HHNCKEAP_00004 5171 4 Skin 0.31 protein_coding synonymous_variant LOW 2028T>C Asp676Asp
M0069143 HHNCKEAP_00004 5180 4 Skin 0.31 protein_coding synonymous_variant LOW 2037G>A Glu679Glu
M0069144 HHNCKEAP_00004 5240 6 Skin 0.46 protein_coding synonymous_variant LOW 2097C>T Asp699Asp
M0069145 HHNCKEAP_00004 6302 6 Skin 0.46 protein_coding synonymous_variant LOW 3159C>G Thr1053Thr
M0069146 HHNCKEAP_00005 6466 5 Skin 0.38 protein_coding synonymous_variant LOW 138G>C Pro46Pro
M0069147 HHNCKEAP_00005 6811 3 Skin 0.23 protein_coding synonymous_variant LOW 483T>C Asp161Asp
M0069148 HHNCKEAP_00005 6833 3 Skin 0.23 protein_coding synonymous_variant LOW 505A>C Arg169Arg
M0069149 HHNCKEAP_00005 6891 5 Skin 0.38 protein_coding missense_variant MODERATE 563C>A Ala188Asp
M0069150 HHNCKEAP_00005 7360 3 Skin 0.23 protein_coding synonymous_variant LOW 1032T>G Leu344Leu
M0069151 HHNCKEAP_00005 7378 3 Skin 0.23 protein_coding synonymous_variant LOW 1050T>G Arg350Arg
M0069152 HHNCKEAP_00005 7457 5 Skin 0.38 protein_coding synonymous_variant LOW 1129T>C Leu377Leu
M0069153 HHNCKEAP_00006 8091 4 Skin 0.31 protein_coding synonymous_variant LOW 288G>C Ala96Ala
M0069154 HHNCKEAP_00007 9148 4 Skin 0.31 protein_coding synonymous_variant LOW 204G>T Pro68Pro
M0069155 HHNCKEAP_00008 9887 3 Skin 0.23 protein_coding synonymous_variant LOW 1431C>T Ile477Ile
M0069156 HHNCKEAP_00008 9908 3 Skin 0.23 protein_coding synonymous_variant LOW 1410C>T Asp470Asp
M0069157 HHNCKEAP_00008 9998 4 Skin 0.31 protein_coding synonymous_variant LOW 1320A>G Val440Val
M0069158 HHNCKEAP_00008 10238 4 Skin 0.31 protein_coding synonymous_variant LOW 1080A>G Gly360Gly
M0069159 HHNCKEAP_00008 10241 4 Skin 0.31 protein_coding synonymous_variant LOW 1077G>C Arg359Arg
M0069160 HHNCKEAP_00008 10724 3 Skin 0.23 protein_coding synonymous_variant LOW 594A>G Val198Val
M0069161 HHNCKEAP_00008 10973 4 Skin 0.31 protein_coding synonymous_variant LOW 345C>T Asn115Asn
M0069162 HHNCKEAP_00008 10982 4 Skin 0.31 protein_coding synonymous_variant LOW 336A>C Ala112Ala
M0069163 HHNCKEAP_00008 11045 4 Skin 0.31 protein_coding synonymous_variant LOW 273C>G Arg91Arg
M0069164 HHNCKEAP_00008 11153 5 Skin 0.38 protein_coding synonymous_variant LOW 165A>G Glu55Glu
M0069165 HHNCKEAP_00008 11225 3 Skin 0.23 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0069166 HHNCKEAP_00008 11255 6 Skin 0.46 protein_coding synonymous_variant LOW 63A>G Ala21Ala
M0069167 HHNCKEAP_00009 11539 7 Skin 0.54 protein_coding synonymous_variant LOW 1383T>C Phe461Phe
M0069168 HHNCKEAP_00009 11563 7 Skin 0.54 protein_coding synonymous_variant LOW 1359T>C Pro453Pro
M0069169 HHNCKEAP_00009 11998 3 Skin 0.23 protein_coding synonymous_variant LOW 924G>A Glu308Glu
M0069170 HHNCKEAP_00009 12469 4 Skin 0.31 protein_coding missense_variant MODERATE 453C>G Asp151Glu
M0069171 HHNCKEAP_00009 12490 4 Skin 0.31 protein_coding missense_variant MODERATE 432C>G Asp144Glu
M0069172 HHNCKEAP_00009 12514 5 Skin 0.38 protein_coding synonymous_variant LOW 408T>C Phe136Phe
M0069173 HHNCKEAP_00009 12520 4 Skin 0.31 protein_coding synonymous_variant LOW 402G>C Gly134Gly
M0069174 HHNCKEAP_00009 12535 5 Skin 0.38 protein_coding synonymous_variant LOW 387G>C Val129Val
M0069175 HHNCKEAP_00009 12586 6 Skin 0.46 protein_coding synonymous_variant LOW 336T>C Asn112Asn
M0069176 HHNCKEAP_00009 12595 6 Skin 0.46 protein_coding synonymous_variant LOW 327T>C Tyr109Tyr
M0069177 HHNCKEAP_00009 12609 6 Skin 0.46 protein_coding synonymous_variant LOW 313T>C Leu105Leu
