Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3020
  Reference Plasmid   DSKIN0041-1_bin.1__k141_257209
  Reference Plasmid Size   2754
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0069771 KDGGFCAP_00001 97 3 Skin 0.50 protein_coding missense_variant MODERATE 133T>G Ser45Ala
M0069772 KDGGFCAP_00001 1422 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1193G>A None
M0069773 KDGGFCAP_00001 1473 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1244C>T None
M0069774 KDGGFCAP_00001 1507 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -1278A>T None
M0069775 KDGGFCAP_00001 1509 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -1280T>G None
M0069776 KDGGFCAP_00001 1512 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -1283C>A None
M0069777 KDGGFCAP_00001 1515 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -1286A>T None
M0069778 KDGGFCAP_00001 1519 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -1290C>A None
M0069779 KDGGFCAP_00001 1527 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -1298C>T None
M0069780 KDGGFCAP_00001 2004 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -1775T>C None
M0069781 KDGGFCAP_00001 2019 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -1790G>A None
M0069782 KDGGFCAP_00001 2025 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -1796A>G None
M0069783 KDGGFCAP_00001 2208 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -1979T>C None
M0069784 KDGGFCAP_00001 2214 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1985T>C None
M0069785 KDGGFCAP_00001 2253 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2024T>C None
M0069786 KDGGFCAP_00001 2277 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2048C>T None
M0069787 KDGGFCAP_00001 2301 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -2072C>T None
M0069788 KDGGFCAP_00001 2311 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -2082C>T None
M0069789 KDGGFCAP_00001 2352 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -2123A>G None
M0069790 KDGGFCAP_00001 2449 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -2220T>C None
M0069791 KDGGFCAP_00001 2487 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -2258T>A None
M0069792 KDGGFCAP_00001 2511 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -2282A>G None
M0069793 KDGGFCAP_00001 2547 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -2318T>A None
M0069794 KDGGFCAP_00001 2613 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -2384C>T None
M0069795 KDGGFCAP_00001 2686 5 Skin 0.83 protein_coding upstream_gene_variant MODIFIER -2457A>C None
M0069796 KDGGFCAP_00001 1338 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1109A>G None
M0069797 KDGGFCAP_00001 1410 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1181C>T None
M0069798 KDGGFCAP_00001 1899 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1670T>C None
M0069799 KDGGFCAP_00001 2082 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1853G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term