Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3039
  Reference Plasmid   DSKIN0049-1_bin.26__k141_38914
  Reference Plasmid Size   18788
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0070121 MMLANFAL_00001 243 6 Skin 0.67 protein_coding synonymous_variant LOW 78T>C Arg26Arg
M0070122 MMLANFAL_00001 696 4 Skin 0.44 protein_coding synonymous_variant LOW 531G>C Ala177Ala
M0070123 MMLANFAL_00001 807 4 Skin 0.44 protein_coding synonymous_variant LOW 642T>C Asp214Asp
M0070124 MMLANFAL_00001 813 4 Skin 0.44 protein_coding synonymous_variant LOW 648G>C Ala216Ala
M0070125 MMLANFAL_00003 3407 5 Skin 0.56 protein_coding synonymous_variant LOW 843C>T Ile281Ile
M0070126 MMLANFAL_00003 3989 3 Skin 0.33 protein_coding synonymous_variant LOW 1425C>A Pro475Pro
M0070127 MMLANFAL_00004 4435 3 Skin 0.33 protein_coding synonymous_variant LOW 177G>A Lys59Lys
M0070128 MMLANFAL_00004 4513 7 Skin 0.78 protein_coding synonymous_variant LOW 255T>C Asp85Asp
M0070129 MMLANFAL_00004 4534 7 Skin 0.78 protein_coding synonymous_variant LOW 276T>C Gly92Gly
M0070130 MMLANFAL_00004 4609 5 Skin 0.56 protein_coding synonymous_variant LOW 351G>A Ala117Ala
M0070131 MMLANFAL_00004 5125 6 Skin 0.67 protein_coding synonymous_variant LOW 867C>G Thr289Thr
M0070132 MMLANFAL_00004 5389 3 Skin 0.33 protein_coding synonymous_variant LOW 1131G>A Lys377Lys
M0070133 MMLANFAL_00002 2365 5 Skin 0.56 protein_coding synonymous_variant LOW 699G>C Ala233Ala
M0070134 MMLANFAL_00004 5068 3 Skin 0.33 protein_coding synonymous_variant LOW 810C>T Gly270Gly
M0070135 MMLANFAL_00004 5108 3 Skin 0.33 protein_coding missense_variant MODERATE 850G>A Asp284Asn
M0070136 MMLANFAL_00004 5689 4 Skin 0.44 protein_coding synonymous_variant LOW 1431C>T Tyr477Tyr
M0070137 MMLANFAL_00004 5776 3 Skin 0.33 protein_coding synonymous_variant LOW 1518C>T Arg506Arg
M0070138 MMLANFAL_00004 6141 3 Skin 0.33 protein_coding missense_variant MODERATE 1883C>G Ala628Gly
M0070139 MMLANFAL_00004 6244 4 Skin 0.44 protein_coding synonymous_variant LOW 1986A>G Ala662Ala
M0070140 MMLANFAL_00004 6287 3 Skin 0.33 protein_coding missense_variant MODERATE 2029G>A Gly677Ser
M0070141 MMLANFAL_00004 6304 4 Skin 0.44 protein_coding synonymous_variant LOW 2046T>C Ala682Ala
M0070142 MMLANFAL_00004 6364 5 Skin 0.56 protein_coding synonymous_variant LOW 2106A>G Gly702Gly
M0070143 MMLANFAL_00005 7482 4 Skin 0.44 protein_coding synonymous_variant LOW 168C>T Gly56Gly
M0070144 MMLANFAL_00006 9199 3 Skin 0.33 protein_coding synonymous_variant LOW 396A>G Ser132Ser
M0070145 MMLANFAL_00005 9602 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1953T>G None
M0070146 MMLANFAL_00009 11231 4 Skin 0.44 protein_coding synonymous_variant LOW 918A>G Glu306Glu
M0070147 MMLANFAL_00009 11258 4 Skin 0.44 protein_coding synonymous_variant LOW 891C>A Ile297Ile
M0070148 MMLANFAL_00009 11309 4 Skin 0.44 protein_coding synonymous_variant LOW 840T>G Leu280Leu
M0070149 MMLANFAL_00009 11312 4 Skin 0.44 protein_coding synonymous_variant LOW 837G>C Gly279Gly
M0070150 MMLANFAL_00009 11333 4 Skin 0.44 protein_coding synonymous_variant LOW 816G>C Gly272Gly
M0070151 MMLANFAL_00009 11366 4 Skin 0.44 protein_coding synonymous_variant LOW 783G>A Ala261Ala