M0069178 HHNCKEAP_00009 12616 6 Skin 0.46 protein_coding synonymous_variant LOW 306C>T Gly102Gly
M0069179 HHNCKEAP_00009 12632 6 Skin 0.46 protein_coding missense_variant MODERATE 290G>C Ser97Thr
M0069180 HHNCKEAP_00009 12633 6 Skin 0.46 protein_coding missense_variant MODERATE 289A>G Ser97Gly
M0069181 HHNCKEAP_00009 12634 6 Skin 0.46 protein_coding synonymous_variant LOW 288C>T Tyr96Tyr
M0069182 HHNCKEAP_00009 12712 5 Skin 0.38 protein_coding synonymous_variant LOW 210A>C Ala70Ala
M0069183 HHNCKEAP_00009 12715 6 Skin 0.46 protein_coding synonymous_variant LOW 207T>C Pro69Pro
M0069184 HHNCKEAP_00009 12720 6 Skin 0.46 protein_coding missense_variant MODERATE 202C>G Gln68Glu
M0069185 HHNCKEAP_00009 12727 5 Skin 0.38 protein_coding missense_variant MODERATE 195C>A Asp65Glu
M0069186 HHNCKEAP_00009 12748 6 Skin 0.46 protein_coding synonymous_variant LOW 174T>C Arg58Arg
M0069187 HHNCKEAP_00009 12760 6 Skin 0.46 protein_coding synonymous_variant LOW 162A>G Ala54Ala
M0069188 HHNCKEAP_00009 12796 6 Skin 0.46 protein_coding synonymous_variant LOW 126T>C Phe42Phe
M0069189 HHNCKEAP_00009 12799 6 Skin 0.46 protein_coding synonymous_variant LOW 123C>G Val41Val
M0069190 HHNCKEAP_00009 12808 6 Skin 0.46 protein_coding synonymous_variant LOW 114T>C Asp38Asp
M0069191 HHNCKEAP_00009 12832 6 Skin 0.46 protein_coding missense_variant MODERATE 90C>G Asp30Glu
M0069192 HHNCKEAP_00009 12851 6 Skin 0.46 protein_coding missense_variant MODERATE 71C>A Thr24Lys
M0069193 HHNCKEAP_00009 12868 6 Skin 0.46 protein_coding synonymous_variant LOW 54G>A Glu18Glu
M0069194 HHNCKEAP_00009 12877 6 Skin 0.46 protein_coding synonymous_variant LOW 45G>T Gly15Gly
M0069195 HHNCKEAP_00009 12880 6 Skin 0.46 protein_coding synonymous_variant LOW 42G>C Gly14Gly
M0069196 HHNCKEAP_00009 12907 5 Skin 0.38 protein_coding synonymous_variant LOW 15T>C Pro5Pro
M0069197 HHNCKEAP_00009 12914 5 Skin 0.38 protein_coding missense_variant MODERATE 8T>A Ile3Asn
M0069198 HHNCKEAP_00001 90 3 Skin 0.23 protein_coding synonymous_variant LOW 78G>C Arg26Arg
M0069199 HHNCKEAP_00001 113 3 Skin 0.23 protein_coding missense_variant MODERATE 101T>A Val34Glu
M0069200 HHNCKEAP_00001 115 3 Skin 0.23 protein_coding missense_variant MODERATE 103G>C Gly35Arg
M0069201 HHNCKEAP_00001 118 3 Skin 0.23 protein_coding missense_variant MODERATE 106G>C Val36Leu
M0069202 HHNCKEAP_00002 684 3 Skin 0.23 protein_coding synonymous_variant LOW 201C>G Val67Val
M0069203 HHNCKEAP_00002 1008 3 Skin 0.23 protein_coding synonymous_variant LOW 525T>C His175His
M0069204 HHNCKEAP_00002 1009 3 Skin 0.23 protein_coding synonymous_variant LOW 526T>C Leu176Leu
M0069205 HHNCKEAP_00002 1014 3 Skin 0.23 protein_coding synonymous_variant LOW 531A>T Ala177Ala
M0069206 HHNCKEAP_00002 1032 3 Skin 0.23 protein_coding synonymous_variant LOW 549G>C Arg183Arg
M0069207 HHNCKEAP_00002 1443 3 Skin 0.23 protein_coding synonymous_variant LOW 960C>T Phe320Phe
M0069208 HHNCKEAP_00002 1452 3 Skin 0.23 protein_coding synonymous_variant LOW 969T>G Leu323Leu
M0069209 HHNCKEAP_00003 1483 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -453C>G None
M0069210 HHNCKEAP_00003 1490 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -446T>C None
M0069211 HHNCKEAP_00003 1821 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -115T>C None
M0069212 HHNCKEAP_00003 1823 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -113T>C None
M0069213 HHNCKEAP_00003 1829 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -107C>T None
M0069214 HHNCKEAP_00003 1865 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -71C>T None
