Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2991
  Reference Plasmid   DSKIN0031-1_bin.8__k141_37418
  Reference Plasmid Size   15154
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0069250 HOBODIDP_00005 130 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3919G>C None
M0069251 HOBODIDP_00005 150 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3899T>G None
M0069252 HOBODIDP_00002 1137 3 Skin 0.50 protein_coding synonymous_variant LOW 774A>G Glu258Glu
M0069253 HOBODIDP_00003 2029 4 Skin 0.67 protein_coding missense_variant MODERATE 814C>A Pro272Thr
M0069254 HOBODIDP_00003 2067 4 Skin 0.67 protein_coding missense_variant MODERATE 776G>C Arg259Pro
M0069255 HOBODIDP_00003 2300 4 Skin 0.67 protein_coding synonymous_variant LOW 543C>T Ile181Ile
M0069256 HOBODIDP_00003 2644 3 Skin 0.50 protein_coding missense_variant MODERATE 199G>T Ala67Ser
M0069257 HOBODIDP_00004 3157 3 Skin 0.50 protein_coding synonymous_variant LOW 765T>C Asp255Asp
M0069258 HOBODIDP_00004 3199 3 Skin 0.50 protein_coding synonymous_variant LOW 723A>G Gln241Gln
M0069259 HOBODIDP_00005 4752 3 Skin 0.50 protein_coding missense_variant MODERATE 704T>C Val235Ala
M0069260 HOBODIDP_00006 5087 5 Skin 0.83 protein_coding synonymous_variant LOW 1300T>C Leu434Leu
M0069261 HOBODIDP_00006 5712 4 Skin 0.67 protein_coding synonymous_variant LOW 675T>C Ala225Ala
M0069262 HOBODIDP_00002 6530 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4620C>A None
M0069263 HOBODIDP_00002 6583 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4673G>A None
M0069264 HOBODIDP_00002 6597 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4687C>A None
M0069265 HOBODIDP_00002 6731 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -4821G>A None
M0069266 HOBODIDP_00007 6820 3 Skin 0.50 protein_coding synonymous_variant LOW 858T>C Asp286Asp
M0069267 HOBODIDP_00007 6850 3 Skin 0.50 protein_coding synonymous_variant LOW 828T>C Cys276Cys
M0069268 HOBODIDP_00007 6859 3 Skin 0.50 protein_coding synonymous_variant LOW 819G>A Pro273Pro
M0069269 HOBODIDP_00007 6865 3 Skin 0.50 protein_coding synonymous_variant LOW 813C>T Gly271Gly
M0069270 HOBODIDP_00007 7395 4 Skin 0.67 protein_coding synonymous_variant LOW 283T>C Leu95Leu
M0069271 HOBODIDP_00008 8042 5 Skin 0.83 protein_coding missense_variant MODERATE 232G>A Ala78Thr
M0069272 HOBODIDP_00008 8098 4 Skin 0.67 protein_coding synonymous_variant LOW 288T>C Ile96Ile
M0069273 HOBODIDP_00009 9290 4 Skin 0.67 protein_coding missense_variant MODERATE 433C>T His145Tyr
M0069274 HOBODIDP_00009 9293 3 Skin 0.50 protein_coding missense_variant MODERATE 436G>C Ala146Pro
M0069275 HOBODIDP_00009 9295 3 Skin 0.50 protein_coding synonymous_variant LOW 438C>G Ala146Ala
M0069276 HOBODIDP_00010 9450 3 Skin 0.50 protein_coding missense_variant MODERATE 1452G>T Gln484His
M0069277 HOBODIDP_00010 9453 3 Skin 0.50 protein_coding synonymous_variant LOW 1449A>G Ala483Ala
M0069278 HOBODIDP_00010 9456 3 Skin 0.50 protein_coding synonymous_variant LOW 1446G>A Gly482Gly
M0069279 HOBODIDP_00010 9468 4 Skin 0.67 protein_coding synonymous_variant LOW 1434G>T Ala478Ala
M0069280 HOBODIDP_00010 9477 4 Skin 0.67 protein_coding missense_variant MODERATE 1425C>G Asp475Glu
M0069281 HOBODIDP_00010 9519 4 Skin 0.67 protein_coding synonymous_variant LOW 1383C>G Gly461Gly
M0069282 HOBODIDP_00010 9591 4 Skin 0.67 protein_coding synonymous_variant LOW 1311T>C Phe437Phe
M0069283 HOBODIDP_00010 9723 6 Skin 1.00 protein_coding synonymous_variant LOW 1179A>G Pro393Pro
M0069284 HOBODIDP_00010 10026 4 Skin 0.67 protein_coding synonymous_variant LOW 876C>A Ala292Ala
