Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3024
  Reference Plasmid   DSKIN0041-1_bin.40__k141_830388
  Reference Plasmid Size   11629
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0069874 IGGNFNOI_00010 9431 3 Skin 0.25 protein_coding synonymous_variant LOW 331C>A Arg111Arg
M0069875 IGGNFNOI_00007 10394 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4768C>T None
M0069876 IGGNFNOI_00001 365 3 Skin 0.25 protein_coding synonymous_variant LOW 363C>T Ser121Ser
M0069877 IGGNFNOI_00003 402 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -582T>C None
M0069878 IGGNFNOI_00003 419 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -565T>C None
M0069879 IGGNFNOI_00002 628 3 Skin 0.25 protein_coding missense_variant MODERATE 191T>A Leu64His
M0069880 IGGNFNOI_00003 1139 3 Skin 0.25 protein_coding synonymous_variant LOW 156T>C Asp52Asp
M0069881 IGGNFNOI_00002 1426 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -608G>A None
M0069882 IGGNFNOI_00002 1702 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -884C>G None
M0069883 IGGNFNOI_00005 2830 3 Skin 0.25 protein_coding synonymous_variant LOW 126T>C Ile42Ile
M0069884 IGGNFNOI_00006 3912 6 Skin 0.50 protein_coding missense_variant MODERATE 611A>C Glu204Ala
M0069885 IGGNFNOI_00006 4082 5 Skin 0.42 protein_coding synonymous_variant LOW 781C>T Leu261Leu
M0069886 IGGNFNOI_00006 4492 4 Skin 0.33 protein_coding synonymous_variant LOW 1191A>G Glu397Glu
M0069887 IGGNFNOI_00006 4525 4 Skin 0.33 protein_coding synonymous_variant LOW 1224C>T Ala408Ala
M0069888 IGGNFNOI_00006 4693 9 Skin 0.75 protein_coding synonymous_variant LOW 1392C>T Gly464Gly
M0069889 IGGNFNOI_00006 4723 8 Skin 0.67 protein_coding missense_variant MODERATE 1422G>T Gln474His
M0069890 IGGNFNOI_00006 4750 8 Skin 0.67 protein_coding synonymous_variant LOW 1449T>G Ala483Ala
M0069891 IGGNFNOI_00006 4754 8 Skin 0.67 protein_coding synonymous_variant LOW 1453C>T Leu485Leu
M0069892 IGGNFNOI_00002 5312 9 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -4494G>C None
M0069893 IGGNFNOI_00002 5314 9 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -4496C>T None
M0069894 IGGNFNOI_00007 5454 8 Skin 0.67 protein_coding missense_variant MODERATE 173T>C Val58Ala
M0069895 IGGNFNOI_00005 6026 5 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3071A>C None
M0069896 IGGNFNOI_00005 6114 6 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3159A>C None
M0069897 IGGNFNOI_00005 6123 6 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3168G>T None
M0069898 IGGNFNOI_00005 6146 6 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3191A>G None
M0069899 IGGNFNOI_00005 6169 6 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3214T>G None
M0069900 IGGNFNOI_00005 6202 7 Skin 0.58 protein_coding upstream_gene_variant MODIFIER -3247G>C None
M0069901 IGGNFNOI_00005 6244 7 Skin 0.58 protein_coding upstream_gene_variant MODIFIER -3289C>T None
M0069902 IGGNFNOI_00005 6246 7 Skin 0.58 protein_coding upstream_gene_variant MODIFIER -3291A>G None
M0069903 IGGNFNOI_00005 6260 7 Skin 0.58 protein_coding upstream_gene_variant MODIFIER -3305C>T None
M0069904 IGGNFNOI_00009 7068 7 Skin 0.58 protein_coding synonymous_variant LOW 648C>T Asp216Asp
M0069905 IGGNFNOI_00009 7074 7 Skin 0.58 protein_coding synonymous_variant LOW 654G>C Ala218Ala
M0069906 IGGNFNOI_00009 7086 7 Skin 0.58 protein_coding synonymous_variant LOW 666T>C Arg222Arg
M0069907 IGGNFNOI_00009 7269 7 Skin 0.58 protein_coding synonymous_variant LOW 849A>T Gly283Gly
M0069908 IGGNFNOI_00009 7973 5 Skin 0.42 protein_coding missense_variant MODERATE 1553C>G Ala518Gly
M0069909 IGGNFNOI_00009 8121 3 Skin 0.25 protein_coding synonymous_variant LOW 1701T>C Ala567Ala
M0069910 IGGNFNOI_00009 6834 4 Skin 0.33 protein_coding synonymous_variant LOW 414C>T Asp138Asp
M0069911 IGGNFNOI_00009 6846 4 Skin 0.33 protein_coding synonymous_variant LOW 426T>C Gly142Gly
M0069912 IGGNFNOI_00002 4891 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4073A>C None
M0069913 IGGNFNOI_00002 4919 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4101G>C None
M0069914 IGGNFNOI_00001 149 3 Skin 0.25 protein_coding synonymous_variant LOW 147A>G Leu49Leu
M0069915 IGGNFNOI_00001 161 3 Skin 0.25 protein_coding synonymous_variant LOW 159C>T Gly53Gly
M0069916 IGGNFNOI_00001 188 3 Skin 0.25 protein_coding synonymous_variant LOW 186T>C His62His
M0069917 IGGNFNOI_00001 191 3 Skin 0.25 protein_coding synonymous_variant LOW 189T>C Arg63Arg
M0069918 IGGNFNOI_00001 203 3 Skin 0.25 protein_coding synonymous_variant LOW 201C>T Phe67Phe
M0069919 IGGNFNOI_00003 1286 5 Skin 0.42 protein_coding synonymous_variant LOW 303A>G Glu101Glu
M0069920 IGGNFNOI_00005 2296 4 Skin 0.33 protein_coding synonymous_variant LOW 660G>T Ala220Ala
M0069921 IGGNFNOI_00002 5051 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4233C>G None
M0069922 IGGNFNOI_00002 5079 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4261G>T None
M0069923 IGGNFNOI_00002 5083 4 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4265T>G None
M0069924 IGGNFNOI_00009 6648 5 Skin 0.42 protein_coding synonymous_variant LOW 228T>G Pro76Pro
M0069925 IGGNFNOI_00009 7866 3 Skin 0.25 protein_coding synonymous_variant LOW 1446C>G Val482Val
M0069926 IGGNFNOI_00010 8488 3 Skin 0.25 protein_coding missense_variant MODERATE 1274C>G Ala425Gly
M0069927 IGGNFNOI_00010 8524 3 Skin 0.25 protein_coding missense_variant MODERATE 1238C>T Ala413Val
M0069928 IGGNFNOI_00010 8991 3 Skin 0.25 protein_coding synonymous_variant LOW 771A>G Thr257Thr
M0069929 IGGNFNOI_00002 1741 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -923G>C None
M0069930 IGGNFNOI_00002 1746 3 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -928G>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term