M0069215 HHNCKEAP_00003 1893 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -43G>T None
M0069216 HHNCKEAP_00003 1914 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -22C>T None
M0069217 HHNCKEAP_00003 1915 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -21G>A None
M0069218 HHNCKEAP_00003 1920 3 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -16G>A None
M0069219 HHNCKEAP_00003 2496 4 Skin 0.31 protein_coding synonymous_variant LOW 561C>T Asp187Asp
M0069220 HHNCKEAP_00003 2515 4 Skin 0.31 protein_coding missense_variant MODERATE 580G>T Ala194Ser
M0069221 HHNCKEAP_00003 2631 4 Skin 0.31 protein_coding synonymous_variant LOW 696G>C Gly232Gly
M0069222 HHNCKEAP_00003 2812 4 Skin 0.31 protein_coding synonymous_variant LOW 877C>T Leu293Leu
M0069223 HHNCKEAP_00004 5474 3 Skin 0.23 protein_coding synonymous_variant LOW 2331C>G Ala777Ala
M0069224 HHNCKEAP_00004 5483 3 Skin 0.23 protein_coding synonymous_variant LOW 2340T>C Gly780Gly
M0069225 HHNCKEAP_00004 5957 5 Skin 0.38 protein_coding synonymous_variant LOW 2814C>G Arg938Arg
M0069226 HHNCKEAP_00004 6059 3 Skin 0.23 protein_coding synonymous_variant LOW 2916T>C Gly972Gly
M0069227 HHNCKEAP_00004 6080 3 Skin 0.23 protein_coding synonymous_variant LOW 2937C>G Ala979Ala
M0069228 HHNCKEAP_00004 6119 3 Skin 0.23 protein_coding synonymous_variant LOW 2976C>G Thr992Thr
M0069229 HHNCKEAP_00004 6205 3 Skin 0.23 protein_coding missense_variant MODERATE 3062T>C Val1021Ala
M0069230 HHNCKEAP_00004 6276 3 Skin 0.23 protein_coding missense_variant MODERATE 3133C>G His1045Asp
M0069231 HHNCKEAP_00005 7126 3 Skin 0.23 protein_coding synonymous_variant LOW 798C>A Arg266Arg
M0069232 HHNCKEAP_00005 7489 4 Skin 0.31 protein_coding missense_variant MODERATE 1161A>G Ile387Met
M0069233 HHNCKEAP_00007 9361 3 Skin 0.23 protein_coding missense_variant MODERATE 417G>C Glu139Asp
M0069234 HHNCKEAP_00006 8890 3 Skin 0.23 protein_coding missense_variant MODERATE 1087A>G Ile363Val
M0069235 HHNCKEAP_00006 8901 3 Skin 0.23 protein_coding synonymous_variant LOW 1098C>T Ala366Ala
M0069236 HHNCKEAP_00006 8921 3 Skin 0.23 protein_coding missense_variant MODERATE 1118A>C Asp373Ala
M0069237 HHNCKEAP_00006 8926 3 Skin 0.23 protein_coding missense_variant MODERATE 1123T>C Ser375Pro
M0069238 HHNCKEAP_00007 8956 3 Skin 0.23 protein_coding synonymous_variant LOW 12T>C Pro4Pro
M0069239 HHNCKEAP_00007 8962 3 Skin 0.23 protein_coding synonymous_variant LOW 18G>C Thr6Thr
M0069240 HHNCKEAP_00007 8980 3 Skin 0.23 protein_coding synonymous_variant LOW 36T>G Leu12Leu
M0069241 HHNCKEAP_00007 9002 3 Skin 0.23 protein_coding missense_variant MODERATE 58G>C Ala20Pro
M0069242 HHNCKEAP_00009 11398 3 Skin 0.23 protein_coding synonymous_variant LOW 1524A>C Ala508Ala
M0069243 HHNCKEAP_00009 11404 3 Skin 0.23 protein_coding synonymous_variant LOW 1518C>A Ala506Ala
M0069244 HHNCKEAP_00009 11554 3 Skin 0.23 protein_coding synonymous_variant LOW 1368G>T Ser456Ser
M0069245 HHNCKEAP_00009 11851 4 Skin 0.31 protein_coding synonymous_variant LOW 1071C>T Thr357Thr
M0069246 HHNCKEAP_00004 6002 4 Skin 0.31 protein_coding synonymous_variant LOW 2859G>A Glu953Glu
M0069247 HHNCKEAP_00004 6005 4 Skin 0.31 protein_coding synonymous_variant LOW 2862T>C Gly954Gly
M0069248 HHNCKEAP_00003 2556 3 Skin 0.23 protein_coding synonymous_variant LOW 621C>T Asp207Asp
M0069249 HHNCKEAP_00003 2559 3 Skin 0.23 protein_coding synonymous_variant LOW 624C>T His208His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term