M0070152 MMLANFAL_00010 12290 3 Skin 0.33 protein_coding missense_variant MODERATE 538G>C Ala180Pro
M0070153 MMLANFAL_00010 12453 3 Skin 0.33 protein_coding synonymous_variant LOW 375G>C Val125Val
M0070154 MMLANFAL_00010 12509 3 Skin 0.33 protein_coding synonymous_variant LOW 319T>C Leu107Leu
M0070155 MMLANFAL_00011 13144 4 Skin 0.44 protein_coding missense_variant MODERATE 92G>A Gly31Glu
M0070156 MMLANFAL_00011 13148 4 Skin 0.44 protein_coding missense_variant MODERATE 96T>G His32Gln
M0070157 MMLANFAL_00011 13475 3 Skin 0.33 protein_coding synonymous_variant LOW 423C>G Ala141Ala
M0070158 MMLANFAL_00014 17411 3 Skin 0.33 protein_coding synonymous_variant LOW 558T>C Gly186Gly
M0070159 MMLANFAL_00014 17438 3 Skin 0.33 protein_coding synonymous_variant LOW 531G>C Ala177Ala
M0070160 MMLANFAL_00014 17813 3 Skin 0.33 protein_coding synonymous_variant LOW 156T>C Pro52Pro
M0070161 MMLANFAL_00015 18105 3 Skin 0.33 protein_coding missense_variant MODERATE 668C>A Pro223His
M0070162 MMLANFAL_00015 18111 3 Skin 0.33 protein_coding missense_variant MODERATE 662C>T Pro221Leu
M0070163 MMLANFAL_00001 45 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -121A>G None
M0070164 MMLANFAL_00001 115 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -51T>C None
M0070165 MMLANFAL_00001 118 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -48A>C None
M0070166 MMLANFAL_00001 120 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -46G>A None
M0070167 MMLANFAL_00001 126 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -40G>T None
M0070168 MMLANFAL_00001 130 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -36C>T None
M0070169 MMLANFAL_00001 131 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -35T>C None
M0070170 MMLANFAL_00001 133 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -33G>C None
M0070171 MMLANFAL_00001 135 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -31G>T None
M0070172 MMLANFAL_00001 141 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -25A>T None
M0070173 MMLANFAL_00001 151 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -15G>A None
M0070174 MMLANFAL_00001 165 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -1G>T None
M0070175 MMLANFAL_00001 170 3 Skin 0.33 protein_coding missense_variant MODERATE 5G>A Arg2Gln
M0070176 MMLANFAL_00002 2422 4 Skin 0.44 protein_coding synonymous_variant LOW 756A>G Ala252Ala
M0070177 MMLANFAL_00001 6453 4 Skin 0.44 protein_coding downstream_gene_variant MODIFIER *4899T>C None
M0070178 MMLANFAL_00006 8172 3 Skin 0.33 protein_coding missense_variant MODERATE 1423G>A Ala475Thr
M0070179 MMLANFAL_00006 8182 3 Skin 0.33 protein_coding synonymous_variant LOW 1413A>C Ala471Ala
M0070180 MMLANFAL_00006 8230 3 Skin 0.33 protein_coding synonymous_variant LOW 1365C>G Pro455Pro
M0070181 MMLANFAL_00009 11500 3 Skin 0.33 protein_coding synonymous_variant LOW 649C>T Leu217Leu
M0070182 MMLANFAL_00009 11519 3 Skin 0.33 protein_coding synonymous_variant LOW 630A>G Ala210Ala
M0070183 MMLANFAL_00009 11561 3 Skin 0.33 protein_coding synonymous_variant LOW 588C>T Pro196Pro
M0070184 MMLANFAL_00011 13526 3 Skin 0.33 protein_coding synonymous_variant LOW 474C>T Ile158Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term