M0069285 HOBODIDP_00010 10410 4 Skin 0.67 protein_coding synonymous_variant LOW 492T>C Ala164Ala
M0069286 HOBODIDP_00011 11030 5 Skin 0.83 protein_coding synonymous_variant LOW 33C>T Tyr11Tyr
M0069287 HOBODIDP_00011 11072 5 Skin 0.83 protein_coding synonymous_variant LOW 75C>G Ala25Ala
M0069288 HOBODIDP_00011 11073 3 Skin 0.50 protein_coding missense_variant MODERATE 76G>A Asp26Asn
M0069289 HOBODIDP_00011 11076 5 Skin 0.83 protein_coding missense_variant MODERATE 79A>G Thr27Ala
M0069290 HOBODIDP_00011 11085 5 Skin 0.83 protein_coding synonymous_variant LOW 88T>C Leu30Leu
M0069291 HOBODIDP_00011 11105 5 Skin 0.83 protein_coding missense_variant MODERATE 108C>G His36Gln
M0069292 HOBODIDP_00011 11109 5 Skin 0.83 protein_coding synonymous_variant LOW 112T>C Leu38Leu
M0069293 HOBODIDP_00011 11112 5 Skin 0.83 protein_coding missense_variant MODERATE 115G>T Val39Phe
M0069294 HOBODIDP_00011 11114 5 Skin 0.83 protein_coding synonymous_variant LOW 117C>T Val39Val
M0069295 HOBODIDP_00011 11115 5 Skin 0.83 protein_coding missense_variant MODERATE 118G>T Ala40Ser
M0069296 HOBODIDP_00011 11117 5 Skin 0.83 protein_coding synonymous_variant LOW 120G>C Ala40Ala
M0069297 HOBODIDP_00011 11126 5 Skin 0.83 protein_coding synonymous_variant LOW 129T>C Phe43Phe
M0069298 HOBODIDP_00011 11135 5 Skin 0.83 protein_coding synonymous_variant LOW 138C>G Leu46Leu
M0069299 HOBODIDP_00004 3328 3 Skin 0.50 protein_coding synonymous_variant LOW 594C>A Ala198Ala
M0069300 HOBODIDP_00005 4315 4 Skin 0.67 protein_coding synonymous_variant LOW 267A>T Ala89Ala
M0069301 HOBODIDP_00005 4330 4 Skin 0.67 protein_coding synonymous_variant LOW 282C>G Ala94Ala
M0069302 HOBODIDP_00006 5016 4 Skin 0.67 protein_coding synonymous_variant LOW 1371A>G Glu457Glu
M0069303 HOBODIDP_00008 8170 3 Skin 0.50 protein_coding synonymous_variant LOW 360A>G Glu120Glu
M0069304 HOBODIDP_00008 8176 3 Skin 0.50 protein_coding synonymous_variant LOW 366G>A Gln122Gln
M0069305 HOBODIDP_00008 8188 3 Skin 0.50 protein_coding missense_variant MODERATE 378A>C Gln126His
M0069306 HOBODIDP_00008 8265 3 Skin 0.50 protein_coding missense_variant MODERATE 455C>G Ala152Gly
M0069307 HOBODIDP_00008 8286 3 Skin 0.50 protein_coding missense_variant MODERATE 476A>T Gln159Leu
M0069308 HOBODIDP_00008 8335 3 Skin 0.50 protein_coding synonymous_variant LOW 525C>T His175His
M0069309 HOBODIDP_00008 8353 3 Skin 0.50 protein_coding synonymous_variant LOW 543C>T Pro181Pro
M0069310 HOBODIDP_00008 8356 3 Skin 0.50 protein_coding synonymous_variant LOW 546C>G Ala182Ala
M0069311 HOBODIDP_00009 8875 4 Skin 0.67 protein_coding synonymous_variant LOW 18T>C Tyr6Tyr
M0069312 HOBODIDP_00010 10017 3 Skin 0.50 protein_coding synonymous_variant LOW 885C>A Gly295Gly
M0069313 HOBODIDP_00010 10620 3 Skin 0.50 protein_coding synonymous_variant LOW 282G>A Val94Val
M0069314 HOBODIDP_00010 10632 3 Skin 0.50 protein_coding synonymous_variant LOW 270T>C Arg90Arg
M0069315 HOBODIDP_00010 10635 3 Skin 0.50 protein_coding synonymous_variant LOW 267T>G Ser89Ser
M0069316 HOBODIDP_00012 11998 3 Skin 0.50 protein_coding synonymous_variant LOW 804T>C Asp268Asp
M0069317 HOBODIDP_00012 12257 3 Skin 0.50 protein_coding missense_variant MODERATE 545A>G His182Arg
M0069318 HOBODIDP_00010 12914 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2013A>T None
M0069319 HOBODIDP_00008 7897 4 Skin 0.67 protein_coding synonymous_variant LOW 87A>G Thr29Thr
M0069320 HOBODIDP_00008 7925 4 Skin 0.67 protein_coding synonymous_variant LOW 115C>T Leu39Leu
M0069321 HOBODIDP_00010 9612 3 Skin 0.50 protein_coding synonymous_variant LOW 1290T>C Gly430Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term